View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8941_low_52 (Length: 260)

Name: NF8941_low_52
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8941_low_52
NF8941_low_52
[»] chr8 (1 HSPs)
chr8 (19-260)||(29272203-29272444)
[»] chr6 (39 HSPs)
chr6 (18-245)||(27609500-27609727)
chr6 (18-260)||(27716864-27717106)
chr6 (18-260)||(27696954-27697196)
chr6 (17-245)||(27680536-27680764)
chr6 (18-219)||(27704669-27704870)
chr6 (18-239)||(27603080-27603302)
chr6 (22-239)||(27591401-27591618)
chr6 (20-225)||(28787830-28788035)
chr6 (20-225)||(28793951-28794156)
chr6 (22-224)||(27676015-27676217)
chr6 (18-187)||(31286131-31286300)
chr6 (17-182)||(26648044-26648209)
chr6 (17-182)||(26754012-26754177)
chr6 (18-190)||(26624837-26625009)
chr6 (18-190)||(26730814-26730986)
chr6 (17-224)||(26804032-26804239)
chr6 (18-192)||(26863146-26863320)
chr6 (18-188)||(27529741-27529914)
chr6 (21-147)||(25491785-25491911)
chr6 (18-112)||(26885657-26885751)
chr6 (25-141)||(26813131-26813247)
chr6 (18-112)||(26657549-26657643)
chr6 (18-112)||(26763520-26763614)
chr6 (18-81)||(25075454-25075517)
chr6 (18-67)||(26850299-26850348)
chr6 (23-161)||(27663671-27663805)
chr6 (21-190)||(27426049-27426219)
chr6 (18-81)||(26978955-26979018)
chr6 (18-162)||(26951318-26951458)
chr6 (18-112)||(2186392-2186486)
chr6 (18-112)||(26637215-26637309)
chr6 (18-112)||(26743181-26743275)
chr6 (18-51)||(25546555-25546588)
chr6 (18-51)||(26057494-26057527)
chr6 (18-51)||(26077464-26077497)
chr6 (41-147)||(26960723-26960825)
chr6 (18-51)||(25484631-25484664)
chr6 (18-51)||(25581294-25581327)
chr6 (18-51)||(26144440-26144473)
[»] scaffold0349 (1 HSPs)
scaffold0349 (18-206)||(1957-2146)
[»] scaffold1870 (1 HSPs)
scaffold1870 (18-225)||(356-563)
[»] chr1 (3 HSPs)
chr1 (18-219)||(266755-266956)
chr1 (18-132)||(26137457-26137571)
chr1 (25-192)||(28126119-28126284)
[»] scaffold0277 (2 HSPs)
scaffold0277 (17-225)||(3103-3311)
scaffold0277 (17-225)||(12066-12274)
[»] scaffold0419 (1 HSPs)
scaffold0419 (18-224)||(9074-9280)
[»] scaffold0003 (1 HSPs)
scaffold0003 (21-190)||(61144-61314)
[»] chr4 (1 HSPs)
chr4 (21-190)||(18075336-18075506)
[»] chr2 (1 HSPs)
chr2 (18-70)||(17991755-17991807)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 29272444 - 29272203
Alignment:
Q  19 ggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29272444 ggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatctagttcgtgttttaagagaa 29272345  T
Q  119 aacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatt 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29272344 aacactgtgagtaagattgatatctatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatt 29272245  T
Q  219 tcttttcactcaattgcatgttaatatttgtacatcttattt 260  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  29272244 tattttcactcaattgcatgttaatatttgtacatcttattt 29272203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 27609727 - 27609500
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27609727 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagaga 27609628  T
Q  118 aaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcat 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  27609627 aaacactgtgagtaagattgatatctatgatcattttgttatttagttttaatacgactttgctctttttgcactaaatatgatcatctgatactagcat 27609528  T
Q  218 ttcttttcactcaattgcatgttaatat 245  Q
    |||||||||||||||| |||||||||||    
T  27609527 ttcttttcactcaattacatgttaatat 27609500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 27717106 - 27716864
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27717106 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagaga 27717007  T
Q  118 aaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcat 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| | || |||||    
T  27717006 aaacactgtgagtaagattgatatctatgatcattttgttatttagttttaatacaactttgctctttttgaactaaatatgatcatctaaaacgagcat 27716907  T
Q  218 ttcttttcactcaattgcatgttaatatttgtacatcttattt 260  Q
    |||||||||||||||| ||||||||||||| || |||||||||    
T  27716906 ttcttttcactcaattacatgttaatatttctatatcttattt 27716864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 27697196 - 27696954
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||  ||| |||||||||||    
T  27697196 aggacatgggtaaagaagtcgtccgacaagaatcaactaaagagcctggagaaagaagtaggttatgctgtcaggatgatataactcgggttttaagaga 27697097  T
Q  118 aaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcat 217  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  27697096 aaacactgtgagtaagattgatatctatgatcattttgttatttagttttaatacgactttgctctatttgcactaaatatgatcatctgatactagcat 27696997  T
Q  218 ttcttttcactcaattgcatgttaatatttgtacatcttattt 260  Q
    |||||||||||||||| ||||||||||||| || |||||||||    
T  27696996 ttcttttcactcaattacatgttaatatttctatatcttattt 27696954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 27680536 - 27680764
Alignment:
Q  17 aaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagag 116  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||  | || || |||||| ||| |||||||| ||    
T  27680536 aaggacatgggtaaagaagtcgtccgacaagaatcacctaaagagcctggagaacgaagtaggttatggcgtcaagaagatataattcatgttttaaaag 27680635  T
Q  117 aaaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagca 216  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  27680636 aaaacactgtgagtatgattgatatctatgatcattttgttatttagttttaatacgactttgctctttttgcactaaatatgatcatctgatactagca 27680735  T
Q  217 tttcttttcactcaattgcatgttaatat 245  Q
    ||||||||||||||||| |||||||||||    
T  27680736 tttcttttcactcaattacatgttaatat 27680764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 27704870 - 27704669
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| |||| |||    
T  27704870 aggatatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccatgatgatatagttaatgtcttaaaaga 27704771  T
Q  118 aaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcat 217  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||| ||    
T  27704770 aaacactgtgagtaagattgatatctatgatcattttgttatttagttttaatatgactttgctctttttggactaaatatgaccatctcatactagtat 27704671  T
Q  218 tt 219  Q
    ||    
T  27704670 tt 27704669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 27603302 - 27603080
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| || || || |||||||||| |||| ||| |||    
T  27603302 aggacatgggtaaagaagtcgtccgacaagaatcacctaaagagcctggagaaagaagtaggttatggtgtcaagacgatatagttcatgttctaacaga 27603203  T
Q  118 aaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgac-tttgctctttttggactaaatattatcatctgatactagca 216  Q
    |||||||||||||||||||||||||||  |||| |||||||||||||||||||| ||| |||| |||||||||||||||||| ||||||| ||||||  |    
T  27603202 aaacactgtgagtaagattgatatataatatcaatttgttatttagttttaatatgacttttggtctttttggactaaatatgatcatctcatactatta 27603103  T
Q  217 tttcttttcactcaattgcatgt 239  Q
    ||| ||| |||| |||| |||||    
T  27603102 tttttttccacttaattacatgt 27603080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 27591618 - 27591401
Alignment:
Q  22 catgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaac 121  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||| |  || ||||||||||||| |||||||| |||||||    
T  27591618 catgggtaaagaagtcgtccgacaagaatcacctaaagagcctggagaaagaagcaggttatggtctcaagatgatatagttcatgttttaaaagaaaac 27591519  T
Q  122 actgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttct 221  Q
    |||||| ||||||||||||| |||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||| | ||||| ||||||| || | |    
T  27591518 actgtgcgtaagattgatatctatgttcaatttgttatttagttttaatacaactttgctcattttggactaaatatgaccatctcatactagtatattt 27591419  T
Q  222 tttcactcaattgcatgt 239  Q
    || |||| |||| |||||    
T  27591418 ttccacttaattacatgt 27591401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 28787830 - 28788035
Alignment:
Q  20 gacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaa 119  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| || || ||||||||||||  |||||||| |||||    
T  28787830 gacatgggtaaagaagtcgtccgacaagaatcgcctaaagagcctggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaa 28787929  T
Q  120 acactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt 219  Q
    |||| ||||||| ||||||||| |||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||| | ||||| ||||||| ||||    
T  28787930 acaccgtgagtatgattgatatttatgttcaatttgttatttaattttgatacgactttgctctttttggactaaatatgaccatctcatactagtattt 28788029  T
Q  220 cttttc 225  Q
     |||||    
T  28788030 gttttc 28788035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 28793951 - 28794156
Alignment:
Q  20 gacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaa 119  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| || || ||||||||||||  |||||||| |||||    
T  28793951 gacatgggtaaagaagtcgtccgacaagaatcgcctaaagagcctggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaa 28794050  T
Q  120 acactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt 219  Q
    |||| ||||||| ||||||||| |||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||| | ||||| ||||||| ||||    
T  28794051 acaccgtgagtatgattgatatttatgttcaatttgttatttaattttgatacgactttgctctttttggactaaatatgaccatctcatactagtattt 28794150  T
Q  220 cttttc 225  Q
     |||||    
T  28794151 gttttc 28794156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 27676217 - 27676015
Alignment:
Q  22 catgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaac 121  Q
    ||||||||||||||| |||||||||||||||  ||||||||||||||||||||| |||||||| |  || ||||||||||||| |||||||| |||||||    
T  27676217 catgggtaaagaagtggtccgacaagaatcacctaaagagcctggagaaagaagcaggttatggtctcaagatgatatagttcatgttttaacagaaaac 27676118  T
Q  122 actgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttct 221  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||||||| | ||||||| ||||||||||||||| | ||||| ||| ||| |||| |    
T  27676117 actgtgagtaagattgatatctatgttcaatttgttatttagttttaatacaattttgctcattttggactaaatatgaccatctcatattagtattttt 27676018  T
Q  222 ttt 224  Q
    |||    
T  27676017 ttt 27676015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 31286131 - 31286300
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||| |||| || || ||||||||||||| || |||||  ||    
T  31286131 aggacatgggtaaagaagtcgtccgacaagaatcacctaaagagccaggagaaagaagtaggctatggtgtcaagatgatatagttcatgctttaaatga 31286230  T
Q  118 aaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctcttttt 187  Q
    |||||||||||||||||||||||| |||| ||| |||||||||||||||||| |||||||||||||||||    
T  31286231 aaacactgtgagtaagattgatatctatgttcaatttgttatttagttttaaaacgactttgctcttttt 31286300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 26648044 - 26648209
Alignment:
Q  17 aaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagag 116  Q
    |||||||||||||| ||||| |||||||||||||||  ||||||||||||||||  |||||||||||| || || ||||| ||||||| |||||||| ||    
T  26648044 aaggacatgggtaaggaagtagtccgacaagaatcacgtaaagagcctggagaacaaagtaggttatggtgtcaagatgaaatagttcatgttttaaaag 26648143  T
Q  117 aaaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctc 182  Q
    |||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||    
T  26648144 aaaacactgtgagtaagattaatatctatgatcaatttgttatttagttttaatacgactttgctc 26648209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 26754012 - 26754177
Alignment:
Q  17 aaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagag 116  Q
    |||||||||||||| ||||| |||||||||||||||  ||||||||||||||||  |||||||||||| || || ||||| ||||||| |||||||| ||    
T  26754012 aaggacatgggtaaggaagtagtccgacaagaatcacgtaaagagcctggagaacaaagtaggttatggtgtcaagatgaaatagttcatgttttaaaag 26754111  T
Q  117 aaaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctc 182  Q
    |||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||    
T  26754112 aaaacactgtgagtaagattaatatctatgatcaatttgttatttagttttaatacgactttgctc 26754177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 26624837 - 26625009
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    ||||||||||||||| | |||||||||||||||||  |||||||||||||||| ||||||| ||||| || || ||||||||| ||| |||||||| |||    
T  26624837 aggacatgggtaaagcaatcgtccgacaagaatcacctaaagagcctggagaacgaagtagattatggtgtcaagatgatatatttcatgttttaaaaga 26624936  T
Q  118 aaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttgga 190  Q
    ||||| |||||||||||||||||| |||||||| ||| ||||||||||||||||| |||||||||||||||||    
T  26624937 aaacagtgtgagtaagattgatatctatgatcaatttattatttagttttaatactactttgctctttttgga 26625009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 26730814 - 26730986
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    ||||||||||||||| | |||||||||||||||||  |||||||||||||||| ||||||| ||||| || || ||||||||| ||| |||||||| |||    
T  26730814 aggacatgggtaaagcaatcgtccgacaagaatcacctaaagagcctggagaacgaagtagattatggtgtcaagatgatatatttcatgttttaaaaga 26730913  T
Q  118 aaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttgga 190  Q
    ||||| |||||||||||||||||| |||||||| ||| ||||||||||||||||| |||||||||||||||||    
T  26730914 aaacagtgtgagtaagattgatatctatgatcaatttattatttagttttaatactactttgctctttttgga 26730986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 26804032 - 26804239
Alignment:
Q  17 aaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagag 116  Q
    ||||||||||||||||||||||||||||||||||||  |||||| |||| | || |||||||||||||  | || || |||||||||| |||| ||| ||    
T  26804032 aaggacatgggtaaagaagtcgtccgacaagaatcacctaaagatcctgaaaaacgaagtaggttatggcgtcatgaagatatagttcatgttataaaag 26804131  T
Q  117 aaaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagca 216  Q
    |||||| |||||||||||||||||| |||| ||| |||||||||||||||  ||||||||||||  |||| |||||| |||| | ||||| ||||||| |    
T  26804132 aaaacattgtgagtaagattgatatttatgttcaatttgttatttagtttagatacgactttgcatttttaggactacatatgaccatctcatactagta 26804231  T
Q  217 tttctttt 224  Q
    ||| ||||    
T  26804232 tttttttt 26804239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 26863146 - 26863320
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    |||||||||| |||||| ||||||||||||||||   ||||||||| || ||| ||||||||||||| || || ||||||||| | |  ||||||  |||    
T  26863146 aggacatgggcaaagaaatcgtccgacaagaatctcctaaagagccgggtgaacgaagtaggttatggtgtcatgatgatataatccacgttttagaaga 26863245  T
Q  118 aaacactgtgagtaagattgatatatatgatcattttgttatttagt-tttaatacgactttgctctttttggact 192  Q
    |||||||||||||||||||||||| ||||| || | ||||| ||||| ||||| || ||||||||| |||| ||||    
T  26863246 aaacactgtgagtaagattgatatttatgaacaatctgtta-ttagtctttaacacaactttgctcgttttagact 26863320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 27529914 - 27529741
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    |||||||||||||||||||||||||||||||||||    | |||||||||||| | |||||||| || |   ||  ||||||||||| |||||||| | |    
T  27529914 aggacatgggtaaagaagtcgtccgacaagaatcacccgatgagcctggagaacgcagtaggttgtggtttgagcgtgatatagttcatgttttaaaaaa 27529815  T
Q  118 aaacactgtgagtaagattgatatatatgatcattttgtt--atttag-ttttaatacgactttgctctttttg 188  Q
    |||||||||||||||||||||||| || || || ||||||  |||||| |||||| | ||| ||||||||||||    
T  27529814 aaacactgtgagtaagattgatatctaggaacaatttgttaaatttagcttttaacatgacattgctctttttg 27529741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 25491911 - 25491785
Alignment:
Q  21 acatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaa 120  Q
    ||||||||||||||||||| ||||||||||||  ||| || ||||||||| | |||||||| || || |  |||||||| ||||  ||||||||||||||    
T  25491911 acatgggtaaagaagtcgttcgacaagaatcacgtaatgatcctggagaacgtagtaggttgtggtgtcccgatgatatggttcaagttttaagagaaaa 25491812  T
Q  121 cactgtgagtaagattgatatatatga 147  Q
    ||| || |||||||||||||| |||||    
T  25491811 cacggtaagtaagattgatatctatga 25491785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 26885657 - 26885751
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtttta 112  Q
    ||||||||||||||||| |||| || |||||||||| |||||||||||||||| | ||||||||||| || || ||||||||||||| |||||||    
T  26885657 aggacatgggtaaagaaatcgttcggcaagaatcaagtaaagagcctggagaacgtagtaggttatggtgtcacgatgatatagttcatgtttta 26885751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 26813131 - 26813247
Alignment:
Q  25 gggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacact 124  Q
    |||||||||| | |||| ||||||||||  | |||| || |||||| |||||||| |||| || || ||||||||||||| |||||||| |||||||| |    
T  26813131 gggtaaagaaattgtccaacaagaatcacctgaagaaccaggagaacgaagtaggctatggtgtcaagatgatatagttcatgttttaaaagaaaacatt 26813230  T
Q  125 gtgagtaagattgatat 141  Q
    |||||||||||||||||    
T  26813231 gtgagtaagattgatat 26813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 26657549 - 26657643
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtttta 112  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||| |||||| | ||||||||||| || ||  |||| ||||||| |||||||    
T  26657549 aggacatgggtaaagaaatcgtccgacaagaatcaagtaaagagcccggagaacgtagtaggttatggtgtcacaatgacatagttcatgtttta 26657643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 26763520 - 26763614
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtttta 112  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||| |||||| | ||||||||||| || ||  |||| ||||||| |||||||    
T  26763520 aggacatgggtaaagaaatcgtccgacaagaatcaagtaaagagcccggagaacgtagtaggttatggtgtcacaatgacatagttcatgtttta 26763614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 25075454 - 25075517
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggtt 81  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||||||    
T  25075454 aggacatgggtaaagaaatcgtccgacatgaatcaattaaagagcctggagaacgtagtaggtt 25075517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 26850299 - 26850348
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctgga 67  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26850299 aggacatgggtaaagaaatcgtccgacaagaatcaattaaagagcctgga 26850348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 27663805 - 27663671
Alignment:
Q  23 atgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaaca 122  Q
    ||||||| |||| | ||||||||||||||||||||||||||||||||  | | |||||| ||  | || |||||||||| || |||||||| | ||||||    
T  27663805 atgggtatagaaatagtccgacaagaatcaattaaagagcctggagagcgcactaggttgtggcgtcatgatgatatagctcatgttttaaaacaaaaca 27663706  T
Q  123 ctgtgagtaagattgatatatatgatcattttgttattt 161  Q
    |    |||||||||||||| ||||| || ||||||||||    
T  27663705 c----agtaagattgatatctatgaacaatttgttattt 27663671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 27426219 - 27426049
Alignment:
Q  21 acatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaa 120  Q
    |||||||||||||| ||||||||| |||||||  |   ||||||||| ||||||| |||||||| |   |  | |||||| ||   ||| ||  ||||||    
T  27426219 acatgggtaaagaactcgtccgactagaatcaccttttgagcctggaaaaagaagcaggttatggtttgaaaaggatatatttgaagttctagaagaaaa 27426120  T
Q  121 cactgtgagtaagattgatatatatgatcattttgttatttag-ttttaatacgactttgctctttttgga 190  Q
    |||||||||||||||||||||  | || || |||||||||||| |||||| | ||||||||||||||||||    
T  27426119 cactgtgagtaagattgatatgcaggaacaatttgttatttagcttttaacatgactttgctctttttgga 27426049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 26978955 - 26979018
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggtt 81  Q
    |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||| | ||||||||    
T  26978955 aggatatgggtatagaaatcgtccgacaagaatcaattaaagaacctggagaacgcagtaggtt 26979018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 26951318 - 26951458
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    |||| ||||||| |||| || |||||||||||||||||| ||| ||||||||| | |||||||| || |  |  |||||||| |||| |||||||  |||    
T  26951318 aggatatgggtatagaaatcatccgacaagaatcaattagagaacctggagaacgcagtaggttgtggtctcgtgatgatattgttcatgttttacaaga 26951417  T
Q  118 aaacactgtgagtaagattgatatatatgatcattttgttattta 162  Q
    ||||||    |||||||||||||| | ||| || ||| |||||||    
T  26951418 aaacac----agtaagattgatatctgtgaacaatttattattta 26951458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 2186392 - 2186486
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtttta 112  Q
    |||| |||||||||||| |||| ||||||||||||   |||||||||||| || | |||||||| || | ||| || |||||||||| |||||||    
T  2186392 aggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatatagttcctgtttta 2186486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 26637215 - 26637309
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtttta 112  Q
    |||| ||||||| |||| |||||||||||||||||  |||  ||||||||||| | |||||||| || || || || |||||||||| |||||||    
T  26637215 aggatatgggtatagaaatcgtccgacaagaatcacgtaataagcctggagaacgcagtaggttgtggtgtcatgacgatatagttcatgtttta 26637309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 26743181 - 26743275
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtttta 112  Q
    |||| ||||||| |||| |||||||||||||||||  |||  ||||||||||| | |||||||| || || || || |||||||||| |||||||    
T  26743181 aggatatgggtatagaaatcgtccgacaagaatcacgtaataagcctggagaacgcagtaggttgtggtgtcatgacgatatagttcatgtttta 26743275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 25546555 - 25546588
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatc 51  Q
    ||||||||||||||||||||||||||||||||||    
T  25546555 aggacatgggtaaagaagtcgtccgacaagaatc 25546588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 26057494 - 26057527
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatc 51  Q
    ||||||||||||||||||||||||||||||||||    
T  26057494 aggacatgggtaaagaagtcgtccgacaagaatc 26057527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 26077464 - 26077497
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatc 51  Q
    ||||||||||||||||||||||||||||||||||    
T  26077464 aggacatgggtaaagaagtcgtccgacaagaatc 26077497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 26960723 - 26960825
Alignment:
Q  41 cgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgata 140  Q
    ||||| ||||||||||||||||||||| || | |||||||| || || |  ||||||||||||| |||||||  |||||| |     |||||||||||||    
T  26960723 cgacaggaatcaattaaagagcctggaaaacgcagtaggttgtggtgtcgtgatgatatagttcatgttttacaagaaaaaa----aagtaagattgata 26960818  T
Q  141 tatatga 147  Q
    |||||||    
T  26960819 tatatga 26960825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 25484631 - 25484664
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatc 51  Q
    |||||||||||||||||||||| |||||||||||    
T  25484631 aggacatgggtaaagaagtcgttcgacaagaatc 25484664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 25581294 - 25581327
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatc 51  Q
    ||||||||||||||||| ||||||||||||||||    
T  25581294 aggacatgggtaaagaaatcgtccgacaagaatc 25581327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 26144440 - 26144473
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatc 51  Q
    ||||||||||||||||| ||||||||||||||||    
T  26144440 aggacatgggtaaagaaatcgtccgacaagaatc 26144473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 2146 - 1957
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2146 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagaga 2047  T
Q  118 aaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttg-gactaaatattatcatct 206  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||  ||||||||| |||||||    
T  2046 aaacactgtgagtaagattgatatctatgatcattttgttatttagttttaatacaactttgctctttttgtaactaaatatgatcatct 1957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 356 - 563
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    |||||||||||||||||||||| |||||||||||   ||||||||| |||||||||||||||||||| || || ||||||||||||  |||||||| |||    
T  356 aggacatgggtaaagaagtcgtacgacaagaatcgcctaaagagccaggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaaga 455  T
Q  118 aaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcat 217  Q
    |||||||||||||||||||||||| |||| ||| |||||||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| ||    
T  456 aaacactgtgagtaagattgatatctatgttcaatttgttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtat 555  T
Q  218 ttcttttc 225  Q
    || |||||    
T  556 tttttttc 563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 266956 - 266755
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    ||||||||||||||||||| ||||| |||||||||  |||||||||||||||| ||||||||||||| || || ||||||||||||| ||||||||   |    
T  266956 aggacatgggtaaagaagtggtccgccaagaatcacctaaagagcctggagaacgaagtaggttatggtgtcaagatgatatagttcatgttttaaataa 266857  T
Q  118 aaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcat 217  Q
    ||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||| ||    
T  266856 aaacactgtgagtaagattgatatcaatgatcaatttgttatttagttttaatacgactttgctctttttggacaaaatatgaccatctcatactagtat 266757  T
Q  218 tt 219  Q
    ||    
T  266756 tt 266755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 26137457 - 26137571
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    |||| |||||||||||| | |||||||||||||||   ||||| |||||| || | |||||||| || |  || || |||||||||| |||||||| |||    
T  26137457 aggatatgggtaaagaaattgtccgacaagaatcacccaaagaacctggaaaacgcagtaggttgtggtttcatgaagatatagttcatgttttaaaaga 26137556  T
Q  118 aaacactgtgagtaa 132  Q
    ||| || ||||||||    
T  26137557 aaatacagtgagtaa 26137571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 192
Target Start/End: Complemental strand, 28126284 - 28126119
Alignment:
Q  25 gggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtttta-agagaaaacac 123  Q
    |||||||||| |||||||  ||||||||  |||||||||||||||| | |  |||||||| || ||  |||||||||||| |||| || ||| |||||||    
T  28126284 gggtaaagaaatcgtccggaaagaatcacgtaaagagcctggagaacgcaacaggttatggtgtcacaatgatatagttcatgttctacaga-aaaacac 28126186  T
Q  124 tgtgagtaagattgatatatatgatcattttgtta-tttagttttaat-acgactttgctctttttggact 192  Q
         ||||||||||||| ||||| || ||||||| ||||| |||||| | |||||  |||||||||||||    
T  28126185 ----ggtaagattgatatctatgaacaatttgttattttagctttaatcatgacttcactctttttggact 28126119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 3311 - 3103
Alignment:
Q  17 aaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagag 116  Q
    |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| ||||| ||  | ||||||||||||  |||||||| ||    
T  3311 aaggacatgggtaaagaagtcgtccgacaagaatcgcccaaagagcctggagaaagaagtagattatggtgtgaagatgatatagttaatgttttaaaag 3212  T
Q  117 aaaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagca 216  Q
    ||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| |    
T  3211 aaaacactgtgagtaagattgatatctatgttcaatttgttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagta 3112  T
Q  217 tttcttttc 225  Q
    ||| |||||    
T  3111 ttttttttc 3103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 12274 - 12066
Alignment:
Q  17 aaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagag 116  Q
    |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| ||||| ||  | ||||||||||||  |||||||| ||    
T  12274 aaggacatgggtaaagaagtcgtccgacaagaatcgcccaaagagcctggagaaagaagtagattatggtgtgaagatgatatagttaatgttttaaaag 12175  T
Q  117 aaaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagca 216  Q
    ||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| |    
T  12174 aaaacactgtgagtaagattgatatctatgttcaatttgttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagta 12075  T
Q  217 tttcttttc 225  Q
    ||| |||||    
T  12074 ttttttttc 12066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 9074 - 9280
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagaga 117  Q
    |||||||||||||||||||||| |||||||||||   ||||||||| |||||||||||||||||||| || || ||||||||||||  |||||||| |||    
T  9074 aggacatgggtaaagaagtcgtacgacaagaatcgcctaaagagccaggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaaga 9173  T
Q  118 aaacactgtgagtaagattgatatatatgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcat 217  Q
    |||||||||||||||||||||||| |||| ||| |||||||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||| ||| ||    
T  9174 aaacactgtgagtaagattgatatctatgttcaatttgttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatattagtat 9273  T
Q  218 ttctttt 224  Q
    || ||||    
T  9274 ttttttt 9280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 61144 - 61314
Alignment:
Q  21 acatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaa 120  Q
    |||||||||||||| ||||||||| |||||||  |   ||||||||| ||||||| |||||||| |   |  | |||||| ||   ||| ||  ||||||    
T  61144 acatgggtaaagaactcgtccgactagaatcaccttttgagcctggaaaaagaagcaggttatggtttgaaaaggatatatttgaagttctagaagaaaa 61243  T
Q  121 cactgtgagtaagattgatatatatgatcattttgttatttag-ttttaatacgactttgctctttttgga 190  Q
    |||||||||||||||||||||  | || || |||||||||||| |||||| | ||||||||||||||||||    
T  61244 cactgtgagtaagattgatatgcaggaacaatttgttatttagcttttaacatgactttgctctttttgga 61314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 18075336 - 18075506
Alignment:
Q  21 acatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaa 120  Q
    |||||||||||||| ||||||||| |||||||  |   ||||||||| ||||||| |||||||| |   |  | |||||| ||   ||| ||  ||||||    
T  18075336 acatgggtaaagaactcgtccgactagaatcaccttttgagcctggaaaaagaagcaggttatggtttgaaaaggatatatttgaagttctagaagaaaa 18075435  T
Q  121 cactgtgagtaagattgatatatatgatcattttgttatttag-ttttaatacgactttgctctttttgga 190  Q
    |||||||||||||||||||||  | || || |||||||||||| |||||| | ||||||||||||||||||    
T  18075436 cactgtgagtaagattgatatgcaggaacaatttgttatttagcttttaacatgactttgctctttttgga 18075506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 17991807 - 17991755
Alignment:
Q  18 aggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaa 70  Q
    ||||||||||||||||| |||| || |||||||||  ||||||||||||||||    
T  17991807 aggacatgggtaaagaaatcgttcggcaagaatcacctaaagagcctggagaa 17991755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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