View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8941_low_25 (Length: 456)

Name: NF8941_low_25
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8941_low_25
NF8941_low_25
[»] chr4 (7 HSPs)
chr4 (274-440)||(50115086-50115249)
chr4 (147-278)||(50117489-50117620)
chr4 (1-106)||(50117630-50117735)
chr4 (374-440)||(49446594-49446660)
chr4 (374-440)||(20390064-20390130)
chr4 (374-440)||(44646526-44646592)
chr4 (377-417)||(49769121-49769161)
[»] chr3 (4 HSPs)
chr3 (374-440)||(52340122-52340188)
chr3 (374-440)||(18399160-18399226)
chr3 (375-440)||(7754772-7754837)
chr3 (374-440)||(27968236-27968303)
[»] chr5 (6 HSPs)
chr5 (378-440)||(3263786-3263848)
chr5 (378-440)||(8247106-8247168)
chr5 (378-440)||(5356303-5356365)
chr5 (377-428)||(10051781-10051832)
chr5 (374-440)||(19692763-19692829)
chr5 (379-440)||(28793374-28793435)
[»] chr1 (6 HSPs)
chr1 (374-440)||(7549882-7549948)
chr1 (374-440)||(31745408-31745474)
chr1 (374-440)||(40377081-40377147)
chr1 (379-440)||(25302111-25302172)
chr1 (376-440)||(5851574-5851636)
chr1 (378-434)||(12148304-12148360)
[»] chr2 (3 HSPs)
chr2 (379-440)||(20683003-20683064)
chr2 (374-440)||(42945015-42945081)
chr2 (374-438)||(44941082-44941146)
[»] chr8 (4 HSPs)
chr8 (374-440)||(31206349-31206415)
chr8 (378-440)||(38956923-38956985)
chr8 (374-440)||(5020055-5020119)
chr8 (378-440)||(5217763-5217825)
[»] chr7 (1 HSPs)
chr7 (378-440)||(47507649-47507711)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 274 - 440
Target Start/End: Complemental strand, 50115249 - 50115086
Alignment:
Q  274 cagaaaagattagagagaaagttgcatgattcgttttgttgcaaatgtaattgattacaccactttctcttgtgaaagtggacataaacaccaaaactat 373  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50115249 cagaaaaaattagagagaaagttgcatgattcgttttgttgcaaatgtaattgattacaccactttctcttgtgaaagtggacataaacaccaaaactat 50115150  T
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  50115149 aggcctttaaatggtaacttatcataata---tgtgtaatcaatgcataggaaatcgaaatctttga 50115086  T

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Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 147 - 278
Target Start/End: Complemental strand, 50117620 - 50117489
Alignment:
Q  147 actcattaattgcattggaaaactgcaaccaaacattaaatagcaaggcaaatgcactttaagacagaaaggtgtaacataaaaccacttaatgttcata 246  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50117620 actcattaattgcatgggaaaactgcaaccaaacattaaatagcaaggcaaatgcactttaagacagaaaggtgtaacataaaaccacttaatgttcata 50117521  T
Q  247 tatcaactcaatgtatccatgagaatacagaa 278  Q
    ||||||||||||||||||||||||||||||||    
T  50117520 tatcaactcaatgtatccatgagaatacagaa 50117489  T

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Target: chr4; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 50117735 - 50117630
Alignment:
Q  1 atgactgattccattaaattaaagaacggaaaagatgtcagggaggaatgtactcaacagacgtgctgctcatctaggggatgaccaaaagcattaaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50117735 atgactgattccattaaattaaagaacggaaaagatgtcagggaggaatgtactcaacagacgtgctgctcatctaggggatgaccaaaagcattaaatg 50117636  T
Q  101 tgactg 106  Q
    ||||||    
T  50117635 tgactg 50117630  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 49446594 - 49446660
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    |||||||||||| |||||||||||| | ||  |||||||||||||||| |||||||||||| |||||    
T  49446594 aggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttga 49446660  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 20390130 - 20390064
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    |||| |||||||||||||||||||| | ||||||||| |||||||||| | ||||| |||| |||||    
T  20390130 aggcttttaaatggtaacttatcatgaaaagttgtgtgatcaatgcatcgaaaatcaaaatatttga 20390064  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 44646526 - 44646592
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    |||| ||| ||| |||||||||||| | ||  |||||||||||||||| |||||||||||| |||||    
T  44646526 aggcttttgaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttga 44646592  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 49769121 - 49769161
Alignment:
Q  377 cctttaaatggtaacttatcataataagttgtgtaatcaat 417  Q
    |||||||||||||||||||||||| ||  ||||||||||||    
T  49769121 cctttaaatggtaacttatcataaaaatatgtgtaatcaat 49769161  T

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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 52340122 - 52340188
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||    
T  52340122 aggcctttaaatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatctttga 52340188  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 18399160 - 18399226
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    |||| |||||||||||||||||||| | |||||||||||||||||||| |||||||||||| |||||    
T  18399160 aggcttttaaatggtaacttatcatgaaaagttgtgtaatcaatgcatcggaaatcgaaatatttga 18399226  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 7754772 - 7754837
Alignment:
Q  375 ggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    ||||||||||| |||||||||||| | ||  ||| |||||||||||| ||||||||||||| ||||    
T  7754772 ggcctttaaatagtaacttatcatgaaaatatgtctaatcaatgcatcggaaatcgaaatcgttga 7754837  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 27968303 - 27968236
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatc-aatgcataggaaatcgaaatctttga 440  Q
    ||||||||||||||||||||||||| | ||  ||||||||| ||||||| | ||||| ||||||||||    
T  27968303 aggcctttaaatggtaacttatcatgaaaatatgtgtaatcaaatgcatcgaaaatcaaaatctttga 27968236  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 3263848 - 3263786
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    ||||||||||||||||||||| | ||  |||||||||||||||| ||||||||||||||||||    
T  3263848 ctttaaatggtaacttatcattaaaatatgtgtaatcaatgcatcggaaatcgaaatctttga 3263786  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 8247168 - 8247106
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    ||||||||||||||||||||| | ||||||| |||||||||||| |||||||||||| |||||    
T  8247168 ctttaaatggtaacttatcatgaaaagttgtataatcaatgcatcggaaatcgaaatatttga 8247106  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 5356303 - 5356365
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    ||||||||||||||||||||| | ||  |||||||||||||||| | |||||||||| |||||    
T  5356303 ctttaaatggtaacttatcatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttga 5356365  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 10051832 - 10051781
Alignment:
Q  377 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaat 428  Q
    ||||||||||||||||||| || | ||||||| |||||||||||| ||||||    
T  10051832 cctttaaatggtaacttattatgaaaagttgtataatcaatgcatcggaaat 10051781  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 19692829 - 19692763
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    |||||||||||| |||||||||||| | |   |||||||||||||||| | |||||||||| |||||    
T  19692829 aggcctttaaattgtaacttatcatcaaattatgtgtaatcaatgcattgaaaatcgaaatatttga 19692763  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 28793435 - 28793374
Alignment:
Q  379 tttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    |||||||||||| ||||||||| ||  | |||||| ||||||| |||||||||||| |||||    
T  28793435 tttaaatggtaaattatcataaaaatatatgtaattaatgcatcggaaatcgaaatatttga 28793374  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 7549948 - 7549882
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    |||||||||||| |||||||||||| | ||||||||| ||||||||||  ||||||||||| |||||    
T  7549948 aggcctttaaattgtaacttatcatgaaaagttgtgtgatcaatgcatcagaaatcgaaatatttga 7549882  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 31745408 - 31745474
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    |||||||||||| |||||||||||||| ||  |||||||||||||||| |  ||||||||| |||||    
T  31745408 aggcctttaaatagtaacttatcataaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga 31745474  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 40377147 - 40377081
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    ||||||||||||||||| ||||||| | ||||||||||||||||| || || |||| |||| |||||    
T  40377147 aggcctttaaatggtaatttatcatgaaaagttgtgtaatcaatgaattgggaatcaaaatatttga 40377081  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 25302172 - 25302111
Alignment:
Q  379 tttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    |||||||||||||||||||| | ||  ||||||||||||| || | ||||||||||||||||    
T  25302172 tttaaatggtaacttatcatgaaaatatgtgtaatcaatgtattgaaaatcgaaatctttga 25302111  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 5851636 - 5851574
Alignment:
Q  376 gcctttaaatggtaacttatcat-aataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    ||||||||||||||||||||||| ||||   | |||||||||||||| | ||||||||||||||||    
T  5851636 gcctttaaatggtaacttatcatgaata---tttgtaatcaatgcatcgaaaatcgaaatctttga 5851574  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 12148304 - 12148360
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaat 434  Q
    ||||||||||||||||||||| | ||  ||||||| |||||||| ||||||| ||||    
T  12148304 ctttaaatggtaacttatcatgaaaatatgtgtaaccaatgcattggaaatcaaaat 12148360  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 20683003 - 20683064
Alignment:
Q  379 tttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    |||| ||||||||||||||||| ||  |||||||||||||||| |||||||||||| |||||    
T  20683003 tttatatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatatttga 20683064  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 42945015 - 42945081
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    |||||||||||| |||| ||||||||| ||  |||||||||||||||  |||||||||||| |||||    
T  42945015 aggcctttaaatagtaaattatcataaaaatatgtgtaatcaatgcactggaaatcgaaatatttga 42945081  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 438
Target Start/End: Original strand, 44941082 - 44941146
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatcttt 438  Q
    ||||||||||||||||| ||||||  | ||  | |||||||||||||| ||||||||||||||||    
T  44941082 aggcctttaaatggtaatttatcaggaaaatatatgtaatcaatgcatcggaaatcgaaatcttt 44941146  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 31206415 - 31206349
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    |||||||||||| |||| ||||||||| ||  |||||||||||||||| ||||||| |||| |||||    
T  31206415 aggcctttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcggaaatcaaaatatttga 31206349  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 38956985 - 38956923
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    ||||||||| ||||||||||| | ||  |||||||||||||||| |||||||||||| |||||    
T  38956985 ctttaaatgataacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttga 38956923  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 5020055 - 5020119
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    |||||||||||||||||||| |||| | ||  ||||||||||||| || |||||| |||||||||||    
T  5020055 aggcctttaaatggtaacttgtcatgaaaa--tgtgtaatcaatgtatcggaaattgaaatctttga 5020119  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 5217763 - 5217825
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    ||||| ||||||| ||||||||| ||  |||||||||||| ||| |||||||||||| |||||    
T  5217763 ctttatatggtaatttatcataaaaatatgtgtaatcaatacatcggaaatcgaaatatttga 5217825  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 47507711 - 47507649
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga 440  Q
    |||||||||||||||| |||| | ||  |||||||||||| ||| |||||| |||||||||||    
T  47507711 ctttaaatggtaacttctcatgaaaaaatgtgtaatcaatacatcggaaattgaaatctttga 47507649  T

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