View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8941_low_5 (Length: 703)
Name: NF8941_low_5
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 392 - 689
Target Start/End: Original strand, 6089230 - 6089524
Alignment:
| Q |
392 |
ttcttgagctggtttcaaaaacctagaatccttcaaaacagaagcatatccagtaaatggaactgaaccaccacttcctcctcctccttcaaccaactct |
491 |
Q |
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| T |
6089230 |
ttcttgagctggtttcaaaaacctagaatccttcaaaacagaagcatatccagtaaatggaactgaaccaccacttcct---cctccttcaaccaaacct |
6089326 |
T |
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| Q |
492 |
tgaatcacacctccaccaccataaatcatagatccatatctttgtagattcaactccaaaggtaaattactactaacacttttatttgatgaaagtgaca |
591 |
Q |
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| T |
6089327 |
tgaatcacacctccaccaccataaatcatagatccatatctttgtagattcaactccaaaggtaaattactactaacacttttatttgatgaaagtgaca |
6089426 |
T |
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| Q |
592 |
aagacaaaggttcatgattattcaacatcatagtacttgtactactatgttgttcatcaaattgtctaagattttgaatgttttgtgcttgataaaga |
689 |
Q |
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| T |
6089427 |
aagacaaaggttcatgattattcaacatcatagtactagtactactatgttgttcatcaaattgtctaagattttgaatgttttgtgcttgataaaga |
6089524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 224 - 327
Target Start/End: Original strand, 6089062 - 6089165
Alignment:
| Q |
224 |
ctcatcaagcatagtcaacaatcttgatttattacgaccatcaccaaatggatcttcttcactcaatctttccaaaggagattccatcatcaaagaagaa |
323 |
Q |
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| T |
6089062 |
ctcatcaagcatagtcaacaatcttgatttattgcgaccatcaccaaatggatcttcttcactcaatctttccaaaggagattccatcatcaaagaagaa |
6089161 |
T |
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| Q |
324 |
tcag |
327 |
Q |
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|||| |
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| T |
6089162 |
tcag |
6089165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 6088862 - 6088903
Alignment:
| Q |
44 |
taatctaagagactaaaacagtaagtccatccacaaaatgac |
85 |
Q |
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| T |
6088862 |
taatctaagagactaaaccagtaagtccatccacaaaatgac |
6088903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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