View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8942_high_5 (Length: 387)
Name: NF8942_high_5
Description: NF8942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8942_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 6 - 184
Target Start/End: Original strand, 7949891 - 7950069
Alignment:
| Q |
6 |
tattgcatgcaagaatgaactaatgcaacacaaaactaacaacaaattgtagtagattatttctttcgataagaaatggcttatattagatttgctcact |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7949891 |
tattgcatgcaagaatgaactaatgcaacacaaaactaacaacaaattgtagtagattatttctttcgataagaaatggcttatattagatttgctcact |
7949990 |
T |
|
| Q |
106 |
tggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcaccagtagtgcagtacacactgtcatat |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7949991 |
tggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcaccagtagtgcagtatacactgtcatat |
7950069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 187 - 365
Target Start/End: Original strand, 7950104 - 7950282
Alignment:
| Q |
187 |
ttcagagagtgaaaacctaaaattcctctctaattacatactaaattttgtgacgaggaaattcgagagggtttcattttttatgtcactgatttctgtc |
286 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7950104 |
ttcagagaggaaaaacgtaaaattcctctctaattacatactaaattttgtgacgaggaaattcgagagggtttcattttttatgtcactgatttctgtc |
7950203 |
T |
|
| Q |
287 |
gctaatactacttacatatgaaatccttctctagttctctaaaatttaccactaatttattatttcaagtaattgtatg |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7950204 |
gctaatactacttacatatgaaatccttctctaattctctaaaatttaccactaatttattatttcaagtaattgtatg |
7950282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 7941033 - 7941128
Alignment:
| Q |
65 |
tttctttcgataagaaatggcttatattagatttgctcacttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacca |
160 |
Q |
| |
|
||||||||| || ||||||||||| |||| | ||||| |||||||| |||||||||||| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
7941033 |
tttctttcggaaaaaaatggcttatcttaggctagctcatttggttgtcttcttgcttgccacattttgtatgtattttaaccttatttctcacca |
7941128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 7946591 - 7946669
Alignment:
| Q |
65 |
tttctttcgataagaaa-tggcttatattagatttgctcacttggttgttttcttgcttgccgcattctgtatgtattt |
142 |
Q |
| |
|
||||||||||||| ||| |||||||| |||| | ||||| |||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
7946591 |
tttctttcgataaaaaaatggcttatcttaggctagctcatttggttgtcttcttgcttgccacattttgtatgtattt |
7946669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 29473387 - 29473355
Alignment:
| Q |
225 |
tactaaattttgtgacgaggaaattcgagaggg |
257 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
29473387 |
tactaaattttgtgacgaggaaattagagaggg |
29473355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 30137407 - 30137353
Alignment:
| Q |
105 |
ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacc |
159 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
30137407 |
ttggctgtcttcttgcttgccgcattctgtatgtatttcaaccatctttctcacc |
30137353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 30143536 - 30143482
Alignment:
| Q |
105 |
ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacc |
159 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
30143536 |
ttggctgtcttcttgcttgccgcattctgtatgtatttcaaccatctttctcacc |
30143482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 30146958 - 30146904
Alignment:
| Q |
105 |
ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacc |
159 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
30146958 |
ttggctgtcttcttgcttgccgcattctgtatgtatttcaaccatctttctcacc |
30146904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 30173948 - 30173902
Alignment:
| Q |
114 |
ttcttgcttgccgcattctgtatgtattttaaccatatttctcacca |
160 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||| |||||||||| |
|
|
| T |
30173948 |
ttcttgcttgctgcattctgtatgtatttcaatcatctttctcacca |
30173902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 30069339 - 30069294
Alignment:
| Q |
114 |
ttcttgcttgccgcattctgtatgtattttaaccatatttctcacc |
159 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| || |||||| |
|
|
| T |
30069339 |
ttcttgcttgccgcattctgtatgtatttcaatcatcttcctcacc |
30069294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 30154675 - 30154647
Alignment:
| Q |
114 |
ttcttgcttgccgcattctgtatgtattt |
142 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30154675 |
ttcttgcttgccgcattctgtatgtattt |
30154647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 6803619 - 6803583
Alignment:
| Q |
8 |
ttgcatgcaagaatgaactaatgcaacacaaaactaa |
44 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6803619 |
ttgcatgcaagaatgaaataatgcaacacaaaactaa |
6803583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 6786235 - 6786183
Alignment:
| Q |
105 |
ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctca |
157 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
6786235 |
ttggttgtcttcttgcttgccatattctgtatgtattttagatatatttctca |
6786183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University