View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8941_low_41 (Length: 276)
Name: NF8941_low_41
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 81 - 258
Target Start/End: Original strand, 3668383 - 3668560
Alignment:
| Q |
81 |
ttcagcaaaattcaaaacctgacaaacagaaccaccttcttcctccaccgtcactctctcctcctcatcttcatcacaaaagtaagatctttttccattc |
180 |
Q |
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| T |
3668383 |
ttcagcaaaattcaaaacctgacaaacagaaccaccttcttcctccaccatcactctctcctcctcatcttcatcacaaaagtaagatctttttccattc |
3668482 |
T |
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| Q |
181 |
aattcagcaactcttttaacagcaccagaatctctaggactctcatcaacaaacctcatcgtcgaaatcttcggtaac |
258 |
Q |
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| T |
3668483 |
aattcagcaactcttttaacagcaccagaatctctaggactctcatcaacaaacctcattgtcgaaatcttcggtaac |
3668560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 3668315 - 3668360
Alignment:
| Q |
16 |
caaaaacaaatcaattccaatttccacaattacccttgttcaccat |
61 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3668315 |
caaaaacaaatcaattccaatttccacaattacccttgttcaccat |
3668360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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