View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8941_low_27 (Length: 455)
Name: NF8941_low_27
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 23035992 - 23035635
Alignment:
| Q |
1 |
ttatcatcctctgcatgtaatatgagcttcataagaagaaaa-ttaagcctttagcagtttacctgtaatatttttagcagggtaccgaacagatacctt |
99 |
Q |
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| T |
23035992 |
ttatcatcctctgcatgtcatatgagcttcataagacgaaaaattaaacctttggcagtttacctgtaatatttttagcagagtaccgaacagatacctt |
23035893 |
T |
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| Q |
100 |
cgatcggtagaaataagtaggctatgtttggcaataagagttaaaagaaatgaagattgtgtaacttatccatattttctagaagccaaataaatgaaga |
199 |
Q |
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| T |
23035892 |
ccgtcggtagaaataagtaggctatgtttggctataagagttaaaataaatgaagattgtgtaacttatccatattttctagaagccaaataaatgaaga |
23035793 |
T |
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| Q |
200 |
ttgtgcaacttaaccgtgtttggctattattcggcaaaaccctatattagtttacaggttcacacgtaaacttcttttggggattgtggtaatatttaat |
299 |
Q |
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| T |
23035792 |
ttgtgtaacttaaccatgtttggctagtattcggcaaaaccctatattagtttataggttcacaggtaaacttctttaggggattgtggaaatattttat |
23035693 |
T |
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| Q |
300 |
gagagtccaagagaagtacttcgtacatgtgtgacatgataaatgaagtagttaaaga |
357 |
Q |
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| T |
23035692 |
gagagtccaagaaaactacttcgtacatgtgtgacatgataaatgaagtggttaaaga |
23035635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 23148580 - 23148399
Alignment:
| Q |
1 |
ttatcatcctctgcatgtaatatgagcttcataagaagaaaattaagcctttagcagtttacctgtaatatttttagcagggtaccgaacagataccttc |
100 |
Q |
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| T |
23148580 |
ttatcatcctttgcaagttacatgagcttcactagaagaaactgaaaactttgcaagtgtaccaataatgtttttagcagagtgccgaaaacataccttc |
23148481 |
T |
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| Q |
101 |
gatcggtagaaataagtaggctatgtttggcaataagagttaaaagaaatgaagattgtgtaacttatccatattttctaga |
182 |
Q |
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| T |
23148480 |
ttccggtcgaaataagtgggctatgcttggcaataagagttaaaataaatgaagattgttcaacttaaccatgtttactaga |
23148399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 23145671 - 23145561
Alignment:
| Q |
72 |
ttttagcagggtaccgaacagataccttcgatcggtagaaataagtaggctatgtttggcaataagagttaaaagaaatgaagattgtgtaacttatcca |
171 |
Q |
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| T |
23145671 |
ttttagcagagtgccgaaaacataccttcttccagtcgaaataagttggctatgcttggctataagagttaaaataaataaagattgttcaacttaacca |
23145572 |
T |
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| Q |
172 |
tattttctaga |
182 |
Q |
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| T |
23145571 |
tgtttactaga |
23145561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 9639115 - 9639062
Alignment:
| Q |
323 |
tacatgtgtgacatgataaatgaagtagttaaagagagaggaaaagggatagaa |
376 |
Q |
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| T |
9639115 |
tacatatgtgacatgataaatgaagtgatcaaagagggagaaaaagggatagaa |
9639062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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