View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8942_low_2 (Length: 792)
Name: NF8942_low_2
Description: NF8942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8942_low_2 |
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| [»] scaffold0565 (2 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 316 - 769
Target Start/End: Original strand, 4197 - 4648
Alignment:
| Q |
316 |
gtgacataatatgagccattagatcaattcattataacggttgatatttgatgtaaccctagtgttaacggattctaactcatataatgcatatagaaaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4197 |
gtgacataatatgagccattagatcaattcattataacggttgatatttggtgtaaccctagtgttaacggattctaacttatataatgcatatagaaaa |
4296 |
T |
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| Q |
416 |
agagtctgaccctaagttgctgagcatatgcttgaagaaggacattagcatattgttgaggtgtgaattgtctactagtggaatagattgtaggcatgaa |
515 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4297 |
agagtctgaccctgagttgctgagcatatgcttgaagaaggacattagcatattgttgaggtgtgaattgtctactagtggaatagattgtaggcatgaa |
4396 |
T |
|
| Q |
516 |
ataattgttaaggtaatcattgctacccaatccaattgtataaatgcacttgctaagataatttgcagcagtgttctcatctccaaaataatttaccaat |
615 |
Q |
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| T |
4397 |
ataattgttaaggtaatcattgctacccaatccaattgtataaatgcacttgctaagataatttgcagcagtgttctcatctccaaaataatttaccaat |
4496 |
T |
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| Q |
616 |
tgggacactgtcctttggtaattttgcacttgccctctaaaactaattcgttgtccctac-aaaatagtgataaattatggaaagtaattaaggatgtgg |
714 |
Q |
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| T |
4497 |
tgggacactgtcctttggtaattttgcacttgccctctaaaactaattcgttgtccctacaaaaatagtgataaattatggaaaataattaaggat---g |
4593 |
T |
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| Q |
715 |
tggctatccaaatgaagtaaaaagataatcatatgtgacattattaattagaagc |
769 |
Q |
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| T |
4594 |
tggctatccaaatgaagtaaaaaaataatcatatgtgacattattaattagaagc |
4648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 3946 - 4195
Alignment:
| Q |
20 |
aaagataccataaacatttacataaatgaatcttgcatcaggaagttggttattgagttgatcaacaagagatcttaatccattgttgaataattgattt |
119 |
Q |
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| T |
3946 |
aaagataccataaacatttacataaatgaatcttgcatcaggaagttggttattgagttgatcaacaagagatcttaatccattgttgaataattgattt |
4045 |
T |
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| Q |
120 |
gcagaattgattcttgctacacatgttctaccatctgggctgttttgggccaatgcatttggggtgcaacctatttgaccaactccaaataacgccattt |
219 |
Q |
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| T |
4046 |
gcagaattgattcttgctacacatgttctaccatctgggctgttttgggccaatgcatttggggtgcaacctatttgaccaactccaaataacgccattt |
4145 |
T |
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| Q |
220 |
tccttgccccataattatataaaatctgaatcacaaacacaaaaattgaa |
269 |
Q |
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| T |
4146 |
tccttgccccataattatataaaatctgaattacaaacacaaaaattgaa |
4195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 5e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 424 - 678
Target Start/End: Complemental strand, 7614900 - 7614649
Alignment:
| Q |
424 |
accctaagttgctgagcatatgcttgaagaaggacattagcatattgttgaggtgtgaattgtctactagtggaatagattgtaggcatgaaataattgt |
523 |
Q |
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||||| ||||| |||||||||||||||| ||| |||| |||||| ||||| ||||| || ||||||| | ||| ||| | |||||||||||| |||| |
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| T |
7614900 |
accctgagttgttgagcatatgcttgaataagaacatcagcatactgttgtggtgtaaactgtctaccactgggataa---gcaggcatgaaatagttgt |
7614804 |
T |
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| Q |
524 |
taaggtaatcattgctacccaatccaattgtataaatgcacttgctaagataatttgcagcagtgttctcatctccaaaataatttaccaattgggacac |
623 |
Q |
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|||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||| ||| || | ||||||||||| ||||||||| ||||||||| |
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| T |
7614803 |
taaggtaatcattgctacccaatccaatggaatagatgcatttgctaagataatttgaagctgtatcctcatctccaagcaaatttaccacttgggacac |
7614704 |
T |
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| Q |
624 |
tgtcctttggtaattttgcacttgccctctaaaactaattcgttgtccctacaaa |
678 |
Q |
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|||| ||||||| ||||| |||||||| ||||||||||| || | |||||||||| |
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| T |
7614703 |
tgtcttttggtagttttgtacttgcccactaaaactaatacgatctccctacaaa |
7614649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 24 - 266
Target Start/End: Complemental strand, 7615889 - 7615647
Alignment:
| Q |
24 |
ataccataaacatttacataaatgaatcttgcatcaggaagttggttattgagttgatcaacaagagatcttaatccattgttgaataattgatttgcag |
123 |
Q |
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||||||||| ||||||||| |||||||||||||| | ||| | || |||||||||| |||||||||| | ||||| ||||| |||||||| ||||||| |
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| T |
7615889 |
ataccataagtatttacatagatgaatcttgcatccgtaagctcattgttgagttgattaacaagagatttcaatccgttgttaaataattggtttgcag |
7615790 |
T |
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| Q |
124 |
aattgattcttgctacacatgttctaccatctgggctgttttgggccaatgcatttggggtgcaacctatttgaccaactccaaataacgccattttcct |
223 |
Q |
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| T |
7615789 |
aatttattctttcaacacaagtggtaccatctggactgttttgagctaattcatttggactgcaacctatttgaccaatcccaaataaagccattttcct |
7615690 |
T |
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| Q |
224 |
tgccccataattatataaaatctgaatcacaaacacaaaaatt |
266 |
Q |
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||| ||||| ||||| ||||||| | |||||||||||| |||| |
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| T |
7615689 |
tgctccatagttatacaaaatctaagtcacaaacacaacaatt |
7615647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 507 - 678
Target Start/End: Complemental strand, 8491948 - 8491777
Alignment:
| Q |
507 |
aggcatgaaataattgttaaggtaatcattgctacccaatccaattgtataaatgcacttgctaagataatttgcagcagtgttctcatctccaaaataa |
606 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||| ||| || |||| |||||||| || |
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| T |
8491948 |
aggcatgaaatagttgttaaggtaatcattgctacccaatccaatggaatagatgcatttgctaagataatttgaagctgtattctaatctccaagcaaa |
8491849 |
T |
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| Q |
607 |
tttaccaattgggacactgtcctttggtaattttgcacttgccctctaaaactaattcgttgtccctacaaa |
678 |
Q |
| |
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|||| || ||||||||||||| ||||||| ||||| ||||| || ||||||||||| || | |||||||||| |
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| T |
8491848 |
tttatcacttgggacactgtcttttggtagttttgtacttgaccactaaaactaatacgatctccctacaaa |
8491777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 507 - 569
Target Start/End: Original strand, 36362234 - 36362296
Alignment:
| Q |
507 |
aggcatgaaataattgttaaggtaatcattgctacccaatccaattgtataaatgcacttgct |
569 |
Q |
| |
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| T |
36362234 |
aggcatgaaatagttgttcaagtaatcattgctacccaatccaattgagtaaatacacttgct |
36362296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 36361847 - 36362007
Alignment:
| Q |
102 |
ttgttgaataattgatttgcagaattgattcttgctacacatgttctaccatctgggctgttttgggccaatgcatttggggtgcaacctatttgaccaa |
201 |
Q |
| |
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|||||||||| ||| ||||| ||||||||| | | ||||||||| ||||||| ||| || |||||| |||||||| |||| ||||||||||||| |
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| T |
36361847 |
ttgttgaatatttggtttgctgaattgatttcttccacacatgttacgccatctgcgctccttgtagccaattcatttgggctgcagcctatttgaccaa |
36361946 |
T |
|
| Q |
202 |
ctccaaataacgccattttccttgccccataattatataaaatctgaatcacaaacacaaa |
262 |
Q |
| |
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||||||| ||||||||||||| || | ||||| | | ||||||||||||| ||||| |
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| T |
36361947 |
tcccaaatagtaccattttccttgctccgttgttataaagagtctgaatcacaaatacaaa |
36362007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 21723378 - 21723432
Alignment:
| Q |
317 |
tgacataatatgagccattagatcaattcattataacggttgatatttgatgtaa |
371 |
Q |
| |
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||||||||||||| | ||||||||||| |||| ||||||||| ||||||||||| |
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| T |
21723378 |
tgacataatatgaactcttagatcaattaattacaacggttgagatttgatgtaa |
21723432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 360
Target Start/End: Original strand, 1614432 - 1614469
Alignment:
| Q |
323 |
aatatgagccattagatcaattcattataacggttgat |
360 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||| |
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| T |
1614432 |
aatatgagccattggatcaattaattataacggttgat |
1614469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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