View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8941_low_23 (Length: 457)

Name: NF8941_low_23
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8941_low_23
NF8941_low_23
[»] chr3 (3 HSPs)
chr3 (384-434)||(52746882-52746932)
chr3 (381-430)||(43366135-43366184)
chr3 (302-334)||(15510659-15510691)
[»] chr7 (4 HSPs)
chr7 (20-56)||(25005772-25005808)
chr7 (294-334)||(8227146-8227186)
chr7 (395-440)||(24822219-24822264)
chr7 (302-334)||(9626461-9626493)
[»] chr2 (3 HSPs)
chr2 (385-431)||(31465330-31465376)
chr2 (296-334)||(8861873-8861911)
chr2 (381-434)||(17894660-17894713)
[»] chr6 (2 HSPs)
chr6 (293-334)||(26860238-26860279)
chr6 (303-331)||(19686656-19686684)
[»] chr4 (3 HSPs)
chr4 (385-434)||(24703199-24703248)
chr4 (296-334)||(54452019-54452057)
chr4 (302-334)||(13610753-13610785)
[»] chr8 (1 HSPs)
chr8 (302-335)||(30884215-30884248)
[»] chr5 (2 HSPs)
chr5 (297-334)||(14197723-14197760)
chr5 (297-334)||(42550257-42550294)
[»] chr1 (2 HSPs)
chr1 (297-334)||(45931671-45931708)
chr1 (302-334)||(24029837-24029869)


Alignment Details
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 52746932 - 52746882
Alignment:
Q  384 aaaaataaaccatccaatccatctattaaagattatgtccatccaatccat 434  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||||||    
T  52746932 aaaaaaaaaccatccaatccatccattaaagattatgtcaatccaatccat 52746882  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 43366184 - 43366135
Alignment:
Q  381 ttgaaaaataaaccatccaatccatctattaaagattatgtccatccaat 430  Q
    |||||||| ||||||||||||||||| |||| |  |||||||||||||||    
T  43366184 ttgaaaaaaaaaccatccaatccatccattagattttatgtccatccaat 43366135  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 15510659 - 15510691
Alignment:
Q  302 gtggcaaaatagatggattggatggatatggat 334  Q
    |||||||||| ||||||||||||||||||||||    
T  15510659 gtggcaaaatggatggattggatggatatggat 15510691  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 25005808 - 25005772
Alignment:
Q  20 tgaataactatcttgtaataattgagattacaataca 56  Q
    |||||||||||||||||||||||||||||||||||||    
T  25005808 tgaataactatcttgtaataattgagattacaataca 25005772  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 8227186 - 8227146
Alignment:
Q  294 aattaggagtggcaaaatagatggattggatggatatggat 334  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  8227186 aattaggggtggcaaaatggatggattggatggatatggat 8227146  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 440
Target Start/End: Original strand, 24822219 - 24822264
Alignment:
Q  395 atccaatccatctattaaagattatgtccatccaatccataaatta 440  Q
    ||||| |||||| |||||||||||||| |||||||||||| |||||    
T  24822219 atccagtccatccattaaagattatgttcatccaatccatcaatta 24822264  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 9626461 - 9626493
Alignment:
Q  302 gtggcaaaatagatggattggatggatatggat 334  Q
    |||||||||| ||||||||||||||||||||||    
T  9626461 gtggcaaaatggatggattggatggatatggat 9626493  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 31465330 - 31465376
Alignment:
Q  385 aaaataaaccatccaatccatctattaaagattatgtccatccaatc 431  Q
    |||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  31465330 aaaagaaaccatccaatccatccattaaagattatgtccatcaaatc 31465376  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 8861873 - 8861911
Alignment:
Q  296 ttaggagtggcaaaatagatggattggatggatatggat 334  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  8861873 ttaggggtggcaaaatggatggattggatggatatggat 8861911  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 17894713 - 17894660
Alignment:
Q  381 ttgaaaaataaaccatccaatccatctattaaagattatgtccatccaatccat 434  Q
    |||||||| ||||||||||||||||| ||||    |||||||||||||||||||    
T  17894713 ttgaaaaaaaaaccatccaatccatccattaggttttatgtccatccaatccat 17894660  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 26860279 - 26860238
Alignment:
Q  293 caattaggagtggcaaaatagatggattggatggatatggat 334  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  26860279 caattaggggtggcaaaatggatggattggatggatatggat 26860238  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 331
Target Start/End: Complemental strand, 19686684 - 19686656
Alignment:
Q  303 tggcaaaatagatggattggatggatatg 331  Q
    |||||||||||||||||||||||||||||    
T  19686684 tggcaaaatagatggattggatggatatg 19686656  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 24703248 - 24703199
Alignment:
Q  385 aaaataaaccatccaatccatctattaaagattatgtccatccaatccat 434  Q
    |||| ||||||||||||||||| |||||  ||||||||||||||||||||    
T  24703248 aaaaaaaaccatccaatccatccattaagtattatgtccatccaatccat 24703199  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 54452019 - 54452057
Alignment:
Q  296 ttaggagtggcaaaatagatggattggatggatatggat 334  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  54452019 ttaggggtggcaaaatggatggattggatggatatggat 54452057  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 13610785 - 13610753
Alignment:
Q  302 gtggcaaaatagatggattggatggatatggat 334  Q
    |||||||||| ||||||||||||||||||||||    
T  13610785 gtggcaaaatggatggattggatggatatggat 13610753  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 30884215 - 30884248
Alignment:
Q  302 gtggcaaaatagatggattggatggatatggata 335  Q
    |||||||||| |||||||||||||||||||||||    
T  30884215 gtggcaaaatggatggattggatggatatggata 30884248  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 14197760 - 14197723
Alignment:
Q  297 taggagtggcaaaatagatggattggatggatatggat 334  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  14197760 taggggtggcaaaatggatggattggatggatatggat 14197723  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 42550257 - 42550294
Alignment:
Q  297 taggagtggcaaaatagatggattggatggatatggat 334  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  42550257 taggggtggcaaaatggatggattggatggatatggat 42550294  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 45931708 - 45931671
Alignment:
Q  297 taggagtggcaaaatagatggattggatggatatggat 334  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  45931708 taggggtggcaaaatggatggattggatggatatggat 45931671  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 24029869 - 24029837
Alignment:
Q  302 gtggcaaaatagatggattggatggatatggat 334  Q
    |||||||||| ||||||||||||||||||||||    
T  24029869 gtggcaaaatggatggattggatggatatggat 24029837  T

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