View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8941_low_38 (Length: 292)
Name: NF8941_low_38
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_low_38 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 2 - 279
Target Start/End: Original strand, 37575734 - 37576011
Alignment:
| Q |
2 |
cgagtttggtgttgtcgcatttgttgtgcatgtgggaaaggtttatacgtcaagtcagcaaaagaagcaatgggtttttgtgactgatggatccatcatg |
101 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37575734 |
cgagttcgatgttgtcgcatttgttgtgcatgtgggaaaggtttatacgtcaagtcagcaaaagaagcaatgggtttttgtgactgatggatccatcatg |
37575833 |
T |
|
| Q |
102 |
aatggtttacagtcacaacagtttactgacacattgcttgccatttgcttttgctccccgttgtttgatcatgattcatttccaccgatcaaccataacc |
201 |
Q |
| |
|
|||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37575834 |
aatggtttacagtcacaaaaggttaccgacacattgcttgccatttgcttttgctccccattgtttgatcatgattcatttccaccgatcaaccataacc |
37575933 |
T |
|
| Q |
202 |
ttgccggatctacggtaattacattgttctatgctttttgttactgctattcttaactatccgttatactttttgttg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37575934 |
ttgccggatctacggtaattacattgttctatgctttttgttactgctattcttaactatccgttatactttttgttg |
37576011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 37576009 - 37576053
Alignment:
| Q |
135 |
ttgcttgccatttgcttttgctccccgttgtttgatcatgattca |
179 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
37576009 |
ttgcttgccatttgcttttgctccctattgattgatcatgattca |
37576053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 10438773 - 10439001
Alignment:
| Q |
18 |
gcatttgttgtgcatgtgggaaaggtttatacgtcaagtcagcaaaagaagcaatgggtttttgtgactgatggatccatcatgaatggtttacagtcac |
117 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| |
|
|
| T |
10438773 |
gcatttgttgtgcatgtcggaaaggcttatacatcaggtcagcaaaagaagcaatgggtttttgtgactgatggatcgatcatgaaaggtttacaatcag |
10438872 |
T |
|
| Q |
118 |
aacagtttactgacacattgcttgccatttgcttttgctccccgttgtttgatcatgattcatttccaccgatcaaccataaccttgccggatctacggt |
217 |
Q |
| |
|
| ||||||| |||||||||||||| |||| |||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
10438873 |
agaagtttacggacacattgcttgctattttcttttgctccccattgattgatcatgattcatttccaccaatcaaccataaccttgctggatctacggt |
10438972 |
T |
|
| Q |
218 |
aattacattgttctatgctttttgttact |
246 |
Q |
| |
|
|||||||||||||||| | |||||||||| |
|
|
| T |
10438973 |
aattacattgttctataccttttgttact |
10439001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University