View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8942_low_12 (Length: 387)

Name: NF8942_low_12
Description: NF8942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8942_low_12
NF8942_low_12
[»] chr8 (5 HSPs)
chr8 (6-184)||(7949891-7950069)
chr8 (187-365)||(7950104-7950282)
chr8 (65-160)||(7941033-7941128)
chr8 (65-142)||(7946591-7946669)
chr8 (225-257)||(29473355-29473387)
[»] chr3 (6 HSPs)
chr3 (105-159)||(30137353-30137407)
chr3 (105-159)||(30143482-30143536)
chr3 (105-159)||(30146904-30146958)
chr3 (114-160)||(30173902-30173948)
chr3 (114-159)||(30069294-30069339)
chr3 (114-142)||(30154647-30154675)
[»] chr6 (2 HSPs)
chr6 (8-44)||(6803583-6803619)
chr6 (105-157)||(6786183-6786235)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 6 - 184
Target Start/End: Original strand, 7949891 - 7950069
Alignment:
Q  6 tattgcatgcaagaatgaactaatgcaacacaaaactaacaacaaattgtagtagattatttctttcgataagaaatggcttatattagatttgctcact 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7949891 tattgcatgcaagaatgaactaatgcaacacaaaactaacaacaaattgtagtagattatttctttcgataagaaatggcttatattagatttgctcact 7949990  T
Q  106 tggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcaccagtagtgcagtacacactgtcatat 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7949991 tggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcaccagtagtgcagtatacactgtcatat 7950069  T

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Target: chr8; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 187 - 365
Target Start/End: Original strand, 7950104 - 7950282
Alignment:
Q  187 ttcagagagtgaaaacctaaaattcctctctaattacatactaaattttgtgacgaggaaattcgagagggtttcattttttatgtcactgatttctgtc 286  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7950104 ttcagagaggaaaaacgtaaaattcctctctaattacatactaaattttgtgacgaggaaattcgagagggtttcattttttatgtcactgatttctgtc 7950203  T
Q  287 gctaatactacttacatatgaaatccttctctagttctctaaaatttaccactaatttattatttcaagtaattgtatg 365  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7950204 gctaatactacttacatatgaaatccttctctaattctctaaaatttaccactaatttattatttcaagtaattgtatg 7950282  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 7941033 - 7941128
Alignment:
Q  65 tttctttcgataagaaatggcttatattagatttgctcacttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacca 160  Q
    |||||||||  || ||||||||||| ||||  | ||||| |||||||| |||||||||||| |||| |||||||||||||||| ||||||||||||    
T  7941033 tttctttcggaaaaaaatggcttatcttaggctagctcatttggttgtcttcttgcttgccacattttgtatgtattttaaccttatttctcacca 7941128  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 7946591 - 7946669
Alignment:
Q  65 tttctttcgataagaaa-tggcttatattagatttgctcacttggttgttttcttgcttgccgcattctgtatgtattt 142  Q
    ||||||||||||| ||| |||||||| ||||  | ||||| |||||||| |||||||||||| |||| |||||||||||    
T  7946591 tttctttcgataaaaaaatggcttatcttaggctagctcatttggttgtcttcttgcttgccacattttgtatgtattt 7946669  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 29473387 - 29473355
Alignment:
Q  225 tactaaattttgtgacgaggaaattcgagaggg 257  Q
    ||||||||||||||||||||||||| |||||||    
T  29473387 tactaaattttgtgacgaggaaattagagaggg 29473355  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 30137407 - 30137353
Alignment:
Q  105 ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacc 159  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  30137407 ttggctgtcttcttgcttgccgcattctgtatgtatttcaaccatctttctcacc 30137353  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 30143536 - 30143482
Alignment:
Q  105 ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacc 159  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  30143536 ttggctgtcttcttgcttgccgcattctgtatgtatttcaaccatctttctcacc 30143482  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 30146958 - 30146904
Alignment:
Q  105 ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacc 159  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  30146958 ttggctgtcttcttgcttgccgcattctgtatgtatttcaaccatctttctcacc 30146904  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 30173948 - 30173902
Alignment:
Q  114 ttcttgcttgccgcattctgtatgtattttaaccatatttctcacca 160  Q
    ||||||||||| ||||||||||||||||| || ||| ||||||||||    
T  30173948 ttcttgcttgctgcattctgtatgtatttcaatcatctttctcacca 30173902  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 30069339 - 30069294
Alignment:
Q  114 ttcttgcttgccgcattctgtatgtattttaaccatatttctcacc 159  Q
    ||||||||||||||||||||||||||||| || ||| || ||||||    
T  30069339 ttcttgcttgccgcattctgtatgtatttcaatcatcttcctcacc 30069294  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 30154675 - 30154647
Alignment:
Q  114 ttcttgcttgccgcattctgtatgtattt 142  Q
    |||||||||||||||||||||||||||||    
T  30154675 ttcttgcttgccgcattctgtatgtattt 30154647  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 6803619 - 6803583
Alignment:
Q  8 ttgcatgcaagaatgaactaatgcaacacaaaactaa 44  Q
    ||||||||||||||||| |||||||||||||||||||    
T  6803619 ttgcatgcaagaatgaaataatgcaacacaaaactaa 6803583  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 6786235 - 6786183
Alignment:
Q  105 ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctca 157  Q
    |||||||| ||||||||||||  |||||||||||||||||   ||||||||||    
T  6786235 ttggttgtcttcttgcttgccatattctgtatgtattttagatatatttctca 6786183  T

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