View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8941_low_29 (Length: 426)
Name: NF8941_low_29
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 33887841 - 33888147
Alignment:
| Q |
19 |
atatgtagttgtaatagtcggaattaggatgacattaagttgcaaatatatgtaggtttctttaggggattgtaacatatgtaagagtattcatcaagtg |
118 |
Q |
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| T |
33887841 |
atatgtagttgtaatagtcggaattagaatgacattaagttgcaaatatatgtaggtttctttaggggattgtaacatatgtaagagca----------- |
33887929 |
T |
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| Q |
119 |
gttgtaagaacctggtaatgcgaacaacaaaataattgctttgtcttcctcatcgatcttcaccccaaatcgtaccggatcaatcattatgttgttgaag |
218 |
Q |
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| T |
33887930 |
gttgtaagaacctggtaatgcgaacaacaaaataattgctttgtcttcctcatcgatcttcaccccaaatcgtaccggatcaatcattatgttgttgaag |
33888029 |
T |
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| Q |
219 |
atattgatatgtatttgtatatcagatcctccatgcatattcagactgtatagtcgttgcttcacggatagtttgttcactagcatctgcaggatatgat |
318 |
Q |
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| T |
33888030 |
atattgatatgtatttgtatatcagatcctccatgcatattcagactgtatagtcgttgcttcacggatagtttgttcactagcatctgcaggatatgat |
33888129 |
T |
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| Q |
319 |
acatcaccttgtctgaaa |
336 |
Q |
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| T |
33888130 |
acatcaccttgtctgaaa |
33888147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 335 - 410
Target Start/End: Original strand, 33888948 - 33889023
Alignment:
| Q |
335 |
aagcatggaattttgttatgaactctttgtcatgtcttactgcagaaggttgcagaaccaagcaaggcttgagatt |
410 |
Q |
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| T |
33888948 |
aagcatggaattttgttatgaactctttgtcatgtcttactgcagaaggttgcagaaccaagcaaggcttgagatt |
33889023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 335 - 410
Target Start/End: Original strand, 33885563 - 33885640
Alignment:
| Q |
335 |
aagcatggaattttgttatgaactcttt--gtcatgtcttactgcagaaggttgcagaaccaagcaaggcttgagatt |
410 |
Q |
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| T |
33885563 |
aagcatgaaattttcttatgaactctttttgtcatgtcttactgcagaaggttgcagaaccaagcaaggcctgagatt |
33885640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 33887809 - 33887847
Alignment:
| Q |
63 |
aatatatgtaggtttctttaggggattgtaacatatgta |
101 |
Q |
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| T |
33887809 |
aatatatgtaggtttctttaggcgattgtaacatatgta |
33887847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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