View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8941_low_20 (Length: 466)
Name: NF8941_low_20
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 5e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 285 - 454
Target Start/End: Complemental strand, 27506908 - 27506739
Alignment:
| Q |
285 |
attgtgtttgtgctaaaatgagaaatgaagaatcatagtgaaatgggattgggaggggaagaggggaaccatgaaaataaaaacttcatatcggacgaat |
384 |
Q |
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| T |
27506908 |
attgtgtttgtgctaaaatgagaaatgaagaatcatagtgaaatgggattgggaggggaagaggggaaccatgaaaataaaaacttcatatcggacgaat |
27506809 |
T |
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| Q |
385 |
taataaataaatctgtctacatttatgggagctacctacgtgcccttcttctccgacaggatatgatgtc |
454 |
Q |
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| T |
27506808 |
taataaataaatctgtctacatttatgggagctacctacgtgcccttcttctccgacaggatatgatgtc |
27506739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 81 - 188
Target Start/End: Complemental strand, 27507112 - 27507005
Alignment:
| Q |
81 |
ttttatttaattcttagtatgaaataagcaataaattaaagaggcggtaaaagttaggagaaaaatagaaatacaagtaaagttaagtgcacgactacca |
180 |
Q |
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| T |
27507112 |
ttttatttaattcttagaatgaaataagcaataaattaaagaggcggtaaaagttaggagaaaaatagaaatacaagtaaagttaagtgcacgactacca |
27507013 |
T |
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| Q |
181 |
tatatagc |
188 |
Q |
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|||||||| |
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| T |
27507012 |
tatatagc |
27507005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 27507235 - 27507168
Alignment:
| Q |
18 |
gttgttcagacatttt-actttaaatttacttacttttaccggctataacccatttctcaactctttt |
84 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27507235 |
gttgttcagatatttttactttaaatttacttacttttaccggctataacccatttctccactctttt |
27507168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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