View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8941_low_56 (Length: 244)
Name: NF8941_low_56
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_low_56 |
 | |
|
| [»] scaffold0018 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0018 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 68360 - 68590
Alignment:
| Q |
14 |
cacaacaacaaggtttcaccaaaaacacacctcctcaaccaaaatcatcatcatcttcttcctctctctttcaacattcatcgccattgttttcattgcc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
68360 |
cacaacaacaaggtttcaccaaaaacacacctcctcaaccaaaatcatcatcatcttcttcctctctctttcaacattcattgccattgttttcattgcc |
68459 |
T |
|
| Q |
114 |
aacaccatcttccattcttattcttctacttctctttcaatcgcttccaattggatcgtcgataaccccaacaccaccactataacaccaccacaacctc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
68460 |
aacaccatcttccattcttattcttctacttctctttcaatcgcttccaattggatcgtcgataaccccaacaccaccactataacaccaccacaacctc |
68559 |
T |
|
| Q |
214 |
ctcttgaggtgaaaaggtttctttctgctac |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
68560 |
ctcttgaggtgaaaaggtttctttctgctac |
68590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University