View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8941_low_40 (Length: 284)

Name: NF8941_low_40
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8941_low_40
NF8941_low_40
[»] chr1 (26 HSPs)
chr1 (18-278)||(8932015-8932275)
chr1 (18-278)||(8955937-8956197)
chr1 (18-271)||(8920610-8920863)
chr1 (18-278)||(8941931-8942191)
chr1 (18-278)||(9318226-9318486)
chr1 (69-278)||(9453760-9453969)
chr1 (46-278)||(9432773-9433005)
chr1 (46-278)||(9399574-9399806)
chr1 (18-278)||(9254964-9255224)
chr1 (36-246)||(9319834-9320044)
chr1 (36-246)||(9350151-9350361)
chr1 (46-278)||(9486125-9486357)
chr1 (121-232)||(9104973-9105084)
chr1 (121-232)||(9096791-9096902)
chr1 (118-247)||(9384239-9384368)
chr1 (118-251)||(9488564-9488697)
chr1 (121-248)||(8964529-8964656)
chr1 (121-248)||(8999680-8999807)
chr1 (130-248)||(8874034-8874152)
chr1 (121-253)||(9142832-9142964)
chr1 (113-248)||(9056570-9056705)
chr1 (118-247)||(9234026-9234155)
chr1 (121-230)||(10974263-10974372)
chr1 (49-232)||(9082521-9082704)
chr1 (121-232)||(9152406-9152517)
chr1 (118-227)||(9463970-9464078)
[»] chr3 (1 HSPs)
chr3 (26-278)||(9159514-9159766)
[»] chr6 (1 HSPs)
chr6 (18-278)||(15927132-15927392)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 8932015 - 8932275
Alignment:
Q  18 tatctccctttcttaaatcaattcattgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgct 117  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8932015 tatctccctttcttccatcaattcattgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgct 8932114  T
Q  118 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8932115 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 8932214  T
Q  218 ctcttgcagcagtcaaagttacaatgctattgtcaactggataaagttttgcaacaccaaa 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8932215 ctcttgcagcagtcaaagttacaatgctattgtcaactggataaagttttgcaagaccaaa 8932275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 8955937 - 8956197
Alignment:
Q  18 tatctccctttcttaaatcaattcattgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgct 117  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8955937 tatctctctttcttcaatcaattcattgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgct 8956036  T
Q  118 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||    
T  8956037 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaataattccggagccatgtaaccaattgttc 8956136  T
Q  218 ctcttgcagcagtcaaagttacaatgctattgtcaactggataaagttttgcaacaccaaa 278  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  8956137 ctcttgcagccgtcaaagttacaatgctattgtcaacaggataaagttttgcaagaccaaa 8956197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 8920610 - 8920863
Alignment:
Q  18 tatctccctttcttaaatcaattcattgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgct 117  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||    
T  8920610 tatctccctttcttcaatcaattcattgtagatccaatagggaaagaaaatttggtctgaatcatttgcatttgagttcaaatttcttctcctgtttgct 8920709  T
Q  118 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 217  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8920710 atttccatcaagagcattccaaagctatatacatcggccttataggagactttaccaatatttttgtagaacaactctggtgccatgtaaccaattgttc 8920809  T
Q  218 ctcttgcagcagtcaaagttacaatgctattgtcaactggataaagttttgcaa 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8920810 ctcttgcagcagtcaaagttacaatgctattgtcaactggataaagttttgcaa 8920863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 8941931 - 8942191
Alignment:
Q  18 tatctccctttcttaaatcaattcattgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgct 117  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8941931 tatctccctttcttcaaccaattcattgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagtttaaatttcttctcctgtttgct 8942030  T
Q  118 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 217  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8942031 atttccattaagagcattccaaagctatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgtac 8942130  T
Q  218 ctcttgcagcagtcaaagttacaatgctattgtcaactggataaagttttgcaacaccaaa 278  Q
    |||| ||||| |||| ||||||||||||||| ||||  |||||||||||||||| ||||||    
T  8942131 ctctagcagcggtcatagttacaatgctattttcaataggataaagttttgcaagaccaaa 8942191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 9318486 - 9318226
Alignment:
Q  18 tatctccctttcttaaatcaattcattgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgct 117  Q
    ||||||| | |||| |||||||| ||| |||||||||  ||||||||||||||| ||||||  ||| |||| ||  || ||||||||| || |  ||||     
T  9318486 tatctccttgtcttcaatcaattgattataaatccaaatgggaaagaaaatttgacttgaacgatcggcatgtggatttaaatttcttttcttacttgcc 9318387  T
Q  118 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 217  Q
    |||||||| || ||||||||||||||||| ||||||||||| ||||| |||   ||||||||||||||||||||||| || |||||||| ||||||||||    
T  9318386 atttccatcaaaagcattccaaagctatatacatcggccttgtaggatactcctccaatatttttgtagaacaattcaggagccatgtatccaattgttc 9318287  T
Q  218 ctcttgcagcagtcaaagttacaatgctattgtcaactggataaagttttgcaacaccaaa 278  Q
    |||| || ||||| ||||| ||||||||| |||||  ||||||||| ||||| | ||||||    
T  9318286 ctctagctgcagttaaagtgacaatgctaatgtcatttggataaagctttgccagaccaaa 9318226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 69 - 278
Target Start/End: Complemental strand, 9453969 - 9453760
Alignment:
Q  69 ttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgctatttccattaagagcattccaaagctatacacatcggccttataggaaact 168  Q
    |||||||||||  || |||| ||| ||||||||||| |||||  |||| ||||| || |  ||||||||||| ||||||||||||||||| |  || | |    
T  9453969 ttggcttgaatgctcagcatgtgaattcaaatttctactcctacttgcaatttcaatcagaagcattccaaaactatacacatcggccttgtgtgatatt 9453870  T
Q  169 ttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctcttgcagcagtcaaagttacaatgctattgtcaactggataaagttttg 268  Q
     | |||||||||| |||||||||||| || |||||||||||||||||||||||||| || |||||||  ||||||||||||||||  |||||||| ||||    
T  9453869 ctcccaatattttggtagaacaattcaggagccatgtaaccaattgttcctcttgctgctgtcaaagcgacaatgctattgtcaataggataaagctttg 9453770  T
Q  269 caacaccaaa 278  Q
    ||| ||||||    
T  9453769 caagaccaaa 9453760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 46 - 278
Target Start/End: Complemental strand, 9433005 - 9432773
Alignment:
Q  46 taaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgctatttccattaagagcattccaaagctat 145  Q
    ||||||||| |||| ||  ||| ||| |||||||  || |||| ||| |||||||||||||| ||  |||| ||||| || || ||||||||||| ||||    
T  9433005 taaatccaaaaggggaaataaagttgacttgaatgctcagcatgtgaattcaaatttcttcttctacttgcgatttcaatcaaaagcattccaaaactat 9432906  T
Q  146 acacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctcttgcagcagtcaaagttacaatgct 245  Q
    ||||||||||||| |  || | | | |||||||||| |||||||||||| || |||||||||||||||||||||||||| || ||||||||  |||||||    
T  9432905 acacatcggccttgtgtgatattctcccaatattttggtagaacaattcaggagccatgtaaccaattgttcctcttgctgccgtcaaagtggcaatgct 9432806  T
Q  246 attgtcaactggataaagttttgcaacaccaaa 278  Q
     |||||||  |||||||| ||||||| ||||||    
T  9432805 tttgtcaataggataaagctttgcaagaccaaa 9432773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 278
Target Start/End: Original strand, 9399574 - 9399806
Alignment:
Q  46 taaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgctatttccattaagagcattccaaagctat 145  Q
    ||||||||| |||| ||  ||| ||| |||||||  || |||| ||| |||||||||||||||||  |||| ||||| || || ||||| ||||||||||    
T  9399574 taaatccaaaaggggaaataaagttgacttgaatgctcagcatgtgaattcaaatttcttctcctacttgcaatttcaatcaaaagcataccaaagctat 9399673  T
Q  146 acacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctcttgcagcagtcaaagttacaatgct 245  Q
    ||||||| |||||||| || | |   |||||||||| | |||||| ||| || |||||||||||||||||||||||||| ||  |||||||  |||||||    
T  9399674 acacatcagccttatatgatattcccccaatattttggaagaacagttcaggagccatgtaaccaattgttcctcttgctgccatcaaagtggcaatgct 9399773  T
Q  246 attgtcaactggataaagttttgcaacaccaaa 278  Q
     |||||||  |||||||| ||||||| ||||||    
T  9399774 tttgtcaataggataaagctttgcaagaccaaa 9399806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 9255224 - 9254964
Alignment:
Q  18 tatctccctttcttaaatcaattcattgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgct 117  Q
    ||||||| |||||| |||||||| ||  |||||||||  ||||||||||||||| ||||||  ||| |||| ||  || ||||||||| || |  ||||     
T  9255224 tatctccttttcttcaatcaattgatcataaatccaaatgggaaagaaaatttgacttgaacgatcggcatgtggatttaaatttcttttcttacttgcc 9255125  T
Q  118 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 217  Q
    ||||| || || ||||||||||||||||| ||||||||||| || || |||   |||||||||| |||||||||||| || |||||||| |||||||| |    
T  9255124 atttcaatcaaaagcattccaaagctatatacatcggccttgtacgatactcctccaatattttggtagaacaattcaggagccatgtatccaattgtcc 9255025  T
Q  218 ctcttgcagcagtcaaagttacaatgctattgtcaactggataaagttttgcaacaccaaa 278  Q
    | ||||| || || ||||| ||||| ||| | |||  ||||||||| | ||||| ||||||    
T  9255024 cccttgctgcggttaaagtgacaatactaatctcatttggataaagctgtgcaagaccaaa 9254964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 36 - 246
Target Start/End: Original strand, 9319834 - 9320044
Alignment:
Q  36 caattcattgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgctatttccattaagagcatt 135  Q
    ||||| ||| |||||||||  ||||||||||||||| ||||||   || |||| ||  || || |||||| || |  |||| |||||||| || ||||||    
T  9319834 caattgattataaatccaaatgggaaagaaaatttgacttgaacgttcggcatgtggatttaagtttcttttcttacttgccatttccatcaaaagcatt 9319933  T
Q  136 ccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctcttgcagcagtcaaag 235  Q
    || |||||||| ||||| ||||| ||||| |||   ||||||||||||||||||||||| || ||||| || ||||||||||||||||| ||||| ||||    
T  9319934 ccgaagctatatacatcagccttgtaggatactcctccaatatttttgtagaacaattcaggagccatatatccaattgttcctcttgctgcagttaaag 9320033  T
Q  236 ttacaatgcta 246  Q
    | |||||||||    
T  9320034 tgacaatgcta 9320044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 36 - 246
Target Start/End: Original strand, 9350151 - 9350361
Alignment:
Q  36 caattcattgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgctatttccattaagagcatt 135  Q
    ||||| ||| |||||||||  ||||||||||||||| ||||||   || |||| ||  || ||||||||| || |  |||| |||||||| || ||||||    
T  9350151 caattgattataaatccaaatgggaaagaaaatttgacttgaacgttcggcatgtggatttaaatttcttttcttacttgcgatttccatcaaaagcatt 9350250  T
Q  136 ccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctcttgcagcagtcaaag 235  Q
    || |||||||| ||||| ||||| ||||| |||   |||||||||||||||||||| || || ||||| || ||||||||||||||||| ||||| ||||    
T  9350251 ccgaagctatatacatcagccttgtaggatactcctccaatatttttgtagaacaactcaggagccatatatccaattgttcctcttgctgcagttaaag 9350350  T
Q  236 ttacaatgcta 246  Q
    | |||||||||    
T  9350351 tgacaatgcta 9350361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 278
Target Start/End: Complemental strand, 9486357 - 9486125
Alignment:
Q  46 taaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgctatttccattaagagcattccaaagctat 145  Q
    ||||||||| |||||||| ||| ||| |||||||  || |||| ||  |||||||||||||| ||  |||| ||||| || || ||||||||||||||||    
T  9486357 taaatccaaaagggaaagtaaagttgacttgaatgctcagcatgtgtattcaaatttcttcttctacttgccatttcaatcaaaagcattccaaagctat 9486258  T
Q  146 acacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctcttgcagcagtcaaagttacaatgct 245  Q
    |||  || ||||| || || | |   || ||||||| |||||||||||| || ||||||||||| |||||||||||||| || ||||| ||  |||||||    
T  9486257 acatgtcagccttgtatgatattcctccgatattttggtagaacaattcaggagccatgtaaccgattgttcctcttgctgctgtcaaggtggcaatgct 9486158  T
Q  246 attgtcaactggataaagttttgcaacaccaaa 278  Q
     |||||||  |||||||| ||||||| ||||||    
T  9486157 tttgtcaataggataaagctttgcaagaccaaa 9486125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 9105084 - 9104973
Alignment:
Q  121 tccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctc 220  Q
    ||||| || ||||| ||||||||||| ||||| |||||||||||||||   |||||||||||||||||||||||||| ||||| || |||||||| ||||    
T  9105084 tccatcaaaagcatcccaaagctataaacatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctc 9104985  T
Q  221 ttgcagcagtca 232  Q
    ||||||||||||    
T  9104984 ttgcagcagtca 9104973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 9096902 - 9096791
Alignment:
Q  121 tccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctc 220  Q
    ||||| || ||||| ||||||||||| ||||| || ||||||||||||   |||||||||||||||||||||||||| ||||| || |||||||| ||||    
T  9096902 tccatcaaaagcatcccaaagctataaacatcagctttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctc 9096803  T
Q  221 ttgcagcagtca 232  Q
    ||||||||||||    
T  9096802 ttgcagcagtca 9096791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 9384239 - 9384368
Alignment:
Q  118 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 217  Q
    |||||||| || ||||||||||||||||| ||||| ||||| || || |||  |||||||||||||||||||| ||| || ||||||||||| |  ||||    
T  9384239 atttccatcaaaagcattccaaagctatatacatcagccttgtaagacactccaccaatatttttgtagaacagttcaggagccatgtaacccaaagttc 9384338  T
Q  218 ctcttgcagcagtcaaagttacaatgctat 247  Q
    ||||||| ||||| || || ||||||||||    
T  9384339 ctcttgccgcagttaaggtaacaatgctat 9384368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 251
Target Start/End: Original strand, 9488564 - 9488697
Alignment:
Q  118 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 217  Q
    ||||||||||| | ||||||||||||||| ||||| || || || || |||   |||||||| || ||||||||||||||||||||||| || || ||||    
T  9488564 atttccattaacaacattccaaagctataaacatctgctttgtacgatactcctccaatattcttatagaacaattctggtgccatgtatcccatagttc 9488663  T
Q  218 ctcttgcagcagtcaaagttacaatgctattgtc 251  Q
    |||||||||| || | ||  ||||||||||||||    
T  9488664 ctcttgcagctgtaagagacacaatgctattgtc 9488697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 8964529 - 8964656
Alignment:
Q  121 tccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctc 220  Q
    ||||| || ||||| ||||||||||| ||||| ||||||||||| |||   ||||||||||| |||||||||||||| ||||| || ||||| || ||||    
T  8964529 tccatcaaaagcatcccaaagctataaacatcagccttataggacactcccccaatatttttatagaacaattctggagccatatatccaatggtacctc 8964628  T
Q  221 ttgcagcagtcaaagttacaatgctatt 248  Q
    |||| || ||||  || |||||||||||    
T  8964629 ttgccgctgtcattgtgacaatgctatt 8964656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 8999680 - 8999807
Alignment:
Q  121 tccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctc 220  Q
    ||||| || ||||| ||||||||||| ||||| |||||||| || |||   ||||||||||| |||||||||||||| ||||| || ||||| || ||||    
T  8999680 tccatcaaaagcatcccaaagctataaacatcagccttataagacactcccccaatatttttatagaacaattctggagccatatatccaatggtacctc 8999779  T
Q  221 ttgcagcagtcaaagttacaatgctatt 248  Q
    |||| |||||||  || |||||||||||    
T  8999780 ttgccgcagtcattgtgacaatgctatt 8999807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 130 - 248
Target Start/End: Complemental strand, 8874152 - 8874034
Alignment:
Q  130 agcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctcttgcagcag 229  Q
    ||||| ||||| ||||| ||||| ||||||||||| |||  |||||||||||| || ||||||||||| ||||| || ||||| || |||||||| ||||    
T  8874152 agcatcccaaaactataaacatcagccttataggacactccaccaatatttttataaaacaattctggagccatatatccaatggtacctcttgccgcag 8874053  T
Q  230 tcaaagttacaatgctatt 248  Q
    |||  || |||||||||||    
T  8874052 tcattgtgacaatgctatt 8874034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 253
Target Start/End: Complemental strand, 9142964 - 9142832
Alignment:
Q  121 tccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctc 220  Q
    ||||| || ||||| || || ||||| ||||||||||||||||| |||   |||||||||||||||||||| || || ||||| || ||||| || ||||    
T  9142964 tccatcaaaagcatcccgaaactataaacatcggccttataggacactcccccaatatttttgtagaacaactccggagccatatatccaatagtacctc 9142865  T
Q  221 ttgcagcagtcaaagttacaatgctattgtcaa 253  Q
    |||| |||||||  || ||||||||||| ||||    
T  9142864 ttgctgcagtcattgtgacaatgctattctcaa 9142832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 248
Target Start/End: Original strand, 9056570 - 9056705
Alignment:
Q  113 ttgctatttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaat 212  Q
    |||| |||||||| || ||||| ||||| ||||| ||||| |||||||| || |||  ||||||||||||||| |||||||| || ||||| || |||||    
T  9056570 ttgccatttccatcaaaagcataccaaaactataaacatcagccttatacgacactccaccaatatttttgtaaaacaattcaggagccatatatccaat 9056669  T
Q  213 tgttcctcttgcagcagtcaaagttacaatgctatt 248  Q
    ||| ||| | || |||||||  || |||||||||||    
T  9056670 tgtgcctttggctgcagtcattgtgacaatgctatt 9056705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 9234155 - 9234026
Alignment:
Q  118 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 217  Q
    |||||||| || ||||||||||| || || ||||| || || || || |||  |||||||||||||||||||||||| || ||||||||||| |  ||||    
T  9234155 atttccatcaaaagcattccaaaactgtatacatcagctttgtacgacactccaccaatatttttgtagaacaattcaggagccatgtaacccaaagttc 9234056  T
Q  218 ctcttgcagcagtcaaagttacaatgctat 247  Q
    ||||||| ||||| || |  ||||||||||    
T  9234055 ctcttgccgcagttaacggaacaatgctat 9234026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 10974263 - 10974372
Alignment:
Q  121 tccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctc 220  Q
    |||||||| | ||| ||||||||||| ||||| || || || || | | | ||||||||| ||||||||| ||| || |||||||| ||||| |||||||    
T  10974263 tccattaacaacatcccaaagctatagacatcagctttgtaagatattgtgccaatatttctgtagaacagttcaggggccatgtatccaatcgttcctc 10974362  T
Q  221 ttgcagcagt 230  Q
    ||||||||||    
T  10974363 ttgcagcagt 10974372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 232
Target Start/End: Complemental strand, 9082704 - 9082521
Alignment:
Q  49 atccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgctatttccattaagagcattccaaagctataca 148  Q
    |||||| |||||||  ||| |||||||||||  ||||| || | |||||  ||| | ||| || |||| || ||||| || ||||| ||||| ||||| |    
T  9082704 atccaaaagggaaaataaagttggcttgaatgctctgccttggtgttcaggtttttcctcttgcttgccatctccatcaaaagcatcccaaaactataaa 9082605  T
Q  149 catcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctcttgcagcagtca 232  Q
    |||| ||||| || || |||   || |||||||||||||| || || || ||||| || |||||||| |||||||| |||||||    
T  9082604 catcagccttgtacgacactccccctatatttttgtagaataactcaggagccatatatccaattgtacctcttgctgcagtca 9082521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 9152517 - 9152406
Alignment:
Q  121 tccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctc 220  Q
    ||||| || ||||| ||||| ||||| ||||||||||||||||| |||   || |||||| |||| ||||||||| | ||||| || |||||||| | ||    
T  9152517 tccatcaaaagcatcccaaaactataaacatcggccttataggacactcccccgatatttatgtaaaacaattctagagccatatatccaattgtacatc 9152418  T
Q  221 ttgcagcagtca 232  Q
    |||  |||||||    
T  9152417 ttgatgcagtca 9152406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 9463970 - 9464078
Alignment:
Q  118 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 217  Q
    ||||||||||| | |||||||| |||||| ||||| || || || || |||   ||||| || || |||||||| |||||||||||||| || || ||||    
T  9463970 atttccattaacaacattccaa-gctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatcccatagttc 9464068  T
Q  218 ctcttgcagc 227  Q
    ||||||||||    
T  9464069 ctcttgcagc 9464078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 278
Target Start/End: Original strand, 9159514 - 9159766
Alignment:
Q  26 tttcttaaatcaattcattgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgctatttccat 125  Q
    |||||| |||||||| ||| |||||||||||||||||||||| ||||||||||  ||| |||| ||  || |||||||||| | |  |||| ||||||||    
T  9159514 tttcttcaatcaattgattataaatccaatagggaaagaaaagttggcttgaacgatccgcatgtggatttaaatttcttcgcttacttgccatttccat 9159613  T
Q  126 taagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctcttgca 225  Q
     || ||||||||||| ||||| ||||| ||||| || || |||  ||||||||||||||||||||| || || ||||| ||||||||||||||||||||     
T  9159614 caaaagcattccaaaactataaacatcagccttgtatgatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgct 9159713  T
Q  226 gcagtcaaagttacaatgctattgtcaactggataaagttttgcaacaccaaa 278  Q
    ||||| ||| ||||||| |||||||||   |||||||| ||||||| ||||||    
T  9159714 gcagttaaatttacaatactattgtcattaggataaagctttgcaagaccaaa 9159766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 15927392 - 15927132
Alignment:
Q  18 tatctccctttcttaaatcaattcattgtaaatccaatagggaaagaaaatttggcttgaatcatctgcatttgagttcaaatttcttctcctgtttgct 117  Q
    ||||||||||| || |||||||| ||| ||||||||| | || ||||||| ||||||||||  ||| |||| ||  || |||||||||||| |  ||||     
T  15927392 tatctcccttttttcaatcaattgattataaatccaaaaagggaagaaaagttggcttgaacgatccgcatgtggatttaaatttcttctcttacttgcc 15927293  T
Q  118 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 217  Q
    |||||||| || ||||||||||||||||| |||||||||||||| ||||||   ||||||||||||||||| ||||| || |||||||| ||||| ||||    
T  15927292 atttccatcaaaagcattccaaagctatatacatcggccttatacgaaactcctccaatatttttgtagaataattcaggagccatgtatccaatcgttc 15927193  T
Q  218 ctcttgcagcagtcaaagttacaatgctattgtcaactggataaagttttgcaacaccaaa 278  Q
    ||||||| ||||| ||||| ||||| ||| | |||   |||||||| ||||||| ||||||    
T  15927192 ctcttgctgcagttaaagtgacaatactaatctcattaggataaagctttgcaagaccaaa 15927132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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