View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8941_low_31 (Length: 363)

Name: NF8941_low_31
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8941_low_31
NF8941_low_31
[»] chr4 (17 HSPs)
chr4 (11-363)||(51394684-51395041)
chr4 (11-357)||(5261726-5262075)
chr4 (137-303)||(30193861-30194027)
chr4 (137-303)||(23937403-23937570)
chr4 (56-212)||(31301366-31301519)
chr4 (137-362)||(8176483-8176708)
chr4 (137-216)||(10218806-10218885)
chr4 (137-216)||(40899965-40900044)
chr4 (137-303)||(48996115-48996281)
chr4 (137-356)||(6333289-6333518)
chr4 (137-216)||(32136815-32136894)
chr4 (137-301)||(43630610-43630774)
chr4 (139-216)||(40806700-40806777)
chr4 (137-356)||(52344710-52344931)
chr4 (225-303)||(36077603-36077681)
chr4 (324-363)||(31301261-31301300)
chr4 (324-363)||(40806896-40806935)
[»] chr5 (21 HSPs)
chr5 (12-262)||(35359013-35359263)
chr5 (11-363)||(17085006-17085354)
chr5 (137-362)||(12680956-12681180)
chr5 (137-356)||(333164-333387)
chr5 (137-303)||(42544689-42544855)
chr5 (137-216)||(30265675-30265754)
chr5 (137-216)||(32521101-32521180)
chr5 (137-216)||(2226764-2226843)
chr5 (137-216)||(36176981-36177060)
chr5 (137-216)||(9161105-9161184)
chr5 (137-216)||(10174195-10174274)
chr5 (137-216)||(12166049-12166128)
chr5 (137-202)||(23780870-23780935)
chr5 (137-202)||(23867823-23867888)
chr5 (137-216)||(36103492-36103571)
chr5 (225-303)||(27886390-27886468)
chr5 (169-362)||(38433664-38433868)
chr5 (283-357)||(9988892-9988966)
chr5 (169-216)||(9988769-9988816)
chr5 (225-303)||(667588-667666)
chr5 (225-303)||(30002042-30002120)
[»] chr2 (10 HSPs)
chr2 (11-257)||(42785384-42785630)
chr2 (11-296)||(18356941-18357219)
chr2 (137-363)||(44979656-44979886)
chr2 (137-312)||(25298137-25298312)
chr2 (137-363)||(34910276-34910510)
chr2 (137-216)||(19937001-19937080)
chr2 (137-216)||(44035432-44035511)
chr2 (137-363)||(11375867-11376098)
chr2 (137-216)||(17916741-17916820)
chr2 (225-303)||(9811421-9811499)
[»] chr7 (20 HSPs)
chr7 (11-216)||(1335440-1335629)
chr7 (54-300)||(31982805-31983045)
chr7 (11-216)||(10069328-10069525)
chr7 (30-210)||(36508460-36508632)
chr7 (11-120)||(7760349-7760458)
chr7 (137-216)||(5932767-5932846)
chr7 (137-216)||(31876522-31876601)
chr7 (137-216)||(43429291-43429370)
chr7 (137-216)||(22366573-22366652)
chr7 (137-216)||(24361174-24361253)
chr7 (137-216)||(24361380-24361459)
chr7 (152-303)||(32823634-32823784)
chr7 (128-212)||(7760231-7760315)
chr7 (137-357)||(27054617-27054843)
chr7 (137-216)||(13852431-13852510)
chr7 (137-216)||(47903357-47903436)
chr7 (137-216)||(48675235-48675314)
chr7 (225-303)||(11206332-11206410)
chr7 (324-363)||(18673268-18673307)
chr7 (244-309)||(36507971-36508036)
[»] chr3 (12 HSPs)
chr3 (45-301)||(9827582-9827828)
chr3 (137-363)||(6004274-6004504)
chr3 (137-363)||(21586727-21586960)
chr3 (137-212)||(35532038-35532113)
chr3 (137-213)||(27642049-27642125)
chr3 (137-303)||(50562462-50562622)
chr3 (137-216)||(32880419-32880498)
chr3 (137-213)||(33002643-33002719)
chr3 (225-303)||(34794625-34794703)
chr3 (137-193)||(39098084-39098140)
chr3 (137-216)||(43030548-43030629)
chr3 (225-303)||(51149631-51149709)
[»] chr1 (14 HSPs)
chr1 (19-356)||(42789379-42789713)
chr1 (137-301)||(1161629-1161792)
chr1 (137-301)||(51252301-51252465)
chr1 (137-303)||(33474478-33474643)
chr1 (137-216)||(44918664-44918743)
chr1 (135-216)||(29389155-29389236)
chr1 (137-216)||(24910934-24911013)
chr1 (137-216)||(45691919-45691998)
chr1 (137-213)||(16529375-16529451)
chr1 (137-216)||(32954171-32954249)
chr1 (137-216)||(33910657-33910736)
chr1 (150-216)||(39256530-39256596)
chr1 (283-356)||(44918520-44918593)
chr1 (324-356)||(51252493-51252525)
[»] chr8 (11 HSPs)
chr8 (54-216)||(33068380-33068534)
chr8 (137-363)||(10661119-10661350)
chr8 (137-216)||(14549350-14549429)
chr8 (137-216)||(36827673-36827752)
chr8 (137-216)||(30392203-30392282)
chr8 (137-216)||(6200728-6200807)
chr8 (137-216)||(3682042-3682121)
chr8 (138-216)||(18169905-18169983)
chr8 (138-216)||(18633471-18633549)
chr8 (324-363)||(30392104-30392143)
chr8 (172-216)||(36910252-36910296)
[»] scaffold0059 (2 HSPs)
scaffold0059 (137-277)||(69416-69556)
scaffold0059 (324-356)||(69618-69650)
[»] scaffold0013 (2 HSPs)
scaffold0013 (137-262)||(128718-128843)
scaffold0013 (137-216)||(106157-106236)
[»] chr6 (12 HSPs)
chr6 (137-216)||(10390907-10390986)
chr6 (137-216)||(15859851-15859930)
chr6 (149-363)||(35040114-35040327)
chr6 (128-216)||(5287780-5287868)
chr6 (137-213)||(25136897-25136973)
chr6 (137-363)||(10590816-10591051)
chr6 (141-216)||(33550446-33550521)
chr6 (141-215)||(10494260-10494334)
chr6 (137-216)||(13801858-13801937)
chr6 (225-303)||(12270587-12270665)
chr6 (324-363)||(10391100-10391139)
chr6 (324-357)||(10494459-10494492)
[»] scaffold0308 (1 HSPs)
scaffold0308 (225-303)||(5857-5935)
[»] scaffold0029 (1 HSPs)
scaffold0029 (140-216)||(40459-40535)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 51395041 - 51394684
Alignment:
Q  11 tttggtggtatgttatgctagtttatgacacaggtaatacatgactatattaaagcagaacaatacattgttggtattgaaaataaaagtttaggatcta 110  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  51395041 tttggtggtattttatgctagtttatgacacatgtaatatatgactatattaaaggagaacaatacattgttggtattgaaaataaaaatttaggatcta 51394942  T
Q  111 tgcaattcatgtataattgtatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  51394941 tgcaattcatgtataattgtatagtcatattttatcatgtaaacagcaatataaaatgtcctatgtttattttgtaataagttggcaatattagaattaa 51394842  T
Q  211 tgtaatgnnnnnnnatctcgcgataaaccggatcaactgaaccaatcaaagctaca-----ttagtttggttggaaagactttttaaaaatcaaccgagt 305  Q
    ||||||        |||||||||||||||| ||||||||||||||||||||  |||     || |||||||||||||||||||||||||||||||||| |    
T  51394841 tgtaatatttttttatctcgcgataaaccgcatcaactgaaccaatcaaagtcacattggtttggtttggttggaaagactttttaaaaatcaaccgaat 51394742  T
Q  306 caaaccgcatgnnnnnnnatctcgcggtttgaatgacttttatgctcaaaactgaacc 363  Q
    |||||||||||       ||||||||||||| ||||||||||||||||||||||||||    
T  51394741 caaaccgcatgcttttttatctcgcggtttggatgacttttatgctcaaaactgaacc 51394684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 5261726 - 5262075
Alignment:
Q  11 tttggtggtatgttatgctagtttatgacacaggtaatacatgactatattaaagcagaacaatacattgttggtattgaaaataaaagtttaggatcta 110  Q
    ||||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  5261726 tttggaggtatattctgccagtttatgacacaggtaatacatgactatattaaagcagaacaatatattgttggtattgaaaataaaagtttag-atcta 5261824  T
Q  111 tgcaattcatgtataattgtatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||||| ||||||||||| ||||    
T  5261825 tgcaattcatgtataattgtatagtcatattttatcatgtaaacaacaaaataaaatgtccaatgtttattttttaacaagttggcaatattagagttaa 5261924  T
Q  211 tgtaatgnnnnnnnatctcgcgataaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccg-----agt 305  Q
    ||||||        |||||||||||||||| |||||| ||||||||| |||||| ||| |||||||| | | |||||||||||||||||| |     |      
T  5261925 tgtaat-atttttaatctcgcgataaaccgcatcaaccgaaccaatccaagctaaattggtttggtttggatgactttttaaaaatcaactgaactaaac 5262023  T
Q  306 caaaccgcatgnnnnnnnatctcgcggtttgaatgacttttatgctcaaaac 357  Q
    |||||||||||       |||| |||||||| ||||||||||||||||||||    
T  5262024 caaaccgcatgcttttttatcttgcggtttggatgacttttatgctcaaaac 5262075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 30193861 - 30194027
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||        ||||||||||||    
T  30193861 atattttatcatataaacatcaaaataaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatatttttttatctcgcgataa 30193960  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    |||| || ||| ||||||||| || |  |||| |||||||| | | |||||||||||||||||||||    
T  30193961 accgcataaaccgaaccaatccaaaccgcattggtttggtttggatgactttttaaaaatcaaccga 30194027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 23937403 - 23937570
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat-gnnnnnnnatctcgcgata 235  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||         ||||||| |||    
T  23937403 atattttatcatataaacaacaaaataaaatgtcctatgtttattttgtaacaagtttgcaatattagagttaatgtaatatttttttaatctcgcaata 23937502  T
Q  236 aaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    ||||| |  ||| ||||||||| ||||| |||| |||||||| | | |||||||||||||||||||||    
T  23937503 aaccgcacaaaccgaaccaatccaagctgcattggtttggtttggatgactttttaaaaatcaaccga 23937570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 212
Target Start/End: Complemental strand, 31301519 - 31301366
Alignment:
Q  56 tatattaaagcagaacaatacattgttggtattgaaaataaaagtttaggatctatgcaattcatgtataattgtatagtcatattttatcatgtaaa-- 153  Q
    |||||||| | |||||  || ||||||||||||||||||||||||||||||| ||||||||||| |||||        ||||||||||||||||||||      
T  31301519 tatattaaggaagaacgttatattgttggtattgaaaataaaagtttaggatttatgcaattcaggtata--------gtcatattttatcatgtaaatt 31301428  T
Q  154 ---caacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatg 212  Q
       ||||||||||||| ||||||||| |||||||||| ||||| ||||||||||| ||||||    
T  31301427 taacaacaaaataaaacgtcctatgtttattttgtaacaagttggcaatattagagttaatg 31301366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 362
Target Start/End: Original strand, 8176483 - 8176708
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    |||||||||||| |||||| |||||||||||||||| ||| |||||||||| ||||  ||||||||||| ||||||||||        || || ||||||    
T  8176483 atattttatcatataaacagcaaaataaaatgtcctgtgtttattttgtaacaagtgggcaatattagagttaatgtaatatttttttatttcacgataa 8176582  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccgagtcaaaccgcatgnnnnnnnatctcgcggtttg 336  Q
    |||| |  ||| ||||||||| ||||  |||| ||||||||   | ||||||||||||||||||| |  |||||||||||       ||||  | |||||    
T  8176583 accgcacaaaccgaaccaatccaagccgcattggtttggtttagatgactttttaaaaatcaaccaaaccaaaccgcatgcgtttttatcttacagtttg 8176682  T
Q  337 aatgacttttatgctcaaaactgaac 362  Q
    |||||||||||| ||||||| |||||    
T  8176683 aatgacttttatcctcaaaattgaac 8176708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 10218885 - 10218806
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  10218885 atattttatcatataaacaacaaaataaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaat 10218806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 40899965 - 40900044
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||    
T  40899965 atattttatcatataaacaacaaaataaaatgccctatgtttattttgtaataagttggcaatattagagttaatgtaat 40900044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 48996281 - 48996115
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||||| | |||||  |||||||||| ||||||||||        |||| |||||||    
T  48996281 atattttatcatgaaaacaacaaaataaaatttcctatgtttattttgtgacaagttgacaatattagagttaatgtaatatttttttatcttgcgataa 48996182  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    |||| |  ||  ||||||||| ||||  |||| |||||||| | |  ||||||||||||||||||||    
T  48996181 accgcacaaatcgaaccaatccaagccgcattggtttggtttggataactttttaaaaatcaaccga 48996115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 356
Target Start/End: Complemental strand, 6333518 - 6333289
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||| | ||||||||| ||||||||||        ||||||||||||    
T  6333518 atattttatcatataaacatcaaaataaaatgtcctatgtttattttgtaacaagttggtaatattagagttaatgtaatttttttttatctcgcgataa 6333419  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttgg----------ttggaaagactttttaaaaatcaaccgagtcaaaccgcatgnnnnnnnatc 326  Q
    |||| |  ||| ||||||||| || |  |||| ||||||          || | | ||||||||||||||||||| |  |||||||||||       |||    
T  6333418 accgcacaaaccgaaccaatccaaaccgcattggtttggtttggtttgatttggatgactttttaaaaatcaaccaaaccaaaccgcatgcttttttatc 6333319  T
Q  327 tcgcggtttgaatgacttttatgctcaaaa 356  Q
    |||||||||| ||||||||| |||||||||    
T  6333318 tcgcggtttggatgacttttttgctcaaaa 6333289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 32136894 - 32136815
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||  |||||||||| ||||||||||    
T  32136894 atattttatcatataaacaacaaaataaaatgtcctatgtttattttgttacaagttgacaatattagagttaatgtaat 32136815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 301
Target Start/End: Complemental strand, 43630774 - 43630610
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||| |||| || |  ||||||||||| ||||||||||        ||||| ||||||    
T  43630774 atattttatcatataaacaacaaaataaaatgtcctatgtttatttcgtaacaaatatgcaatattagagttaatgtaatttttttttatctcacgataa 43630675  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaacc 301  Q
    || | |  ||| ||||||||| ||||  |||| ||||| || | | |||||||||||||||||||    
T  43630674 actgcacaaaccgaaccaatccaagccgcattggtttgatttggatgactttttaaaaatcaacc 43630610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 40806700 - 40806777
Alignment:
Q  139 attttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||| ||||||||||||||||||||||||||| |||| ||||| |||||  |||||||||| ||||||||||    
T  40806700 attttatcatataaacaacaaaataaaatgtcctatgtttattatgtaacaagttgacaatattagagttaatgtaat 40806777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 356
Target Start/End: Complemental strand, 52344931 - 52344710
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatg--tgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgat 234  Q
    |||||||||||| |||||| ||||||||||| || ||||  | |||||||||| ||||| ||||||||||| |||||| |||        |||| | |||    
T  52344931 atattttatcatataaacagcaaaataaaatatcttatgtttatattttgtaacaagttggcaatattagagttaatggaatatttttttatcttgtgat 52344832  T
Q  235 aaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccgagtcaaaccgcatgnnnnnnnatctcgcggtt 334  Q
    |||||| |  ||| ||||||||| || |  |||| |||||||| | | |||||||||||||| || |||  |||||||||||       ||||| |||||    
T  52344831 aaaccgcacaaaccgaaccaatccaatccgcattggtttggtttggatgactttttaaaaattaatcgaaccaaaccgcatgcttttttatctcacggtt 52344732  T
Q  335 tgaatgacttttatgctcaaaa 356  Q
    || |||||||||||||||||||    
T  52344731 tggatgacttttatgctcaaaa 52344710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 36077681 - 36077603
Alignment:
Q  225 atctcgcgataaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    |||||||||| ||||| |||||||||||||||| || |   ||| |||||||| | | |||||||||||||||||||||    
T  36077681 atctcgcgattaaccgcatcaactgaaccaatccaaaccgtattggtttggtttggatgactttttaaaaatcaaccga 36077603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 324 - 363
Target Start/End: Complemental strand, 31301300 - 31301261
Alignment:
Q  324 atctcgcggtttgaatgacttttatgctcaaaactgaacc 363  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  31301300 atctcgcggtttggatgacttttatgctcaaaactaaacc 31301261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 324 - 363
Target Start/End: Original strand, 40806896 - 40806935
Alignment:
Q  324 atctcgcggtttgaatgacttttatgctcaaaactgaacc 363  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  40806896 atctcgcggtttggatgacttttatgctcaaaaccgaacc 40806935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 35359263 - 35359013
Alignment:
Q  12 ttggtggtatgttatgctagtttatgacacaggtaatacatgactatattaaagcagaacaatacattgttggtattgaaaataaaagtttaggatctat 111  Q
    ||||||||||||| ||| ||||||| ||||| |||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||||||||| ||    
T  35359263 ttggtggtatgttctgccagtttataacacaagtaatacatgactatattaacgcataaaaatatattgttggtattgaaaataaaagtttaggatcaat 35359164  T
Q  112 gcaattcatgtataattgtatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaat 211  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||||| |||||    
T  35359163 gaaattcatgtataattgtatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtttatgttgtaacaagttggcaatattagagttaat 35359064  T
Q  212 gtaatgnnnnnnnatctcgcgataaaccggatcaactgaaccaatcaaagc 262  Q
    |||||        |||||||||||||||| |||||| |||| |||| ||||    
T  35359063 gtaatacttttttatctcgcgataaaccgcatcaaccgaactaatccaagc 35359013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 363
Target Start/End: Original strand, 17085006 - 17085354
Alignment:
Q  11 tttggtggtatgttatgctagtttatgacacaggtaatacatgactatattaaagcagaacaatacattgttggtattgaaaataaaagtttaggatcta 110  Q
    |||||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||  |||||||||||||||||||||||||||||    
T  17085006 tttggtggtatgttctgccagtttatgacacatgtaatacatgactatattaaggcagaacaatatatt-atggtattgaaaataaaagtttaggatcta 17085104  T
Q  111 tgcaattcatgtataattgtatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaa 210  Q
    |||||||||        |||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||| ||||  ||||||||||| ||||    
T  17085105 tgcaattca--------tgtatagtcatattttatgatgtaaacaacaaaataaaatgtcttgtgtttattttgtaagaagtcggcaatattagagttaa 17085196  T
Q  211 tgtaatgnnnnnnnatctcgcgataaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccgagtcaaac 310  Q
      ||||        ||||| ||||||| || | |||| |||| |||| |||| ||||| ||||| |||| | |||||||||||||||||||||  |||||    
T  17085197 cataatatttttttatctcacgataaatcgcaccaaccgaacgaatccaagccacattggtttgattgggatgactttttaaaaatcaaccgaaccaaac 17085296  T
Q  311 -----cgcatgnnnnnnnatctcgcggtttgaatgacttttatgctcaaaactgaacc 363  Q
         ||||||       |||||| |||||| ||||||||||||||||||||||||||    
T  17085297 taaatcgcatgcttttttatctcgtggtttggatgacttttatgctcaaaactgaacc 17085354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 137 - 362
Target Start/End: Original strand, 12680956 - 12681180
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    |||||||||||| |||||||||||||||||| |||||||| |||||||||| ||||| ||||||||||| ||||||||||        ||||| ||||||    
T  12680956 atattttatcatataaacaacaaaataaaatatcctatgtttattttgtaacaagttggcaatattagagttaatgtaat-attttttatctcacgataa 12681054  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccgagtcaaaccgcatgnnnnnnnatctcgcggtttg 336  Q
    || | |  |||  |||||||| || |  |||| |||||||| | | || ||||||||||||||||||  |||||| ||||       |||||||||| ||    
T  12681055 actgcacaaacctaaccaatccaaaccgcattggtttggtttggatgaatttttaaaaatcaaccgaaccaaaccacatgcttttttatctcgcggtctg 12681154  T
Q  337 aatgacttttatgctcaaaactgaac 362  Q
    ||||||||||||||||||||| ||||    
T  12681155 aatgacttttatgctcaaaaccgaac 12681180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 137 - 356
Target Start/End: Original strand, 333164 - 333387
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    |||||||||||| ||||||||||||||||||||| ||||| |||||||||| |||||  |||||||||| ||||||||||        ||||||||||||    
T  333164 atattttatcatataaacaacaaaataaaatgtcatatgtttattttgtaacaagttgacaatattagagttaatgtaat-attttttatctcgcgataa 333262  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccgagtcaaac-----cgcatgnnnnnnnatctcgcg 331  Q
    |||| |  |||  |||||||  ||||| |||| |||||||| | | ||||||||||||||||| |||  |||||     ||||||       ||||||||    
T  333263 accgcacaaaccaaaccaattcaagctgcattggtttggtttggatgactttttaaaaatcaatcgaaccaaaccaattcgcatgcttttctatctcgcg 333362  T
Q  332 gtttgaatgacttttatgctcaaaa 356  Q
    ||||| |||||||||||||||||||    
T  333363 gtttggatgacttttatgctcaaaa 333387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 42544855 - 42544689
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    |||||||||||| |||||| ||||||||||||| |||||| |||||||||| ||||| ||||||||||| ||||||||||        ||||||||||||    
T  42544855 atattttatcatataaacatcaaaataaaatgttctatgtttattttgtaacaagttggcaatattagagttaatgtaatatttttttatctcgcgataa 42544756  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    |||| |  ||| ||||||||| || |  |||| |||||||| | | ||||| |||||||||||||||    
T  42544755 accgcacaaaccgaaccaatccaaaccgcattggtttggtttggatgacttcttaaaaatcaaccga 42544689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 30265675 - 30265754
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||    
T  30265675 atattttatcatataaacagcaaaataaaatgtcctatgtttattttgtaataagttggcaatattagagttaatgtaat 30265754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 32521101 - 32521180
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  32521101 atattttatcatataaacaacaaaataaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaat 32521180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 2226764 - 2226843
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  2226764 atattttatcatataaacatcaaaataaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaat 2226843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 36176981 - 36177060
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  36176981 atattttatcatataaacagcaaaataaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaat 36177060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 9161184 - 9161105
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||| | ||||| ||||||||||| ||||||||||    
T  9161184 atattttatcatataaacatcaaaataaaatgtcctatgtttattttgtgacaagttggcaatattagagttaatgtaat 9161105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 10174274 - 10174195
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||| |||||||||||||| ||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  10174274 atattttatcatataaacagcaaaataaaatgtcatatgtttattttgtaacaagttggcaatattagagttaatgtaat 10174195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 12166049 - 12166128
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||| |||||||||||||| ||||| |||||||||| |||||  |||| ||||| ||||||||||    
T  12166049 atattttatcatataaacagcaaaataaaatgtcatatgtttattttgtaacaagttgacaatgttagagttaatgtaat 12166128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 23780935 - 23780870
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatatt 202  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||| |||| ||||| ||||||||    
T  23780935 atattttatcatataaacatcaaaataaaatgtcctatgtttatttggtaacaagttggcaatatt 23780870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 23867888 - 23867823
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatatt 202  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||| |||| ||||| ||||||||    
T  23867888 atattttatcatataaacatcaaaataaaatgtcctatgtttatttggtaacaagttggcaatatt 23867823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 36103492 - 36103571
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||| ||||||| |||||| ||||||||||| |  ||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  36103492 atatattatcatataaacagcaaaataaaatattatatgtttattttgtaacaagttggcaatattagagttaatgtaat 36103571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 27886390 - 27886468
Alignment:
Q  225 atctcgcgataaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    |||||||||| ||||| |||||||||||||||| || |  |||| |||||||| | | |||||||||||||||||||||    
T  27886390 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatgactttttaaaaatcaaccga 27886468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 362
Target Start/End: Complemental strand, 38433868 - 38433664
Alignment:
Q  169 tcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnn-atctcgcgataaaccggatcaactgaaccaatcaaagctacat 267  Q
    |||||||| |||||||||| ||||| ||||||||||| ||||||||||         |||||||||||||||| |  ||| ||||||||| ||||  |||    
T  38433868 tcctatgtttattttgtaacaagttggcaatattagagttaatgtaatattttttttatctcgcgataaaccgcacaaaccgaaccaatccaagccgcat 38433769  T
Q  268 tagtttggttgga-----aagactttttaaaaatcaaccgagtcaaac-----cgcatgnnnnnnnatctcgcggtttgaatgacttttatgctcaaaac 357  Q
    | |||||||| |      | |||||||||||||||||||||  |||||     ||||||       ||||||||||||||||||||||||||||||||||    
T  38433768 tggtttggtttggtttggaggactttttaaaaatcaaccgaaccaaactaaaccgcatgattttttatctcgcggtttgaatgacttttatgctcaaaac 38433669  T
Q  358 tgaac 362  Q
     ||||    
T  38433668 cgaac 38433664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 9988892 - 9988966
Alignment:
Q  283 gactttttaaaaatcaaccgagtcaaaccgcatgnnnnnnnatctcgcggtttgaatgacttttatgctcaaaac 357  Q
    ||||||||||||||||||||| ||||||| ||||       |||||| |||||| |||||||||||| |||||||    
T  9988892 gactttttaaaaatcaaccgaatcaaaccacatgtttttttatctcgtggtttggatgacttttatgttcaaaac 9988966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 9988769 - 9988816
Alignment:
Q  169 tcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  9988769 tcctatgtttattttgtaacaagttggcaatattagagttaatgtaat 9988816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 667588 - 667666
Alignment:
Q  225 atctcgcgataaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    ||||||||||  || | |||||||||||||||| || |  |||| |||||||| | | |||||||||||||||||||||    
T  667588 atctcgcgatttactgcatcaactgaaccaatccaaaccgcattggtttggtttggatgactttttaaaaatcaaccga 667666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 30002120 - 30002042
Alignment:
Q  225 atctcgcgataaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    |||||| ||| ||||| |||||||||||||||| || |  |||| |||||||| | | ||||||||||||| |||||||    
T  30002120 atctcgtgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatgactttttaaaaaacaaccga 30002042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 42785384 - 42785630
Alignment:
Q  11 tttggtggtatgttatgctagtttatgacacaggtaatacatgactatattaaagcagaacaatacattgttggtattgaaaataaaagtttaggatcta 110  Q
    |||||||||||||||||| | ||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||| |||||    
T  42785384 tttggtggtatgttatgccactttatgacacatgtaatacatgactatattaacgcataacaatatattgttggtgttgaaaataaaagtttagaatcta 42785483  T
Q  111 tgcaattcatgtataattgtatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaa 210  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||| ||||    
T  42785484 tgcaattcatgtattattgtatagtcatattttattatgtaaacaacaaaataaaatgtcatatgtttattttgtaataatttggcaatattagagttaa 42785583  T
Q  211 tgtaatgnnnnnnnatctcgcgataaaccggatcaactgaaccaatc 257  Q
    ||||||        |||||||||||||||| |||||  |||||||||    
T  42785584 tgtaatatttttttatctcgcgataaaccgcatcaatcgaaccaatc 42785630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 18357219 - 18356941
Alignment:
Q  11 tttggtggtatgttatgctagtttatgacacaggtaatacatgactatattaaagcagaacaatacattgttggtattgaaaataaaagtttaggatcta 110  Q
    |||||||||||||| ||   ||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||    
T  18357219 tttggtggtatgttctgtcggtttatgacacaggtaatacatgactatattaaggcaaaacaatatattgttggtattgaaaataaaagtttaggatcta 18357120  T
Q  111 tgcaattcatgtataattgtatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaa 210  Q
    || | ||||        |||||||||||||||||||||||||| | |||||||||||||| ||||| |||||||||| ||||| ||||||||||| ||||    
T  18357119 tgtagttca--------tgtatagtcatattttatcatgtaaaaagcaaaataaaatgtcttatgtttattttgtaacaagttggcaatattagagttaa 18357028  T
Q  211 tgtaat-gnnnnnnnatctcgcgataaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaat 296  Q
    ||||||         |||||||||||||||| |||||| ||||||||| ||||  |||| |||||||| ||| ||||||||||||||    
T  18357027 tgtaatattttttttatctcgcgataaaccgcatcaacagaaccaatccaagccgcattggtttggtttgaatgactttttaaaaat 18356941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 137 - 363
Target Start/End: Original strand, 44979656 - 44979886
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    |||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||        ||||||||||||    
T  44979656 atattttatcatataaacaacaaaataaaatgccctatgtttattttgtaataagttggcaatattagagttaatgtaat-attttttatctcgcgataa 44979754  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccg-----agtcaaaccgcatgnnnnnnnatctcgcg 331  Q
    |||| |  | | ||||||||| || |  |||| |||||||| | | ||||||||||||||||||||     |  |||||||||||       ||||||||    
T  44979755 accgcacaagccgaaccaatccaaaccgcattggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttatctcgcg 44979854  T
Q  332 gtttgaatgacttttatgctcaaaactgaacc 363  Q
    ||||| |||||||||||||||||||| |||||    
T  44979855 gtttggatgacttttatgctcaaaaccgaacc 44979886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 137 - 312
Target Start/End: Original strand, 25298137 - 25298312
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    |||| ||||||| |||||||||||||||||| |||||||| ||||||| || ||||| ||||||||||| ||||||||||        ||||||||||||    
T  25298137 atatattatcatataaacaacaaaataaaatatcctatgtttattttgcaacaagttggcaatattagagttaatgtaatattttttcatctcgcgataa 25298236  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccgagtcaaaccg 312  Q
    |||| |  ||| ||||||||| || |   |||||||||||| | | |||||||||||||||||||||  |||||||    
T  25298237 accgcacaaaccgaaccaatccaaaccgtattagtttggtttggatgactttttaaaaatcaaccgaaccaaaccg 25298312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 363
Target Start/End: Complemental strand, 34910510 - 34910276
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatg-nnnnnnnatctcgcgata 235  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| || || ||||||||||| |||||||||||        ||||||| |||    
T  34910510 atattttatcatataaacaacaaaataaaatgtcctatgtttattttgtaacaaattggcaatattagagttaatgtaatgttttttttatctcgcaata 34910411  T
Q  236 aaccggatcaactgaaccaatcaaagctacattagtttggttgga---aagactttttaaaaatcaaccgagtcaaaccgca----tgnnnnnnnatctc 328  Q
    ||||| |  ||| |||| |||| ||||  |||| |||||||| ||   | ||||||||||||||||||  |  |||||||||    |        |||||    
T  34910410 aaccgtacaaaccgaactaatccaagccgcattggtttggtttgaatgatgactttttaaaaatcaacaaaaccaaaccgcatatgtttttttttatctc 34910311  T
Q  329 gcggtttgaatgacttttatgctcaaaactgaacc 363  Q
    ||||||||||||| |||||||||||||||||||||    
T  34910310 gcggtttgaatgatttttatgctcaaaactgaacc 34910276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 19937001 - 19937080
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  19937001 atattttatcatataaacaacaaaataaaatgtcttatgtttattttgtaacaagttggcaatattagagttaatgtaat 19937080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 44035511 - 44035432
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||||||||||||||||||||| |  |||||||||| ||||| ||||||||||| ||||||||||    
T  44035511 atattttatcatataaacaacaaaataaaatgtcctacgattattttgtaacaagttggcaatattagagttaatgtaat 44035432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 363
Target Start/End: Complemental strand, 11376098 - 11375867
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    |||||||||||| |||||| |||||||||||||| ||||| |||||||||| |||||  |||||||||| |||||| |||        |||| |||||||    
T  11376098 atattttatcatataaacatcaaaataaaatgtcttatgtttattttgtaacaagttgacaatattagagttaatgaaatatttttttatcttgcgataa 11375999  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccgagtcaaacc-----gcatgnnnnnnnatctcgcg 331  Q
    |||| |  ||  ||| ||||| || |  |||| |||||||| | | |||||||||||||||||||||  ||||||     |||||       ||||||||    
T  11375998 accgcacaaaacgaatcaatccaatccgcattggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaactgcatgtttttttatctcgcg 11375899  T
Q  332 gtttgaatgacttttatgctcaaaactgaacc 363  Q
    ||||| |||||||||||||| ||||| |||||    
T  11375898 gtttggatgacttttatgcttaaaaccgaacc 11375867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 17916741 - 17916820
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| ||||||||| ||||||||||||||||| |||||||||| ||||| |||| |||||| |||| |||||    
T  17916741 atattttatcatataaacaacataataaaatgtcctatgtttattttgtaacaagttggcaacattagagttaacgtaat 17916820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 9811499 - 9811421
Alignment:
Q  225 atctcgcgataaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    |||||||||| ||||| |||||||||||||||| || |  |||| |||||||| | | |||||||||||||||||||||    
T  9811499 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatgactttttaaaaatcaaccga 9811421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 1335629 - 1335440
Alignment:
Q  11 tttggtggtatgttatgctagtttatgacacaggtaatacatgactatattaaagcagaacaatacattgttggtattgaaaataaaagtttaggatcta 110  Q
    |||||||||||||| ||| |||||||||||| ||||||||||||| ||||||||||||||               |||||||||||||||||||||||||    
T  1335629 tttggtggtatgttctgcgagtttatgacactggtaatacatgac-atattaaagcagaa---------------attgaaaataaaagtttaggatcta 1335546  T
Q  111 tgcaattcatgtataattgtatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||    
T  1335545 tgcaattcatgtataattgtatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtttattttgtaataagttggcaatattagagttaa 1335446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 54 - 300
Target Start/End: Original strand, 31982805 - 31983045
Alignment:
Q  54 actatattaaagcagaacaatacattgttggtattgaaaataaaagtttaggatctatgcaattcatgtataattgtatagtcatattttatcatgtaaa 153  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| ||    
T  31982805 actatattaacgcataacaatatattgttggtattgaaaataaaagtttaggatctatgcaattcatgtataat--------catattttatcatgttaa 31982896  T
Q  154 caacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgta--atgnnnnnnnatctcgcgataaaccggatcaactgaa 251  Q
    || |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||  ||        ||||||| |||||||| | |||| |||    
T  31982897 cagcaaaataaaatgtcctatgtttattttgtaataagttggcaatattagagttaatgtaatatatttttttatctcgcaataaaccgcaccaaccgaa 31982996  T
Q  252 ccaatcaaagctacattagtttggttggaaagactttttaaaaatcaac 300  Q
    |||||| || | || || |||||||| | | ||||||||||||||||||    
T  31982997 ccaatccaacccacgttggtttggtttggatgactttttaaaaatcaac 31983045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 10069525 - 10069328
Alignment:
Q  11 tttggtggtatgttatgctagtttatgacacaggtaatacatgactatattaaag-cagaacaatacattgttggtattgaaaataaaagtttaggatct 109  Q
    ||||||||| |||| | | ||||||||||||||||||||||||| |||||||| | |||||||||| |||||||||||||||||||||||||| ||||||    
T  10069525 tttggtggtgtgttctaccagtttatgacacaggtaatacatgattatattaagggcagaacaatatattgttggtattgaaaataaaagtttgggatct 10069426  T
Q  110 atgcaattcatgtataattgtatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaatta 209  Q
    |||| |||||        ||||||||||||||||||||| |||||| ||||||||||||||| |||| |||||||||| ||||| ||||||||||| |||    
T  10069425 atgc-attca--------tgtatagtcatattttatcatctaaacagcaaaataaaatgtcccatgtttattttgtaacaagttggcaatattagagtta 10069335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 30 - 210
Target Start/End: Complemental strand, 36508632 - 36508460
Alignment:
Q  30 agtttatgacacaggtaatacatgactatattaaagcagaacaatacattgttggtattgaaaataaaagtttaggatctatgcaattcatgtataattg 129  Q
    ||||||||||||| ||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |        ||    
T  36508632 agtttatgacacatgtaatacatgattatattaaggcaaaacaatatattgttggtattgaaaataaaagtttaggatctatgcaattga--------tg 36508541  T
Q  130 tatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaa 210  Q
    ||| ||| ||||||||||||||||||||||||||||||||| | ||| |||||||||  || |  ||||||||||||||||    
T  36508540 tattgtcctattttatcatgtaaacaacaaaataaaatgtcatgtgtttattttgtagcaaatcggcaatattagaattaa 36508460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 7760458 - 7760349
Alignment:
Q  11 tttggtggtatgttatgctagtttatgacacaggtaatacatgactatattaaagcagaacaatacattgttggtattgaaaataaaagtttaggatcta 110  Q
    |||||||||||||| ||| ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  7760458 tttggtggtatgttctgccagtttatgatacatgtaatacatgactatattaaggcagaacaatacattgttggtattgaaaataaaagtttaggaacta 7760359  T
Q  111 tgcaattcat 120  Q
    || |||||||    
T  7760358 tgaaattcat 7760349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 5932846 - 5932767
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||||||||||||||| |||||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  5932846 atattttatcatataaacaacaaaataaaatttcctatgtttattttgtaacaagttggcaatattagagttaatgtaat 5932767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 31876522 - 31876601
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| ||||||||||||||||||||||||||  |||||||||| ||||| ||||||||||| ||||||||||    
T  31876522 atattttatcatataaacaacaaaataaaatgtcctatgattattttgtaacaagttggcaatattagagttaatgtaat 31876601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 43429370 - 43429291
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  43429370 atattttatcatataaacatcaaaataaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaat 43429291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 22366652 - 22366573
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||||| || || ||||||||||| ||||||||||    
T  22366652 atattttatcatataaacatcaaaataaaatgtcctatgtttattttgtaacaaattggcaatattagagttaatgtaat 22366573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 24361174 - 24361253
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||  |||||||||| ||||||||||    
T  24361174 atattttatcatataaacatcaaaataaaatgtcctatgtttattttgtaacaagttgacaatattagagttaatgtaat 24361253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 24361380 - 24361459
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||  |||||||||| ||||||||||    
T  24361380 atattttatcatataaacatcaaaataaaatgtcctatgtttattttgtaacaagttgacaatattagagttaatgtaat 24361459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 303
Target Start/End: Complemental strand, 32823784 - 32823634
Alignment:
Q  152 aacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataaaccggatcaactgaa 251  Q
    |||| |||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||        |||||||||||||||| |  ||| |||    
T  32823784 aacagcaaaataaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaat-attttttatctcgcgataaaccgcacaaaccgaa 32823686  T
Q  252 ccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    |||||| || |  ||||  ||||||| | | |||||||||||||||||||||    
T  32823685 ccaatccaaaccgcattgatttggtttggatgactttttaaaaatcaaccga 32823634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 7760315 - 7760231
Alignment:
Q  128 tgtatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatg 212  Q
    |||||||||||||||||||| ||||| | |||||||||||||| ||||| |||||||||| ||||  ||||||||||| ||||||    
T  7760315 tgtatagtcatattttatcaagtaaagagcaaaataaaatgtcatatgtttattttgtaacaagtcggcaatattagagttaatg 7760231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 357
Target Start/End: Original strand, 27054617 - 27054843
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat-gnnnnnnnatctcgcgata 235  Q
    |||||||||||| |||||| |||||||||||||  ||||| |||||||||| ||||| | ||||||||| ||||||||||         |||||| ||||    
T  27054617 atattttatcatataaacatcaaaataaaatgttatatgtttattttgtaacaagttggaaatattagagttaatgtaatattttttttatctcgtgata 27054716  T
Q  236 aaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccg-----agtcaaaccgcatgnnnnnnnatctcgc 330  Q
    ||||| |  ||| ||||||||| || |  |||| |||||||| | | | ||||||||||||||||||     |  |||||||||||       |||||||    
T  27054717 aaccgcacaaaccgaaccaatccaaaccgcattggtttggtttggatggctttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttatctcgc 27054816  T
Q  331 ggtttgaatgacttttatgctcaaaac 357  Q
    |||||| ||||||||| ||||||||||    
T  27054817 ggtttggatgacttttttgctcaaaac 27054843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 13852510 - 13852431
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||| | |||||||||||||||||||| |||||||||  |||||  ||||||| || ||||||||||    
T  13852510 atattttatcatataaatagcaaaataaaatgtcctatgtttattttgtaccaagttgacaatattggagttaatgtaat 13852431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 47903436 - 47903357
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| ||||||||||||||||||||  ||||| |||||||||| ||  | ||||||||||| |||| |||||    
T  47903436 atattttatcatataaacaacaaaataaaatgtaatatgtttattttgtaacaacctggcaatattagagttaaagtaat 47903357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 48675314 - 48675235
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||| |||||||||||||||||| | |||||||||| || ||  |||||||||| ||||| ||||    
T  48675314 atattttatcatataaacagcaaaataaaatgtcctatatttattttgtaacaaattgacaatattagagttaatataat 48675235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 11206332 - 11206410
Alignment:
Q  225 atctcgcgataaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    |||||||||| ||||| |||||||||||||||| || |  |||| |||||||| | | |||||||||||||||||||||    
T  11206332 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatgactttttaaaaatcaaccga 11206410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 324 - 363
Target Start/End: Original strand, 18673268 - 18673307
Alignment:
Q  324 atctcgcggtttgaatgacttttatgctcaaaactgaacc 363  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  18673268 atctcgcggtttggatgacttttatgctcaaaaccgaacc 18673307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 36508036 - 36507971
Alignment:
Q  244 caactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccgagtcaaa 309  Q
    |||| ||||||||| ||||  |||| |||||||| | | ||||||||||||||||||||| |||||    
T  36508036 caaccgaaccaatccaagccgcattggtttggtttggatgactttttaaaaatcaaccgaatcaaa 36507971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 45 - 301
Target Start/End: Original strand, 9827582 - 9827828
Alignment:
Q  45 taatacatgactatattaaagcagaacaatacattgttggtattgaaaataaaagtttaggatctatgcaattcatgtataattgtatagtcatatttta 144  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||        ||||| ||    
T  9827582 taatacatgactatattaagtcagaacaatatattgttggtattgaaaataaatgtttaagatctatgcaattcatgtatattt--------atattata 9827673  T
Q  145 tcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataaaccggatc 244  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||||| ||||||||||| ||||||||||        |||||||||||||||| | |    
T  9827674 tcatgtaaacaacaaaataaaatgtcctatgtttattttgtatcaagttcgcaatattagagttaatgtaat--ttttttatctcgcgataaaccgcacc 9827771  T
Q  245 aactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaacc 301  Q
    ||||||||||||| ||||   ||| |||||||| | | |||||||||||||||||||    
T  9827772 aactgaaccaatccaagccgtattggtttggtttggatgactttttaaaaatcaacc 9827828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 363
Target Start/End: Original strand, 6004274 - 6004504
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    |||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||        ||||||||||||    
T  6004274 atattttatcatataaacaacaaaataaaatgccctatgtttattttgtaataagttggcaatattagagttaatgtaat-attttttatctcgcgataa 6004372  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccg-----agtcaaaccgcatgnnnnnnnatctcgcg 331  Q
    |||| |  ||| ||| ||||| || |  |||| |||||||| | | ||||||||||||||||||||     |  |||||||||||       ||||||||    
T  6004373 accgcacaaaccgaatcaatccaaaccgcattggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttatctcgcg 6004472  T
Q  332 gtttgaatgacttttatgctcaaaactgaacc 363  Q
    ||||| |||||||||||||| ||||| |||||    
T  6004473 gtttggatgacttttatgctgaaaaccgaacc 6004504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 137 - 363
Target Start/End: Original strand, 21586727 - 21586960
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaata-ttagaattaatgtaa-tgnnnnnnnatctcgcgat 234  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| |||||| ||||| ||||||||| |        ||||||||||    
T  21586727 atattttatcatataaacaacaaaataaaatgtcctatgtttattttgtaacaagttggcaatatttagagttaatgtaattttttttttatctcgcgat 21586826  T
Q  235 aaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccgagtcaaacc-----gcatgnnnnnnnatctcg 329  Q
    |||| | |  ||| ||||||||| ||||| |||| |||||||| | | |||||||||||||||||| || |||||||     |||||       ||||||    
T  21586827 aaactgcacaaaccgaaccaatccaagctgcattggtttggtttggatgactttttaaaaatcaactgaatcaaaccaaactgcatgcttttttatctcg 21586926  T
Q  330 cggtttgaatgacttttatgctcaaaactgaacc 363  Q
    ||||||| |||||||||| ||||||||| |||||    
T  21586927 cggtttggatgacttttaagctcaaaaccgaacc 21586960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 35532038 - 35532113
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatg 212  Q
    |||||||||||| |||||| |||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||    
T  35532038 atattttatcatataaacatcaaaataaaatgtcttatgtttattttgtaataagttggcaatattagagttaatg 35532113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 27642049 - 27642125
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgt 213  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||  |||||||||| |||||||    
T  27642049 atattttatcatataaacagcaaaataaaatgtcctatgtctattttgtaacaagttgacaatattagagttaatgt 27642125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 50562462 - 50562622
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    |||||||||| | ||||||||||||||||||||| |||      ||||||||||||| ||||||||||| ||||||||||        ||||||||||||    
T  50562462 atattttatcgtataaacaacaaaataaaatgtcttat------tttgtaataagttggcaatattagagttaatgtaatatttttttatctcgcgataa 50562555  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    |||| |  ||| ||||||||| ||||   ||| ||||| |||| | || ||||||||||||||||||    
T  50562556 accgcacaaaccgaaccaatccaagccgaattggtttgattgggatgaatttttaaaaatcaaccga 50562622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 32880498 - 32880419
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    ||||||||| || |||||| |||||||||||||||||||| |||||| ||| |||||  |||||||||| ||||||||||    
T  32880498 atattttattatataaacagcaaaataaaatgtcctatgtttattttataacaagttgacaatattagagttaatgtaat 32880419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 33002719 - 33002643
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgt 213  Q
    |||||| ||||| |||||||||||||||||| |||| ||| |||||||||| |||||  |||||||||| |||||||    
T  33002719 atatttgatcatataaacaacaaaataaaatatcctgtgtttattttgtaacaagttgacaatattagagttaatgt 33002643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 34794703 - 34794625
Alignment:
Q  225 atctcgcgataaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    |||||||||| ||||| |||||||||||||||| || |  |||| |||||||| | | |||||||||||||||||||||    
T  34794703 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatgactttttaaaaatcaaccga 34794625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 39098140 - 39098084
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagtt 193  Q
    ||||||||| || ||||||||||||||||||||| ||||| |||||||||| |||||    
T  39098140 atattttattatataaacaacaaaataaaatgtcatatgtttattttgtaacaagtt 39098084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 43030629 - 43030548
Alignment:
Q  137 atattttatcatgtaaacaacaaaat--aaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||||||||||  |||||||| ||||| |||||||||| || || ||||||||  | ||||||||||    
T  43030629 atattttatcatataaacaacaaaataaaaaatgtcttatgtttattttgtaacaaattggcaatattgtagttaatgtaat 43030548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 51149631 - 51149709
Alignment:
Q  225 atctcgcgataaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    |||||||||| ||||| |||||||||||||||| || |  |||| |||||||| | |  ||||||||||||||||||||    
T  51149631 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatcactttttaaaaatcaaccga 51149709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 42789379 - 42789713
Alignment:
Q  19 tatgttatgctagtttatgacacaggtaatacatgactatattaaagcagaacaatacattgttggtattgaaaataaaagtttaggatctatgcaattc 118  Q
    |||||| ||| | ||||| ||||| |||||||||||||||| ||| |||  |||| | |||||||| ||||||||||||||| || |||||| |||||||    
T  42789379 tatgttctgccaatttataacacatgtaatacatgactatactaaggcaacacaa-atattgttgg-attgaaaataaaagtataagatctacgcaattc 42789476  T
Q  119 atgtataattgtatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgn 218  Q
    |||||||||||||| |||||||||||||||| |||||  |||||||||| || ||||| |||||||||| ||||  ||||||||||| || |||||||      
T  42789477 atgtataattgtatggtcatattttatcatgcaaacattaaaataaaatatcgtatgtttattttgtaacaagtcggcaatattagagttgatgtaat-t 42789575  T
Q  219 nnnnnnatctcgcgataaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccgagtcaaaccgcatgnn 318  Q
          ||||||||||||||   |||||| ||||| ||| ||||  ||||  ||||||| | | |||||||||||||||||| ||  ||||| |||||      
T  42789576 ttttttatctcgcgataaacaacatcaaccgaaccgatccaagccgcattgatttggtttggatgactttttaaaaatcaactgaaccaaactgcatgct 42789675  T
Q  319 nnnnnatctcgcggtttgaatgacttttatgctcaaaa 356  Q
         |||||||||||||||||||||||||||| ||||    
T  42789676 tttttatctcgcggtttgaatgacttttatgcttaaaa 42789713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 137 - 301
Target Start/End: Original strand, 1161629 - 1161792
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    |||||||||||| |||||| |||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||||        ||||| ||||||    
T  1161629 atattttatcatataaacagcaaaataaaatgtcatatgtttattttgtaataagttggcaatattagagttaatgtaat-attttttatctcacgataa 1161727  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaacc 301  Q
    |||| |  ||| ||||||||| ||||| |||| |||||||| | | |||||||||||||||||||    
T  1161728 accgcacaaaccgaaccaatcgaagctgcattggtttggtttggatgactttttaaaaatcaacc 1161792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 137 - 301
Target Start/End: Original strand, 51252301 - 51252465
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||        |||||| |||||    
T  51252301 atattttatcatgaaaacaacaaaataaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatatctttttatctcgtgataa 51252400  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaacc 301  Q
    |||| |  ||| ||||||||  ||||  ||||  ||||||| | | |||||||||||||||||||    
T  51252401 accgcacaaaccgaaccaattcaagccgcattgatttggtttggatgactttttaaaaatcaacc 51252465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 33474643 - 33474478
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    |||||||||||| |||||| ||||||||||||| |||||| |||||||||| ||||| ||||||||||| ||||||||||        ||||||||||||    
T  33474643 atattttatcatataaacatcaaaataaaatgttctatgtttattttgtaacaagttggcaatattagagttaatgtaat-tttttttatctcgcgataa 33474545  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    |||| |  ||| ||||||||| || |  |||| |||||||| | | |||||||| ||||||||||||    
T  33474544 accgcacaaaccgaaccaatccaaaccgcattggtttggtttggatgacttttttaaaatcaaccga 33474478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 44918743 - 44918664
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| | ||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  44918743 atattttatcatatgaacaacaaaataaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaat 44918664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 29389236 - 29389155
Alignment:
Q  135 tcatattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||||| |||||| |||||||||||||||||||| |||||||||| || || |||||||||||| |||||||||    
T  29389236 tcatattttatcatataaacatcaaaataaaatgtcctatgtttattttgtaacaatttggcaatattagaactaatgtaat 29389155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 24910934 - 24911013
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| ||||||  ||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  24910934 atattttatcatataaacagtaaaataaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaat 24911013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 45691998 - 45691919
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||  |||||||||| ||||||||||    
T  45691998 atattttatcatataaacatcaaaataaaatgtcctatgtttattttgtaacaagttgccaatattagagttaatgtaat 45691919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 16529375 - 16529451
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgt 213  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||||||| |||||  |||||||||| |||||||    
T  16529375 atattttatcatataaacaacaaagtaaaatgtcctatgtttattttgtaacaagttgacaatattagagttaatgt 16529451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 32954249 - 32954171
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||| ||||||| ||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||| ||||||||||    
T  32954249 atatgttatcatataaacaacaaaataaaatgtcctatgttta-tttgtaacaagttggcaatattagagttaatgtaat 32954171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 33910657 - 33910736
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||| |||||| |||  ||||||||||    
T  33910657 atattttatcatttaaacagcaaaataaaatgtcctatgtttattttgtaacaagttggcaataatagggttaatgtaat 33910736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 39256530 - 39256596
Alignment:
Q  150 taaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||||||||||||||| || ||||| |||| ||||| ||||||||||| ||||||||||    
T  39256530 taaacaacaaaataaaatgtcctaagtttatttggtaacaagttggcaatattagagttaatgtaat 39256596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 44918593 - 44918520
Alignment:
Q  283 gactttttaaaaatcaaccgagtcaaaccgcatgnnnnnnnatctcgcggtttgaatgacttttatgctcaaaa 356  Q
    |||||||||||||||||||||  |||||||||||       |||| || |||||  ||||||||||||||||||    
T  44918593 gactttttaaaaatcaaccgaaccaaaccgcatgcttttttatcttgcagtttgggtgacttttatgctcaaaa 44918520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 356
Target Start/End: Original strand, 51252493 - 51252525
Alignment:
Q  324 atctcgcggtttgaatgacttttatgctcaaaa 356  Q
    ||||||||||||| |||||||||||||||||||    
T  51252493 atctcgcggtttggatgacttttatgctcaaaa 51252525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 54 - 216
Target Start/End: Complemental strand, 33068534 - 33068380
Alignment:
Q  54 actatattaaagcagaacaatacattgttggtattgaaaataaaagtttaggatctatgcaattcatgtataattgtatagtcatattttatcatgtaaa 153  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||        |||||||||||||||| ||    
T  33068534 actatattaaggcataacaatatattgttggtattgaaaataaaaatttaggatctatgcaattcatgtataa--------tcatattttatcatgttaa 33068443  T
Q  154 caacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    || |||||||||||||| ||| | ||| |||||||||||| ||||||||||| ||||||||||    
T  33068442 cagcaaaataaaatgtcatatttttatcttgtaataagttggcaatattagagttaatgtaat 33068380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 363
Target Start/End: Complemental strand, 10661350 - 10661119
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| | ||||||||||        ||||||||||||    
T  10661350 atattttatcatataaacaacaaaataaaatgtcctatgtttattttgtaacaagttggcaatattacagttaatgtaatatttttttatctcgcgataa 10661251  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccg-----agtcaaaccgcatgnnnnnnnatctcgcg 331  Q
    | || |  ||| ||||||||  || |  |||| |||||||| | | ||||||||||||||||||||     |  |||||||||||       ||||||||    
T  10661250 atcgcacaaaccgaaccaatacaaaccgcattggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttatctcgcg 10661151  T
Q  332 gtttgaatgacttttatgctcaaaactgaacc 363  Q
    ||||| |||||||||||||||||||| |||||    
T  10661150 gtttggatgacttttatgctcaaaaccgaacc 10661119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 14549429 - 14549350
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  14549429 atattttatcatataaacaacaaaataaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaat 14549350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 36827673 - 36827752
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||  ||||| ||||||||||| ||||||||||    
T  36827673 atattttatcatataaacaacaaaataaaatgtcctatgtttattttgtagcaagttggcaatattagagttaatgtaat 36827752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 30392282 - 30392203
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||||||||||||||||  |||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  30392282 atattttatcatataaacaacaaaataaaatgctctatgtttattttgtaacaagttggcaatattagagttaatgtaat 30392203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 6200728 - 6200807
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| ||||||||||||  ||||||||||||| ||||||| || ||||| ||||||||||| ||||||||||    
T  6200728 atattttatcatataaacaacaaaacgaaatgtcctatgtttattttgaaacaagttggcaatattagagttaatgtaat 6200807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 3682121 - 3682042
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| |||||| ||||||||||||| |||||| |||||||||| |||||  |||||||| | ||||||||||    
T  3682121 atattttatcatataaacagcaaaataaaatgttctatgtttattttgtaacaagttgacaatattaaagttaatgtaat 3682042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 18169905 - 18169983
Alignment:
Q  138 tattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    ||||||||||| |||| | ||| |||||||||| ||||| |||||||||| ||||  |||| |||||| ||||||||||    
T  18169905 tattttatcatataaatagcaatataaaatgtcttatgtttattttgtaacaagtaggcaacattagagttaatgtaat 18169983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 18633471 - 18633549
Alignment:
Q  138 tattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    ||||||||||| |||| | ||| |||||||||| ||||| |||||||||| ||||  |||| |||||| ||||||||||    
T  18633471 tattttatcatataaatagcaatataaaatgtcttatgtttattttgtaacaagtaggcaacattagagttaatgtaat 18633549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 324 - 363
Target Start/End: Complemental strand, 30392143 - 30392104
Alignment:
Q  324 atctcgcggtttgaatgacttttatgctcaaaactgaacc 363  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  30392143 atctcgcggtttggatgacttttatgctcaaaaccgaacc 30392104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 36910252 - 36910296
Alignment:
Q  172 tatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    ||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  36910252 tatgtctattttgtaacaagttggcaatattagagttaatgtaat 36910296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 137 - 277
Target Start/End: Original strand, 69416 - 69556
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||| ||||        ||||||||||||    
T  69416 atattttatcatgaaaacaacaaaataaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatataatatttttttatctcgcgataa 69515  T
Q  237 accggatcaactgaaccaatcaaagctacattagtttggtt 277  Q
    |||| || ||| ||||||||| |||| |||||  |||||||    
T  69516 accgcataaaccgaaccaatccaagccacattgatttggtt 69556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 356
Target Start/End: Original strand, 69618 - 69650
Alignment:
Q  324 atctcgcggtttgaatgacttttatgctcaaaa 356  Q
    ||||||||||||| |||||||||||||||||||    
T  69618 atctcgcggtttggatgacttttatgctcaaaa 69650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 262
Target Start/End: Complemental strand, 128843 - 128718
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataa 236  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||| ||||||||||| ||||||||||        ||||||||||||    
T  128843 atattttatcatgaaaacaacaaaataaaatgtcctatgtttattttgttacaagttggcaatattagagttaatgtaatatttttttatctcgcgataa 128744  T
Q  237 accggatcaactgaaccaatcaaagc 262  Q
    |||| |  ||| ||||||||| ||||    
T  128743 accgcacaaaccgaaccaatccaagc 128718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 106236 - 106157
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    ||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  106236 atattttattatgtaaacaacaaaataaaatttcctatgtttattttgtaacaagttggcaatattagagttaatgtaat 106157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 10390907 - 10390986
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  10390907 atattttatcatataaacaacaaaataaaatgtcttatgtttattttgtaacaagttggcaatattagagttaatgtaat 10390986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 15859930 - 15859851
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||| ||| ||||||||||||||||||||||||||| |||||| ||| ||||| ||||||||||| ||||||||||    
T  15859930 atattttagcatataaacaacaaaataaaatgtcctatgtttattttctaacaagttggcaatattagagttaatgtaat 15859851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 363
Target Start/End: Original strand, 35040114 - 35040327
Alignment:
Q  149 gtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaatgnnnnnnnatctcgcgataaaccggatcaact 248  Q
    |||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| | ||||||||        |||||||||||||||| |  |||     
T  35040114 gtaaacaacaaaataaaatgccctatgtttattttgtaataagttggcaatattagagtcaatgtaat-attttttatctcgcgataaaccgcacaaacc 35040212  T
Q  249 gaaccaatcaaagctacattagtttggttggaaagactttttaaaaatc-----aaccgagtcaaaccgcatgnnnnnnnatctcgcggtttgaatgact 343  Q
    ||||||||| || |  |||| ||||||     | |||||||||||||||     |||| |  |||||||||||       ||||||||||||| ||||||    
T  35040213 gaaccaatccaaaccgcattggtttgg-----atgactttttaaaaatcaaccaaaccaaaccaaaccgcatgcttttttatctcgcggtttggatgact 35040307  T
Q  344 tttatgctcaaaactgaacc 363  Q
    |||||||||||||| |||||    
T  35040308 tttatgctcaaaaccgaacc 35040327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 5287780 - 5287868
Alignment:
Q  128 tgtatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    ||||||||| ||||||||||| ||||||  ||||||||||| | ||||| |||||||| ||||||| ||||||||||| ||||||||||    
T  5287780 tgtatagtcgtattttatcatataaacagaaaaataaaatgacatatgtttattttgttataagttggcaatattagagttaatgtaat 5287868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 25136973 - 25136897
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgt 213  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||  |||||||||| |||||||    
T  25136973 atattttatcatataaacaacaaaataaaatgtcctatgtttgttttgtaacaagttgacaatattagagttaatgt 25136897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 363
Target Start/End: Complemental strand, 10591051 - 10590816
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgta-ataagttagcaatattagaattaatgtaa---tgnnnnnnnatctcgcg 232  Q
    ||||||||| |  ||||||  ||||||||||||| ||||| ||||||||| ||||||| ||||||||||| |||||||||   |        |||||| |    
T  10591051 atattttattaaataaacagtaaaataaaatgtcatatgtttattttgtatataagttggcaatattagagttaatgtaatattttttttttatctcgtg 10590952  T
Q  233 ataaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccg-----agtcaaaccgcatgnnnnnnnatct 327  Q
    |||||||| |  ||| ||||||||| ||||  |||| |||||||||| | ||||||||||||||||||||     |  |||||||||||       ||||    
T  10590951 ataaaccgcacaaaccgaaccaatccaagccgcattggtttggttgggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttatct 10590852  T
Q  328 cgcggtttgaatgacttttatgctcaaaactgaacc 363  Q
    ||| ||||| |||||||||||||||||||| |||||    
T  10590851 cgcagtttggatgacttttatgctcaaaaccgaacc 10590816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 33550521 - 33550446
Alignment:
Q  141 tttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||| ||||| ||||| ||||||||||    
T  33550521 tttatcatataaacaacaaaataacatgtcctatgtttattttgtaacaagttggcaattttagagttaatgtaat 33550446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 10494260 - 10494334
Alignment:
Q  141 tttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaa 215  Q
    ||||||| ||||||||| ||||||||| |||||||| |||||||||||||||| ||||||||| | |||||||||    
T  10494260 tttatcacgtaaacaactaaataaaatttcctatgtttattttgtaataagttggcaatattatagttaatgtaa 10494334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 13801858 - 13801937
Alignment:
Q  137 atattttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||| ||||||| |||||| ||||||||||||| |||||| |||||||||| || || ||||||||||| ||||||||||    
T  13801858 atatgttatcatataaacatcaaaataaaatgttctatgtttattttgtaacaaattggcaatattagagttaatgtaat 13801937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 12270665 - 12270587
Alignment:
Q  225 atctcgcgataaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    |||||||||| ||||| |||||||||||||||| || |  |||| |||||||| | | |||||||||||||||||||||    
T  12270665 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatgactttttaaaaatcaaccga 12270587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 324 - 363
Target Start/End: Original strand, 10391100 - 10391139
Alignment:
Q  324 atctcgcggtttgaatgacttttatgctcaaaactgaacc 363  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  10391100 atctcgcggttcgaatgacttttatgctcaaaaccgaacc 10391139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 10494459 - 10494492
Alignment:
Q  324 atctcgcggtttgaatgacttttatgctcaaaac 357  Q
    ||||||||||||| ||||||||||||||||||||    
T  10494459 atctcgcggtttggatgacttttatgctcaaaac 10494492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 5857 - 5935
Alignment:
Q  225 atctcgcgataaaccggatcaactgaaccaatcaaagctacattagtttggttggaaagactttttaaaaatcaaccga 303  Q
    |||||||||| ||||| |||||||||||||||| || |  |||| |||||||| | | |||||||||||||||||||||    
T  5857 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatgactttttaaaaatcaaccga 5935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 40459 - 40535
Alignment:
Q  140 ttttatcatgtaaacaacaaaataaaatgtcctatgtgtattttgtaataagttagcaatattagaattaatgtaat 216  Q
    |||||| || ||||||||||||||||| ||| ||||| |||||||||| ||||| | ||||||||| | ||||||||    
T  40459 ttttatgatataaacaacaaaataaaacgtcttatgtttattttgtaacaagttggtaatattagagtcaatgtaat 40535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University