View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8942_low_3 (Length: 541)

Name: NF8942_low_3
Description: NF8942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8942_low_3
NF8942_low_3
[»] chr5 (23 HSPs)
chr5 (1-526)||(33698527-33699056)
chr5 (221-341)||(33680120-33680240)
chr5 (5-139)||(33736436-33736571)
chr5 (10-148)||(33680375-33680513)
chr5 (30-139)||(33823142-33823251)
chr5 (221-352)||(33867043-33867174)
chr5 (436-522)||(33679814-33679900)
chr5 (28-124)||(33867319-33867415)
chr5 (16-124)||(33904863-33904971)
chr5 (220-350)||(33904606-33904736)
chr5 (442-517)||(33904399-33904474)
chr5 (44-124)||(33763721-33763801)
chr5 (221-360)||(33734537-33734676)
chr5 (440-522)||(33865885-33865967)
chr5 (443-519)||(33762767-33762843)
chr5 (241-360)||(33763367-33763486)
chr5 (440-519)||(33734305-33734384)
chr5 (227-338)||(33749031-33749142)
chr5 (440-519)||(33821635-33821714)
chr5 (221-360)||(33821804-33821943)
chr5 (38-139)||(33750176-33750277)
chr5 (440-510)||(33748786-33748856)
chr5 (440-510)||(33834906-33834976)
[»] scaffold0001 (3 HSPs)
scaffold0001 (37-138)||(149251-149352)
scaffold0001 (226-350)||(149007-149131)
scaffold0001 (442-511)||(148790-148859)
[»] chr8 (3 HSPs)
chr8 (440-517)||(21305875-21305952)
chr8 (31-125)||(21306328-21306422)
chr8 (220-347)||(21306051-21306178)
[»] chr7 (3 HSPs)
chr7 (219-341)||(5470127-5470249)
chr7 (41-125)||(5468533-5468617)
chr7 (442-511)||(5471194-5471263)
[»] scaffold0023 (3 HSPs)
scaffold0023 (220-341)||(90070-90191)
scaffold0023 (440-517)||(114205-114282)
scaffold0023 (41-125)||(88893-88977)
[»] scaffold0247 (3 HSPs)
scaffold0247 (220-360)||(21873-22013)
scaffold0247 (39-139)||(19852-19952)
scaffold0247 (443-505)||(22155-22217)
[»] scaffold0193 (3 HSPs)
scaffold0193 (39-139)||(23300-23400)
scaffold0193 (220-278)||(24288-24346)
scaffold0193 (440-510)||(25216-25286)
[»] scaffold0251 (1 HSPs)
scaffold0251 (232-270)||(9870-9908)
[»] scaffold0008 (1 HSPs)
scaffold0008 (232-274)||(237173-237215)


Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 33699056 - 33698527
Alignment:
Q  1 aaataaggaaagtgcatatggagaaggctagaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33699056 aaataaggaaagtgcatatggagaaggctagaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatgg 33698957  T
Q  101 tgaaggaaaatggcatttagttcctaaacgaacaggtatttgtatttagctagaagtaactcatgagaaaccatgcttaattatattatgtatagtttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33698956 tgaaggaaaatggcatttagttcctaaacgaacaggtatttgtatttagctagaagtaactcatgagaaaccatgcttaatcatattatgtatagtttgt 33698857  T
Q  201 caaaatttgttacatatatacaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33698856 caaaatttgttacatatatacaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttc 33698757  T
Q  301 gccgaggatgaaattgatatgattctaaggttacacaaacttctagggaacaagtaagctatcaagttaattttgttttggttacctatcaaattaaatt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  33698756 gccgaggatgaaattgatatgattctaaggttacacaaacttctagggaacaagtaagctatcaagttaattttgttttggttacctatcaagttaaact 33698657  T
Q  401 tttggtgacctaggtaagagtataatat----atgtttgtatgtatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaag 496  Q
    |||||||||||| |||||||||||||||    |||| |||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  33698656 tttggtgacctaagtaagagtataatatatgtatgtatgtatgtatagatggtctttgattgctgcaaggcttccgggtaggacagctaatgatgtgaag 33698557  T
Q  497 aattattggcacacaaatttgcgcaaaaaa 526  Q
    ||||||||||||||||||||||||||||||    
T  33698556 aattattggcacacaaatttgcgcaaaaaa 33698527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 221 - 341
Target Start/End: Complemental strand, 33680240 - 33680120
Alignment:
Q  221 caggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgatat 320  Q
    ||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| || | ||||||||||||||    
T  33680240 caggtttgaatagatgccggaaaagttgtagattgaggtgggtgaattatttaaaccctgcaatcaatagagaaagtttctcccatgatgaaattgatat 33680141  T
Q  321 gattctaaggttacacaaact 341  Q
    |||||||||| ||||||||||    
T  33680140 gattctaaggctacacaaact 33680120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 33736571 - 33736436
Alignment:
Q  5 aaggaaag-tgcatatggagaaggctagaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtga 103  Q
    |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||||||||||| || || |||||||||||    
T  33736571 aaggaaagctgcatatggagaagactagaagtttgagaaaaggtgcatggacatatgaggaagacaagctactcaaggcttgtatacagaagtatggtga 33736472  T
Q  104 aggaaaatggcatttagttcctaaacgaacaggtat 139  Q
    ||||||||||||||||||| || || || |||||||    
T  33736471 aggaaaatggcatttagtttctcaaagagcaggtat 33736436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 33680513 - 33680375
Alignment:
Q  10 aagtgcatatggagaaggctagaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaa 109  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| || |||||||||||||  || || || || ||||||||||| ||    
T  33680513 aagtgcatatggaaaagaccagaggtttgagaaaaggtgcatggacatatgaggaggacaatctactcaaggactgtattcaaaaatatggtgaagggaa 33680414  T
Q  110 atggcatttagttcctaaacgaacaggtatttgtattta 148  Q
    ||||||||||||||||||| || |||||| |||||||||    
T  33680413 atggcatttagttcctaaaagagcaggtacttgtattta 33680375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 33823251 - 33823142
Alignment:
Q  30 agaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcctaaac 129  Q
    |||||||||||||||||||||||||||||||||||||| ||  |||||||||||| ||| |||||||||||||||||||||||||||||| |||| |||     
T  33823251 agaggtttgagaaaaggtgcatggacatatgaggaagacaacttactcaaggcttacattcacaagtatggtgaaggaaaatggcatttaattcccaaaa 33823152  T
Q  130 gaacaggtat 139  Q
    ||||||||||    
T  33823151 gaacaggtat 33823142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 221 - 352
Target Start/End: Complemental strand, 33867174 - 33867043
Alignment:
Q  221 caggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgatat 320  Q
    |||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||| |||||  | ||||||||| |||||||    
T  33867174 caggattgaataggtgccggaaaagttgtagattgaggtggttaaattatttaaaccccaccatcaatagagagagtttttctgaggatgaagttgatat 33867075  T
Q  321 gattctaaggttacacaaacttctagggaaca 352  Q
    |||| ||||||||||||| ||| |||||||||    
T  33867074 gattttaaggttacacaagcttttagggaaca 33867043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 436 - 522
Target Start/End: Complemental strand, 33679900 - 33679814
Alignment:
Q  436 tatgtatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttgcgcaa 522  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33679900 tatgtatagatggtcattgattgctgcgaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttgcgcaa 33679814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 33867415 - 33867319
Alignment:
Q  28 ctagaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcc 124  Q
    |||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| || || ||||||||||||||||||||||||||||||||    
T  33867415 ctagaggtgtgagaaaaggtgcatggacatatgaggaagacaagctactcaaggcttgtatgcagaagtatggtgaaggaaaatggcatttagttcc 33867319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 33904971 - 33904863
Alignment:
Q  16 atatggagaaggctagaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggca 115  Q
    ||||||||| | | |||||  ||||||||||||||||||||||||||||||| || |||||||||||||| || || |||||||||||||||||||||||    
T  33904971 atatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagacaagctactcaaggcttgtatacagaagtatggtgaaggaaaatggca 33904872  T
Q  116 tttagttcc 124  Q
    |||||||||    
T  33904871 tttagttcc 33904863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 220 - 350
Target Start/End: Complemental strand, 33904736 - 33904606
Alignment:
Q  220 acaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgata 319  Q
    ||||| ||||||||||| || ||||| ||||||||||||||||| |||||||||| ||||   ||||| || ||||| || || ||||||||| ||||||    
T  33904736 acaggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaacccccaacatcaaaagggaaagctttgctgaggatgaagttgata 33904637  T
Q  320 tgattctaaggttacacaaacttctagggaa 350  Q
    |||| ||||||||||||||||||||||||||    
T  33904636 tgatgctaaggttacacaaacttctagggaa 33904606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 442 - 517
Target Start/End: Complemental strand, 33904474 - 33904399
Alignment:
Q  442 tagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttg 517  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33904474 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttg 33904399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 33763801 - 33763721
Alignment:
Q  44 aggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcc 124  Q
    |||||| |||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||| |||||    
T  33763801 aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcattttgttcc 33763721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 360
Target Start/End: Complemental strand, 33734676 - 33734537
Alignment:
Q  221 caggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgatat 320  Q
    |||| |||||||| ||||| ||||||||||||||||||||| | |||||||||  |||    ||||| || ||||| || || ||||||||| |||||||    
T  33734676 caggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttatgccctaacatcaaaagggaaagctttgctgaggatgaagttgatat 33734577  T
Q  321 gattctaaggttacacaaacttctagggaacaagtaagct 360  Q
    ||| |||||||||||||||||||||||||| | |||||||    
T  33734576 gatcctaaggttacacaaacttctagggaataggtaagct 33734537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 440 - 522
Target Start/End: Complemental strand, 33865967 - 33865885
Alignment:
Q  440 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttgcgcaa 522  Q
    |||||||||||  ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  33865967 tatagatggtcattgattgctgcaagactcccgggtagaacagctaatgatgtgaagaattattggcacacacatttacgcaa 33865885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 443 - 519
Target Start/End: Complemental strand, 33762843 - 33762767
Alignment:
Q  443 agatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttgcg 519  Q
    ||||||||  ||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||    
T  33762843 agatggtcattgattgctgcaaggcttcccggtagaacagcgaatgatgtgaaaaactattggcacacaaatttgcg 33762767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 360
Target Start/End: Complemental strand, 33763486 - 33763367
Alignment:
Q  241 aaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgatatgattctaaggttacacaaac 340  Q
    ||||||||||||||||||||||| |||||||||| ||||   ||||| || ||||| || || ||||||||| ||||| |||| ||||||||||| ||||    
T  33763486 aaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatctgatcctaaggttacaaaaac 33763387  T
Q  341 ttctagggaacaagtaagct 360  Q
    ||||||| || | |||||||    
T  33763386 ttctaggtaataggtaagct 33763367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 440 - 519
Target Start/End: Complemental strand, 33734384 - 33734305
Alignment:
Q  440 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttgcg 519  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||||| || | |||||||||| |||||||    
T  33734384 tatagatggtcattgattgctgcaaggcttcctggtagaactgctaatgatgtgaaaaacttttggcacacacatttgcg 33734305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 338
Target Start/End: Complemental strand, 33749142 - 33749031
Alignment:
Q  227 tgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgatatgattct 326  Q
    ||||||||||  | ||||||||||||||||| ||||| ||||||||||||||  | |||||||||||||  ||  | |||||||||  ||||||||| ||    
T  33749142 tgaataggtgcagaaaaagttgtagattgagatggttaaattatttaaacccaaccatcaacagagaaatcttttctgaggatgaagctgatatgatcct 33749043  T
Q  327 aaggttacacaa 338  Q
     |||||||||||    
T  33749042 taggttacacaa 33749031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 440 - 519
Target Start/End: Complemental strand, 33821714 - 33821635
Alignment:
Q  440 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttgcg 519  Q
    |||||||||||  |||||||||||||||||||  ||||||| |||||||||||||| || |||||| ||||| |||||||    
T  33821714 tatagatggtcattgattgctgcaaggcttcctagtagaacggctaatgatgtgaaaaactattggaacacacatttgcg 33821635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 221 - 360
Target Start/End: Complemental strand, 33821943 - 33821804
Alignment:
Q  221 caggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgatat 320  Q
    |||| |||||||| ||||| ||||||||||||||||||||| | ||||||||||||||    || |||||||||||  |  |||| ||||||  ||||||    
T  33821943 caggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttaaaccctaatattaacagagaaagcattaccgaagatgaagctgatat 33821844  T
Q  321 gattctaaggttacacaaacttctagggaacaagtaagct 360  Q
    |||  ||||||||||||| || || ||||| | |||||||    
T  33821843 gatcataaggttacacaatctcctggggaataggtaagct 33821804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 33750277 - 33750176
Alignment:
Q  38 gagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcctaaacgaacaggt 137  Q
    ||||||| || | ||||||| ||||||||| ||  ||||||| ||||  ||  ||||||||||||||||||||||||||||| |||||||| || |||||    
T  33750277 gagaaaacgtacgtggacatctgaggaagacaagttactcaaagcttatattaacaagtatggtgaaggaaaatggcatttaattcctaaaagagcaggt 33750178  T
Q  138 at 139  Q
    ||    
T  33750177 at 33750176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 33748856 - 33748786
Alignment:
Q  440 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacac 510  Q
    ||||||||| || ||||||||||||| ||||  ||||||||||||||||||||||| || |||||| ||||    
T  33748856 tatagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaaaaactattggaacac 33748786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 33834976 - 33834906
Alignment:
Q  440 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacac 510  Q
    ||||||||| || ||||||||||||| ||||  ||||||||||||||||||||||| || |||||| ||||    
T  33834976 tatagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaaaaactattggaacac 33834906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 149352 - 149251
Alignment:
Q  37 tgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcctaaacgaacagg 136  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||||||||  |||||||||| |||||||||||||||||||||||| || || ||||    
T  149352 tgagaaaaggtgcctggacatacgaggaagataagctactcaaggcttgcattgacaagtatggggaaggaaaatggcatttagttcctcaaagagcagg 149253  T
Q  137 ta 138  Q
    ||    
T  149252 ta 149251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 226 - 350
Target Start/End: Complemental strand, 149131 - 149007
Alignment:
Q  226 ttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgatatgattc 325  Q
    ||||||||||| || ||||| ||||||||||||||||| |||||||||| ||||   ||||| || ||||| || || ||||||||| | |||||||| |    
T  149131 ttgaataggtgccgcaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagtcgatatgatcc 149032  T
Q  326 taaggttacacaaacttctagggaa 350  Q
    |||||||||||||||||||||||||    
T  149031 taaggttacacaaacttctagggaa 149007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 442 - 511
Target Start/End: Complemental strand, 148859 - 148790
Alignment:
Q  442 tagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacaca 511  Q
    |||||||||  ||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||    
T  148859 tagatggtcattgattgctggaaggcttccgggaagaacagctaatgatgtaaagaactattggcacaca 148790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 440 - 517
Target Start/End: Complemental strand, 21305952 - 21305875
Alignment:
Q  440 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttg 517  Q
    |||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21305952 tatagatggtcattgattgctggaaggcttccgggtagaacagctaatgatgtgaagaactattggcacacaaatttg 21305875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 21306422 - 21306328
Alignment:
Q  31 gaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcct 125  Q
    ||||| |||||||||| |||||||| ||  |||||||| | |||||||||||||||||  ||| ||| ||||||||||||||| |||||||||||    
T  21306422 gaggtgtgagaaaaggcgcatggacttacaaggaagatgagctactcaaggcttgcattaacacgtacggtgaaggaaaatggaatttagttcct 21306328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 347
Target Start/End: Complemental strand, 21306178 - 21306051
Alignment:
Q  220 acaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgata 319  Q
    ||||| |||||||| ||  | ||||||||||||||||||||||| ||||| |||| ||||   |||||||||| ||| ||  | |||||||||   |||     
T  21306178 acaggattgaatagatgcagaaaaagttgtagattgaggtggttaaattacttaagccccaacatcaacagaggaagattttctgaggatgaagaagatt 21306079  T
Q  320 tgattctaaggttacacaaacttctagg 347  Q
    |||| ||||||||||||||||| |||||    
T  21306078 tgatcctaaggttacacaaactactagg 21306051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 341
Target Start/End: Original strand, 5470127 - 5470249
Alignment:
Q  219 tacaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgat 318  Q
    |||||| |||||||| ||||| ||||||||||||||||||||| | ||||||||||| |||   ||||| ||| |||| ||  | ||||||||| |||||    
T  5470127 tacaggattgaatagatgtcgaaaaagttgtagattgaggtggataaattatttaaagcccaacatcaatagaaaaagcttttctgaggatgaagttgat 5470226  T
Q  319 atgattctaaggttacacaaact 341  Q
    ||||| |||||||||||||||||    
T  5470227 atgatcctaaggttacacaaact 5470249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 5468533 - 5468617
Alignment:
Q  41 aaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcct 125  Q
    |||||||||||||||||| |||||||| ||  |||||||||||| |||  ||||||||||||||||||||||||||||| |||||    
T  5468533 aaaaggtgcatggacatacgaggaagacaacttactcaaggcttacattaacaagtatggtgaaggaaaatggcatttaattcct 5468617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 442 - 511
Target Start/End: Original strand, 5471194 - 5471263
Alignment:
Q  442 tagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacaca 511  Q
    |||||||||  ||||||||| |||||||||||||||||||||||||  |||||| || |||||| |||||    
T  5471194 tagatggtcattgattgctggaaggcttccgggtagaacagctaatagtgtgaaaaactattggaacaca 5471263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 220 - 341
Target Start/End: Original strand, 90070 - 90191
Alignment:
Q  220 acaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgata 319  Q
    ||||| || ||||||||||| |||||||||||||| |||||||| || |||||||||||  | ||||||| |||||| ||  | ||||||||| ||||||    
T  90070 acaggattaaataggtgtcgaaaaagttgtagattaaggtggtttaactatttaaacccaaccatcaacaaagaaagattttctgaggatgaagttgata 90169  T
Q  320 tgattctaaggttacacaaact 341  Q
    |||| ||||||||||| |||||    
T  90170 tgatcctaaggttacaaaaact 90191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 517
Target Start/End: Original strand, 114205 - 114282
Alignment:
Q  440 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttg 517  Q
    |||||||||||  ||||||| | ||||||||||| |||||||||||||||||| || || |||||||||||| |||||    
T  114205 tatagatggtcattgattgcgggaaggcttccggctagaacagctaatgatgtcaaaaactattggcacacacatttg 114282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 88893 - 88977
Alignment:
Q  41 aaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcct 125  Q
    ||||||| | |||||  |||| ||||||||  |||||||||| |||||  ||||||||||| |||||||||||||| ||||||||    
T  88893 aaaaggtacctggacgaatgaagaagataacttactcaaggcatgcattaacaagtatggtcaaggaaaatggcatctagttcct 88977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 220 - 360
Target Start/End: Original strand, 21873 - 22013
Alignment:
Q  220 acaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgata 319  Q
    ||||| |||||||| ||||| ||||||||||||||||||||| | ||||||||||| |||   |||||||| || | |||  |  |||||||| |||||     
T  21873 acaggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttaaatccctacatcaacagggagaatttttctaaggatgaagttgatt 21972  T
Q  320 tgattctaaggttacacaaacttctagggaacaagtaagct 360  Q
    ||||||||||||||||||| |||||||| || | |||||||    
T  21973 tgattctaaggttacacaaccttctaggcaataggtaagct 22013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 19852 - 19952
Alignment:
Q  39 agaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcctaaacgaacaggta 138  Q
    ||||||||||||||||||||||| ||||| ||    |||||||||| ||| | |||| |||||| |||||||||||||||| ||||| || |||||||||    
T  19852 agaaaaggtgcatggacatatgaagaagacaactgtctcaaggcttacattctcaagcatggtgtaggaaaatggcatttaattcctgaaagaacaggta 19951  T
Q  139 t 139  Q
    |    
T  19952 t 19952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 505
Target Start/End: Original strand, 22155 - 22217
Alignment:
Q  443 agatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattgg 505  Q
    ||||||||  ||||||||| ||||||||| ||||||||||||||||||||||| || ||||||    
T  22155 agatggtcattgattgctggaaggcttccaggtagaacagctaatgatgtgaaaaactattgg 22217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 23300 - 23400
Alignment:
Q  39 agaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcctaaacgaacaggta 138  Q
    ||||||||||||||||||||||| ||||| ||    |||||||||| ||| | |||| |||||| |||||||||||||||| ||||| || |||||||||    
T  23300 agaaaaggtgcatggacatatgaagaagacaactgtctcaaggcttacattctcaagcatggtgtaggaaaatggcatttaattcctgaaagaacaggta 23399  T
Q  139 t 139  Q
    |    
T  23400 t 23400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 24288 - 24346
Alignment:
Q  220 acaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccc 278  Q
    ||||| |||||||||||||| |||||||||||||| || ||| | ||||||||||||||    
T  24288 acaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaaccc 24346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 25216 - 25286
Alignment:
Q  440 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacac 510  Q
    ||||||||| |  ||||||||||||| |||| ||||||| |||||||||||||||| || |||||| ||||    
T  25216 tatagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacac 25286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 9870 - 9908
Alignment:
Q  232 aggtgtcggaaaagttgtagattgaggtggttgaattat 270  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  9870 aggtgtgggaagagttgtagattgaggtggttgaattat 9908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 237215 - 237173
Alignment:
Q  232 aggtgtcggaaaagttgtagattgaggtggttgaattatttaa 274  Q
    |||||| |||| |||||||||||||||||| ||||||||||||    
T  237215 aggtgtgggaagagttgtagattgaggtggctgaattatttaa 237173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University