View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8941_low_35 (Length: 340)

Name: NF8941_low_35
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8941_low_35
NF8941_low_35
[»] chr5 (4 HSPs)
chr5 (1-65)||(14674227-14674291)
chr5 (2-40)||(30183532-30183570)
chr5 (1-43)||(41995451-41995493)
chr5 (1-37)||(39698527-39698563)
[»] chr1 (7 HSPs)
chr1 (2-62)||(18556494-18556554)
chr1 (1-56)||(46348420-46348475)
chr1 (1-43)||(29144395-29144437)
chr1 (1-54)||(37598800-37598854)
chr1 (1-42)||(42359486-42359527)
chr1 (1-37)||(22881653-22881689)
chr1 (1-37)||(24577223-24577259)
[»] chr8 (2 HSPs)
chr8 (1-56)||(36450791-36450846)
chr8 (1-37)||(15816166-15816202)
[»] chr4 (7 HSPs)
chr4 (1-40)||(34306840-34306879)
chr4 (2-43)||(19482648-19482689)
chr4 (256-324)||(10419821-10419889)
chr4 (1-56)||(30298913-30298968)
chr4 (1-56)||(30327781-30327836)
chr4 (1-56)||(24543947-24544003)
chr4 (1-59)||(54580060-54580117)
[»] chr6 (5 HSPs)
chr6 (1-43)||(16833288-16833330)
chr6 (1-49)||(17302530-17302578)
chr6 (1-56)||(17841626-17841681)
chr6 (1-43)||(8777010-8777052)
chr6 (2-43)||(8365557-8365598)
[»] chr3 (10 HSPs)
chr3 (1-43)||(55401055-55401097)
chr3 (2-43)||(33359741-33359782)
chr3 (1-56)||(20503433-20503487)
chr3 (1-56)||(40052300-40052354)
chr3 (1-43)||(10335323-10335365)
chr3 (1-43)||(14829670-14829712)
chr3 (1-43)||(16000053-16000095)
chr3 (2-43)||(41961688-41961729)
chr3 (1-45)||(3865593-3865637)
chr3 (1-56)||(34910284-34910339)
[»] chr2 (3 HSPs)
chr2 (1-37)||(18841050-18841086)
chr2 (1-56)||(37558944-37558999)
chr2 (1-43)||(12940972-12941014)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-43)||(178856-178898)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-50)||(51784-51833)


Alignment Details
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14674291 - 14674227
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtctgtatccgtgctttatggcata 65  Q
    |||||||||||||||| |||||| |||| |||||||| |||||||||||||||||| || |||||    
T  14674291 tttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtctgtatccgtgcttcatagcata 14674227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 30183570 - 30183532
Alignment:
Q  2 ttttcaaattattagttgtgtcagcgtatcagtgtctgt 40  Q
    |||||||||||||||||||||| || |||||||||||||    
T  30183570 ttttcaaattattagttgtgtcggcatatcagtgtctgt 30183532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 41995493 - 41995451
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtc 43  Q
    |||||| |||||||||||||||| |||| ||||||||||||||    
T  41995493 tttttcgaattattagttgtgtcggcgtgtcagtgtctgtgtc 41995451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39698563 - 39698527
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtc 37  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  39698563 tttttcaaattattagctgtgtcagcgtgtcagtgtc 39698527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 18556494 - 18556554
Alignment:
Q  2 ttttcaaattattagttgtgtcagcgtatcagtgtctgtgtctgtatccgtgctttatggc 62  Q
    ||||||||||||||| |||||| |||| |||||||| ||||| ||||||||||||||||||    
T  18556494 ttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgctttatggc 18556554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 46348420 - 46348475
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtctgtatccgtgctt 56  Q
    |||||||||||||||| |||||| |||| |||||||| ||||| ||||||||||||    
T  46348420 tttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgctt 46348475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29144395 - 29144437
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtc 43  Q
    |||||||||||||||| |||||| ||||||||||||| |||||    
T  29144395 tttttcaaattattagctgtgtcggcgtatcagtgtcagtgtc 29144437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 37598854 - 37598800
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgt-ctgtgtctgtatccgtgc 54  Q
    ||||||||||||||||||||||| |||| ||||||| | |||||||| |||||||    
T  37598854 tttttcaaattattagttgtgtcggcgtgtcagtgtccggtgtctgtgtccgtgc 37598800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42359486 - 42359527
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgt 42  Q
    |||||||||||||||| ||||||||||| |||||||| ||||    
T  42359486 tttttcaaattattagatgtgtcagcgtgtcagtgtccgtgt 42359527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22881653 - 22881689
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtc 37  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  22881653 tttttcaaattattagttgtgtcggcgtgtcagtgtc 22881689  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24577223 - 24577259
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtc 37  Q
    |||||||||||||||||||||||||||| || |||||    
T  24577223 tttttcaaattattagttgtgtcagcgtgtccgtgtc 24577259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 36450791 - 36450846
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtctgtatccgtgctt 56  Q
    ||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||    
T  36450791 tttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtccgtatccgtgctt 36450846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15816166 - 15816202
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtc 37  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  15816166 tttttcaaattattagttgtgtcggcgtgtcagtgtc 15816202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34306840 - 34306879
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgt 40  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  34306840 tttttcaaattattagttgtgtcggcgtatcagtgtctgt 34306879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 19482689 - 19482648
Alignment:
Q  2 ttttcaaattattagttgtgtcagcgtatcagtgtctgtgtc 43  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  19482689 ttttcaaattattagttgtgtcggcgtgtcagtgtctgtgtc 19482648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 10419821 - 10419889
Alignment:
Q  256 gttgtacaaataaaggacactgtctaaattttgctagagatattttagcgtagcattttgaactatttt 324  Q
    |||||| ||| ||||||||||||  |||||||| |||| ||| |||| | |||||||||||||||||||    
T  10419821 gttgtataaacaaaggacactgtaaaaattttgatagaaatagtttaacttagcattttgaactatttt 10419889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 30298968 - 30298913
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtctgtatccgtgctt 56  Q
    |||||||||||||||| |||||| |||| |||||||| ||||| ||||| ||||||    
T  30298968 tttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgctt 30298913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 30327836 - 30327781
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtctgtatccgtgctt 56  Q
    |||||||||||||||| |||||| |||| |||||||| ||||| ||||| ||||||    
T  30327836 tttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgctt 30327781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24544003 - 24543947
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtct-gtgtctgtatccgtgctt 56  Q
    ||||| ||||||||||||||||| |||| ||||||||| ||||| |||||| |||||    
T  24544003 ttttttaaattattagttgtgtcggcgtgtcagtgtctggtgtccgtatccatgctt 24543947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 54580060 - 54580117
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgt-ctgtgtctgtatccgtgctttat 59  Q
    |||||||||||||||||||||||||||  || |||| | ||||||||||||||| |||||    
T  54580060 tttttcaaattattagttgtgtcagcg--tccgtgtccggtgtctgtatccgtgttttat 54580117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16833330 - 16833288
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtc 43  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  16833330 tttttcaaattattagttgtgtcggcgtgtcagtgtctgtgtc 16833288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17302578 - 17302530
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtctgtatc 49  Q
    |||||||||||||||||||||||||||| |||||||  ||||| |||||    
T  17302578 tttttcaaattattagttgtgtcagcgtgtcagtgttcgtgtccgtatc 17302530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 17841626 - 17841681
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtctgtatccgtgctt 56  Q
    |||||||||||||||| |||||| |||| |||||||| ||||| ||||| ||||||    
T  17841626 tttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatcagtgctt 17841681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 8777010 - 8777052
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtc 43  Q
    ||||||||||||||||||||||| |||| |||||||| |||||    
T  8777010 tttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 8777052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 8365557 - 8365598
Alignment:
Q  2 ttttcaaattattagttgtgtcagcgtatcagtgtctgtgtc 43  Q
    |||||||||||||||||||||| |||| |||||||| |||||    
T  8365557 ttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 8365598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 55401097 - 55401055
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtc 43  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  55401097 tttttcaaattattagttgtgtcggcgtatcagtgtccgtgtc 55401055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 33359782 - 33359741
Alignment:
Q  2 ttttcaaattattagttgtgtcagcgtatcagtgtctgtgtc 43  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  33359782 ttttcaaattattagctgtgtcagcgtgtcagtgtctgtgtc 33359741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 20503487 - 20503433
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtctgtatccgtgctt 56  Q
    |||||||||||||| |||||||| |||| |||||||| ||||| ||||||||||||    
T  20503487 tttttcaaattatttgttgtgtcggcgtgtcagtgtc-gtgtccgtatccgtgctt 20503433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 40052354 - 40052300
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtctgtatccgtgctt 56  Q
    |||||||||||||||| |||||| |||| |||||||| ||||| ||||||||||||    
T  40052354 tttttcaaattattagctgtgtcggcgtgtcagtgtc-gtgtccgtatccgtgctt 40052300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 10335323 - 10335365
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtc 43  Q
    ||||||||||||||||||||||| |||| |||||||| |||||    
T  10335323 tttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 10335365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 14829712 - 14829670
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtc 43  Q
    |||||||||||||||| |||||| |||| ||||||||||||||    
T  14829712 tttttcaaattattagctgtgtcggcgtgtcagtgtctgtgtc 14829670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16000053 - 16000095
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtc 43  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||    
T  16000053 ttttttaaattattagttgtgtcggcgtgtcagtgtctgtgtc 16000095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 41961688 - 41961729
Alignment:
Q  2 ttttcaaattattagttgtgtcagcgtatcagtgtctgtgtc 43  Q
    |||||||||||||||||||| | |||| ||||||||||||||    
T  41961688 ttttcaaattattagttgtgacggcgtgtcagtgtctgtgtc 41961729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3865593 - 3865637
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtctg 45  Q
    |||||||||||||||| |||||| |||| |||||||| |||||||    
T  3865593 tttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtctg 3865637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34910339 - 34910284
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtct-gtgtctgtatccgtgctt 56  Q
    ||||||||||||||||||||||| |||| || |||||| ||||| ||||||||||||    
T  34910339 tttttcaaattattagttgtgtcggcgtgtc-gtgtctggtgtccgtatccgtgctt 34910284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18841050 - 18841086
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtc 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  18841050 tttttcaaattattagttgtgtcagcgtgtcagtgtc 18841086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 37558999 - 37558944
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtctgtatccgtgctt 56  Q
    |||| ||||||||||| |||||| |||| |||||||| ||||| ||||||||||||    
T  37558999 ttttacaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgctt 37558944  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12940972 - 12941014
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtc 43  Q
    |||||||||||||||||||||||| ||| |||||||| |||||    
T  12940972 tttttcaaattattagttgtgtcaacgtgtcagtgtccgtgtc 12941014  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 178856 - 178898
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtc 43  Q
    ||||||||||||||||||||||| |||| |||||||| |||||    
T  178856 tttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 178898  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 51833 - 51784
Alignment:
Q  1 tttttcaaattattagttgtgtcagcgtatcagtgtctgtgtctgtatcc 50  Q
    |||||||||||||||| |||||| |||| |||||||| ||||| ||||||    
T  51833 tttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatcc 51784  T

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