View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8941_low_3 (Length: 706)
Name: NF8941_low_3
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 234 - 706
Target Start/End: Complemental strand, 18435587 - 18435126
Alignment:
| Q |
234 |
agattgggaagcaatagcagatcgtgaaccagacaagttagtgccgatggtgtcttcagatattttaactggagtgtcaaaaattaaattggaggactcc |
333 |
Q |
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| T |
18435587 |
agattgggaagcaatagcagatcgtgaaccagacaagttagtgcccatggtgtcttcagacattttaactggagtgtcaaaaattaaattggaggactcc |
18435488 |
T |
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| Q |
334 |
aaaagtccaaccccaaagcggcgtggaaggggaacattctcttatgataaagataaactttatagtgatcggttacttgatggttcgattattgatgatg |
433 |
Q |
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| T |
18435487 |
aaaagtccaaccccaaagcggcgtggaaggggaacattctcttatgataaagataaactttatagtgatcggttacttgatggttcgattattgatgatg |
18435388 |
T |
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| Q |
434 |
ttgaggacgatgaaactaatcgtggttcagatgataagaaagatacaactaactgtaagtacaccttgttatgtttcatcttttcagtaaaatctagatt |
533 |
Q |
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| T |
18435387 |
ttgaggacgatgaaactaatcgtggttcagaagataagaaagatacaactaactgtaagtacaccttgttatgtttcatcttttcagtaaaatctagatt |
18435288 |
T |
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| Q |
534 |
tgtttattttttacatccatagnnnnnnnnnnnnnnnnnnnattgcatcacattagttattttaaatggaggatagttagatgcttatggtttattaaat |
633 |
Q |
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| T |
18435287 |
tgtttattttttacatccatag---------ttttttttgtattgcatcacattagttattttaaatggaggatagttagatacttatgatttcttaaat |
18435197 |
T |
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| Q |
634 |
acccctgatcataattttcatgttccggtataattaggttttgtcagcataatatattttgttgaaaacactt |
706 |
Q |
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| T |
18435196 |
acccctgatcataattttcatgttccggtataattagg--ttgtcagcataatatattttgttgaaaacactt |
18435126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 18435758 - 18435592
Alignment:
| Q |
11 |
aagcagagatgagggtttattagagacaaatttgatattcatgaagggaaagttctaggataataggttattgaatttgagaggtcactcgtacattatg |
110 |
Q |
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| T |
18435758 |
aagcagagatgagggtttattagagacaagtttgatattcatgaagggatagttctaggataataggttattgaatttgagaggtcactcgtacattatg |
18435659 |
T |
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| Q |
111 |
ttatagcttcattttgatattagatttgttttcttcttgttcatggatgggcatgttggcctaaccg |
177 |
Q |
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| T |
18435658 |
ttatagcctcattttgatattagatttgttttcttgttgttcatgaatgggcatgttggcctaaccg |
18435592 |
T |
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