View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8941_low_70 (Length: 214)
Name: NF8941_low_70
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 9232335 - 9232157
Alignment:
| Q |
19 |
aggtatgttggagattcatgtatttttcaccgctttgaagagatcgaacaaagacctctcagctaagagtatcattgtcacattaattctggttttaaat |
118 |
Q |
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| T |
9232335 |
aggtatattggagattcatgtatttttcaccgctttgaagagatcgaacaaagacctctcatctaagagtatcattgtcacattaattctggttttaaat |
9232236 |
T |
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| Q |
119 |
tgcggttgcagagacttttaaaatcattatatg-ttacaattagggtttgtggaccgcaatttataactatgatgtgga |
196 |
Q |
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| T |
9232235 |
tgcggttgcagagacttttaaaatcattatatgtttacaattagggtttgtagaccgcaatttataactatggtgtgga |
9232157 |
T |
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