View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8942_low_16 (Length: 204)
Name: NF8942_low_16
Description: NF8942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8942_low_16 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 11543049 - 11543237
Alignment:
| Q |
16 |
agaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttagatgtgaaggaaattggaagaggcggtgatagaaagaagtaa |
115 |
Q |
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| T |
11543049 |
agaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttagatgtgaaggaaattggaagaggcggtgatagaaagaagtaa |
11543148 |
T |
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| Q |
116 |
atccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatagaacatcacagatcaaaggaagagagttct |
204 |
Q |
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| T |
11543149 |
atccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatagaacatcacagatcaaaggaagagagttct |
11543237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 181; Significance: 5e-98; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 10889546 - 10889734
Alignment:
| Q |
16 |
agaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttagatgtgaaggaaattggaagaggcggtgatagaaagaagtaa |
115 |
Q |
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| T |
10889546 |
agaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttagatgtgaaggaaattggaagaggcggtgatagaaagaagtaa |
10889645 |
T |
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| Q |
116 |
atccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatagaacatcacagatcaaaggaagagagttct |
204 |
Q |
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| T |
10889646 |
atccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatagagcatcacagatcaaaggaagaaagttct |
10889734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 22406997 - 22406909
Alignment:
| Q |
16 |
agaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttagatgtgaaggaaattggaagaggcggtgata |
104 |
Q |
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| T |
22406997 |
agaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttagatgtgaaggaaattggaagaggcggtgata |
22406909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 23165365 - 23165262
Alignment:
| Q |
93 |
gaggcggtgatagaaagaagtaaatccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatagaacatcacagatcaaag |
192 |
Q |
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| T |
23165365 |
gaggcggtgatagaaagaagtaaatccttaatgttgaaggaattttggggcggtaaatcggaattttacagggctatatatagagcatcacagatcaaag |
23165266 |
T |
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| Q |
193 |
gaag |
196 |
Q |
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|||| |
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| T |
23165265 |
gaag |
23165262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 23576622 - 23576519
Alignment:
| Q |
93 |
gaggcggtgatagaaagaagtaaatccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatagaacatcacagatcaaag |
192 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
23576622 |
gaggcggtgatagaaagaagtaaatccttaatgttgaaggaattttggggcggtaaatcggaattttacagggctatatatagagcatcacagatcaaag |
23576523 |
T |
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| Q |
193 |
gaag |
196 |
Q |
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|||| |
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| T |
23576522 |
gaag |
23576519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 119054 - 119242
Alignment:
| Q |
16 |
agaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttagatgtgaaggaaattggaagaggcggtgatagaaagaagtaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
119054 |
agaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttagatatgaaggaaattggaagaggcggtgatagaaagaagtaa |
119153 |
T |
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| Q |
116 |
atccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatagaacatcacagatcaaaggaagagagttct |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
119154 |
atccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatagagcatcacagatcaaaggaagaaagttct |
119242 |
T |
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