View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8942_low_4 (Length: 496)
Name: NF8942_low_4
Description: NF8942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8942_low_4 |
 | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0402 (1 HSPs) |
| | |
|
| [»] scaffold0596 (2 HSPs) |
| | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
| [»] scaffold0323 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 470; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 11543219 - 11543699
Alignment:
| Q |
1 |
atcaaaggaagagagttcttttggggggagcagacgacacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11543219 |
atcaaaggaagagagttcttttggggggagcagacgacacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaa-attca |
11543317 |
T |
|
| Q |
101 |
agtcttggagcaagaattttcctttcttttaggttatttcttattcttaatttcatgaattctatctctattttagtgttgtttttgattatggataggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11543318 |
agtcttggagcaagaattttcctttcttttaggttatttcttattcttaatttcatgaattctatctctattttagtgttgtttttgattatggataggt |
11543417 |
T |
|
| Q |
201 |
gaatatttctctagggtcttaggtgaatcttgtatgttgagataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11543418 |
gaatatttctctagggtcttaggtgaatcttgtatgttgagataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaattt |
11543517 |
T |
|
| Q |
301 |
gttctattgatttaatcacatgattaggaatgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaattggtggacct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11543518 |
gttctattgatttaatcacatgattaggaatgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaattggtggacct |
11543617 |
T |
|
| Q |
401 |
atagaacaattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaatctttttgttctttatg |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11543618 |
atagaacaattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaacctttttgttctttatg |
11543699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 43 - 471
Target Start/End: Complemental strand, 21432610 - 21432181
Alignment:
| Q |
43 |
tacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttc-ctttcttttaggttatttct |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21432610 |
tacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttttctttcttttaggttatttct |
21432511 |
T |
|
| Q |
142 |
tattcttaatttcatgaattctatctctattttagtgttgtttttgattatggataggtgaatatttctctagggtcttaggtgaatcttgtatgttgag |
241 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21432510 |
tgttcttaatttcatgaattctatctctattttagtgttgtttttgatcatggatagctgaatatttctctagggtcttaggtgaatcttgtatgttgag |
21432411 |
T |
|
| Q |
242 |
ataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgattaggaatgaccaaacct |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21432410 |
ataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttgtattgatttaatcacatgattaggaatgatcaaacct |
21432311 |
T |
|
| Q |
342 |
ttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaattggtggacctatagaacaattgagactagaattattgcatgatcaaacctt |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
21432310 |
ttgcatgttaacaatcagttaattgatcagcgatcgtactgcaattaattggtggacctatagaacaattgagattagaattattgcatgatcaaatctt |
21432211 |
T |
|
| Q |
442 |
aattttagtcttccaatcattcaatctttt |
471 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| |
|
|
| T |
21432210 |
aattgtagtcttccaatcattcaacctttt |
21432181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 127 - 472
Target Start/End: Complemental strand, 16139793 - 16139453
Alignment:
| Q |
127 |
ttttaggttatttcttattcttaatttcatgaattctatctctattttagtgttgtttttgattatggataggtgaatatttctctagggtcttaggtga |
226 |
Q |
| |
|
|||| |||||||||||| ||| |||||||||||| |||| || ||||||| ||| || || || |||||| | ||| || |||||||| ||||||| |
|
|
| T |
16139793 |
tttttggttatttcttactct-aatttcatgaatcctatttcaattttagcgttcttgttcat---ggatagctaaattattgtctagggt-ttaggtgg |
16139699 |
T |
|
| Q |
227 |
atcttgtatgttgagataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgatta |
326 |
Q |
| |
|
|||||| | ||| ||| || |||| ||||||||||||||||||| |||||| ||| |||| ||||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
16139698 |
atcttgcaagttaagagactttgtaatgttctagtttattaatttgaatttcagtttttatttcaatcaagtttgttctattaattttatcacatgatta |
16139599 |
T |
|
| Q |
327 |
ggaatgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaattggtggacctatagaacaattgagactagaattatt |
426 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
16139598 |
ggaatgatcaaacctttgcatgttaaaaatcagttaattgatcagcgatcgtactgcagttaattggtagacctataggacaattgagactagcattatt |
16139499 |
T |
|
| Q |
427 |
gcatgatcaaaccttaattttagtcttccaatcattcaatcttttt |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16139498 |
gcatgatcaaaccttaattttagtcttccaatcattcaaccttttt |
16139453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 132 - 482
Target Start/End: Original strand, 10127108 - 10127452
Alignment:
| Q |
132 |
ggttatttcttattcttaatttcatgaattctatctctattttagtgttgtttttgattatggataggtgaatatttctctagggtcttaggtgaatctt |
231 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||| ||| | ||||||| |||||||| |||| || ||||| |
|
|
| T |
10127108 |
ggttatttcttactcttaatttcatgaattctatctctattttagtgttcttcttgattatgggtagctaaatatttttctagggt-ttagatggatctt |
10127206 |
T |
|
| Q |
232 |
gtatgttgagataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgattaggaat |
331 |
Q |
| |
|
| | ||| ||| || |||| |||||||||||| |||||| |||||| ||| ||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10127207 |
gcaagttaagagactttgtaatgttctagttt-ttaatttgaatttcagtttttattctaatcaaatttgttctattgattt-----tatgattaggaat |
10127300 |
T |
|
| Q |
332 |
gaccaaacctttgcatgttaacaatc-agttaattgatcagcgatcgtactgcagttaattggtggacctatagaacaattgagactagaattattgcat |
430 |
Q |
| |
|
|| |||||||| |||| || |||| | ||||||||||| | ||| |||| || ||| ||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
10127301 |
gataaaaccttttcatgacaataatcaacttaattgatcaactatcatactacaattagttggtggacctataggacaattgagactagaatttttgcat |
10127400 |
T |
|
| Q |
431 |
gatcaaaccttaattttagtcttccaatcattcaatctttttgttctttatg |
482 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
10127401 |
gatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatg |
10127452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 27 - 471
Target Start/End: Complemental strand, 22406675 - 22406231
Alignment:
| Q |
27 |
ggagcagacgacacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttc |
126 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22406675 |
ggaggagacgacacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttc |
22406576 |
T |
|
| Q |
127 |
ttttaggttatttcttattcttaatttcatgaattctatctctattttagtgttgtttttgattatggataggtgaatatttctctagggtcttaggtga |
226 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22406575 |
ttttaggttatttcttgttcttaatttcatgaattctatctctattttagtgttgtttttgattatggatagctgaatatttctctagggtcttaggtga |
22406476 |
T |
|
| Q |
227 |
atcttgtatgttgagataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgatta |
326 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22406475 |
atcttgtatgatgagataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgatta |
22406376 |
T |
|
| Q |
327 |
ggaatgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaattggtggacctatagaacaattgagactagaattatt |
426 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22406375 |
ggaatgatcaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcaattaattggtggacctatagaacaattgagactagaattatt |
22406276 |
T |
|
| Q |
427 |
gcatgatcaaaccttaattttagtcttccaatcattcaatctttt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22406275 |
gcatgatcaaaccttaattttagtcttccaatcattcaacctttt |
22406231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 10889716 - 10890203
Alignment:
| Q |
1 |
atcaaaggaagagagttctttt---ggggggagcagac----gacacactacacagacactacatgcaacaaagagaagagctttggggatagaaattga |
93 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10889716 |
atcaaaggaagaaagttctttttttggggggagcagactcacgacacactacacagacactacatgcaacaaagagaagagctttggagatagaaattga |
10889815 |
T |
|
| Q |
94 |
agattcaagtcttggagcaagaattttcctttcttttaggttatttcttattcttaatttcatgaattctatctctattttagtgttgtttttgattatg |
193 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10889816 |
agattcgagtcttggagcaagaattttcctttcttttaggttatttcttgttcttaatttcatgaattctatctctattttagtgttgtttttgattatg |
10889915 |
T |
|
| Q |
194 |
gataggtgaatatttctctagggtcttaggtgaatcttgtatgttgagataccttgtcatgttctagtttattaattataatttctatttctattccaat |
293 |
Q |
| |
|
||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10889916 |
gatagctaaattagtctctagggtcttaggtgaatcttgtatgttgagataccttgtcatgttctagtttattaattataatttctatttctattccaat |
10890015 |
T |
|
| Q |
294 |
caaatttgttctattgatttaatcacatgattaggaatgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaattgg |
393 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10890016 |
taaa-ttgttctattgattttatcacatgattaggaatgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcaattaattgg |
10890114 |
T |
|
| Q |
394 |
tggacctatagaacaattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaatctttttgttctttatg |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10890115 |
tggacctatagaacaattgagactagaattattgcatgatcaaaccttagttttagtcttccaatcattcaacctttttgttctttatg |
10890203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 66 - 482
Target Start/End: Complemental strand, 23165216 - 23164798
Alignment:
| Q |
66 |
agagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttcttttaggttatttcttattcttaatttcatgaattctat |
165 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23165216 |
agagaagagttttggg-atagaaattgaagattcaagtcttggagcaagaattttcctttcttttaggttatttcttgttcttaatttcatgaattctat |
23165118 |
T |
|
| Q |
166 |
ctctattttagtgttgtttttgattatggataggtgaatatttctctagggtcttaggtgaatcttgtatgttgagataccttgtcat---gttctagtt |
262 |
Q |
| |
|
||||||||||||||||||||| |||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
23165117 |
ctctattttagtgttgttttttattatggacaactgaatatttctctagggtcttacgtgaatcttgtatgttgagataccttatcatcatgttctagtt |
23165018 |
T |
|
| Q |
263 |
tattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgattaggaatgaccaaacctttgcatgttaacaatcagtta |
362 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23165017 |
tattaattatgatttctatttctattccaatcaaatttgttctattgatttaatcacatgattaggaatgattaaacctttgcatgttaacaatcagtta |
23164918 |
T |
|
| Q |
363 |
attgatcagcgatcgtactgcagttaattggtggacctatagaacaattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcatt |
462 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23164917 |
attaatcagcgatcgtactgcaattaattggtggacctatagaacaattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcatt |
23164818 |
T |
|
| Q |
463 |
caatctttttgttctttatg |
482 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
23164817 |
caacctttttgttctttatg |
23164798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 66 - 482
Target Start/End: Complemental strand, 23576473 - 23576055
Alignment:
| Q |
66 |
agagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttcttttaggttatttcttattcttaatttcatgaattctat |
165 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23576473 |
agagaagagttttggg-atagaaattgaagattcaagtcttggagcaagaattttcctttcttttaggttatttcttgttcttaatttcatgaattctat |
23576375 |
T |
|
| Q |
166 |
ctctattttagtgttgtttttgattatggataggtgaatatttctctagggtcttaggtgaatcttgtatgttgagataccttgtcat---gttctagtt |
262 |
Q |
| |
|
||||||||||||||||||||| |||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
23576374 |
ctctattttagtgttgttttttattatggacaactgaatatttctctagggtcttacgtgaatcttgtatgttgagataccttatcatcatgttctagtt |
23576275 |
T |
|
| Q |
263 |
tattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgattaggaatgaccaaacctttgcatgttaacaatcagtta |
362 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23576274 |
tattaattatgatttctatttctattccaatcaaatttgttctattgatttaatcacatgattaggaatgattaaacctttgcatgttaacaatcagtta |
23576175 |
T |
|
| Q |
363 |
attgatcagcgatcgtactgcagttaattggtggacctatagaacaattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcatt |
462 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23576174 |
attaatcagcgatcgtactgcaattaattggtggacctatagaacaattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcatt |
23576075 |
T |
|
| Q |
463 |
caatctttttgttctttatg |
482 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
23576074 |
caacctttttgttctttatg |
23576055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 127 - 471
Target Start/End: Original strand, 27611347 - 27611685
Alignment:
| Q |
127 |
ttttaggttatttcttattcttaatttcatgaattctatctctattttagtgttgtttttgattatggataggtgaatatttctctagggtcttaggtga |
226 |
Q |
| |
|
|||| |||||| ||||| ||| |||||||||||| |||| || ||||||||||| || || || |||||| | ||| || |||||||| ||||||| |
|
|
| T |
27611347 |
ttttgggttatctcttactct-aatttcatgaatcctatttcaattttagtgttcttgttcat---ggatagctaaatcattttctagggt-ttaggtgg |
27611441 |
T |
|
| Q |
227 |
atcttgtatgttgagataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgatta |
326 |
Q |
| |
|
|||||| | ||| ||| ||||||| || |||||||| ||||||| |||||| ||| |||||||||||| |||||||||||||||| || ||||||||| |
|
|
| T |
27611442 |
atcttgcaagtttagagaccttgtaatattctagtt-attaatttgaatttcagtttttattccaatcaagtttgttctattgattttattacatgatta |
27611540 |
T |
|
| Q |
327 |
ggaatgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaattggtggacctatagaacaattgagactagaattatt |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27611541 |
ggaatgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaattggtggacctataggacaattgagactagaattatt |
27611640 |
T |
|
| Q |
427 |
gcatgatcaaaccttaattttagtcttccaatcattcaatctttt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27611641 |
gcatgatcaaaccttaattttagtcttccaatcattcaacctttt |
27611685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 415 - 482
Target Start/End: Complemental strand, 11767589 - 11767522
Alignment:
| Q |
415 |
actagaattattgcatgatcaaaccttaattttagtcttccaatcattcaatctttttgttctttatg |
482 |
Q |
| |
|
||||| ||| |||||| | |||||||||||||||||||||||| ||||||| |||||| | ||||||| |
|
|
| T |
11767589 |
actaggatttttgcataaccaaaccttaattttagtcttccaaacattcaaactttttatactttatg |
11767522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 119224 - 119711
Alignment:
| Q |
1 |
atcaaaggaagagagttctttt---ggggggagcagac----gacacactacacagacactacatgcaacaaagagaagagctttggggatagaaattga |
93 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
119224 |
atcaaaggaagaaagttctttttttggggggagcagactcacgacacactacacagacactacatgcaacaaagagaagagctttggagatagaaattga |
119323 |
T |
|
| Q |
94 |
agattcaagtcttggagcaagaattttcctttcttttaggttatttcttattcttaatttcatgaattctatctctattttagtgttgtttttgattatg |
193 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
119324 |
agattcgagtcttggagcaagaattttcctttcttttaggttatttcttgttcttaatttcatgaattctatctctattttagtgttgtttttgattatg |
119423 |
T |
|
| Q |
194 |
gataggtgaatatttctctagggtcttaggtgaatcttgtatgttgagataccttgtcatgttctagtttattaattataatttctatttctattccaat |
293 |
Q |
| |
|
||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
119424 |
gatagctaaattagtctctagggtcttaggtgaatcttgtatgttgagataccttgtcatgttctagtttattaattataatttctatttctattccaat |
119523 |
T |
|
| Q |
294 |
caaatttgttctattgatttaatcacatgattaggaatgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaattgg |
393 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
119524 |
taaa-ttgttctattgattttatcacatgattaggaatgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcaattaattgg |
119622 |
T |
|
| Q |
394 |
tggacctatagaacaattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaatctttttgttctttatg |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
119623 |
tggacctatagaacaattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaacctttttgttctttatg |
119711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 37 - 471
Target Start/End: Complemental strand, 8420 - 7986
Alignment:
| Q |
37 |
acacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttcttttaggtta |
136 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8420 |
acacattacacagacactacatgcaacaaagagaacagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttcttttaggtta |
8321 |
T |
|
| Q |
137 |
tttcttattcttaatttcatgaattctatctctattttagtgttgtttttgattatggataggtgaatatttctctagggtcttaggtgaatcttgtatg |
236 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8320 |
tttcttgttcttaatttcatgaattctatctatattttaatgttgtttttgattatggatagctgaatatttatctagggtcttaggtgaatcttgtatg |
8221 |
T |
|
| Q |
237 |
ttgagataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgattaggaatgacca |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8220 |
ttgagataccttgtcatgttctagtttattaattatagtttctatttctattccaatcaaatttgttctattgatttaatcacatgattaggaatgatca |
8121 |
T |
|
| Q |
337 |
aacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaattggtggacctatagaacaattgagactagaattattgcatgatcaa |
436 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8120 |
aacctttgcatgttaacaatcaattaattgatcagcgatcgtaccgcaattaattggtggacctatagaacaattgagactagaattattgcatgatcaa |
8021 |
T |
|
| Q |
437 |
accttaattttagtcttccaatcattcaatctttt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8020 |
accttaattttagtcttccaatcattcaacctttt |
7986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 37 - 366
Target Start/End: Complemental strand, 4546 - 4217
Alignment:
| Q |
37 |
acacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttcttttaggtta |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4546 |
acacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttcttttaggtta |
4447 |
T |
|
| Q |
137 |
tttcttattcttaatttcatgaattctatctctattttagtgttgtttttgattatggataggtgaatatttctctagggtcttaggtgaatcttgtatg |
236 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4446 |
tttcttgttcttaatttcatgaattctatctctattttagtgttgtttttgattatggatagctgaatatttctctacggtcttaggtgaatcttgtatg |
4347 |
T |
|
| Q |
237 |
ttgagataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgattaggaatgacca |
336 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4346 |
ttgagataccttgtcatgttttagtttattaattataatttctatttccattccaatcaaatttgttctattgatttaatcacatgattaggaatgatca |
4247 |
T |
|
| Q |
337 |
aacctttgcatgttaacaatcagttaattg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4246 |
aacctttgcatgttaacaatcagttaattg |
4217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 383 - 482
Target Start/End: Complemental strand, 4226 - 4127
Alignment:
| Q |
383 |
cagttaattggtggacctatagaacaattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaatctttttgttctttatg |
482 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
4226 |
cagttaattggcggacctatagaacaattgagactagaattattgcatgatcaaaccttaattttaatcttccaatcattcaacctttttgttctttatg |
4127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 37 - 471
Target Start/End: Complemental strand, 14277393 - 14276953
Alignment:
| Q |
37 |
acacactacacagacactacatgcaacaaagagaagagctttgg-----ggatagaaattgaagattcaagtcttggagcaagaattttcc-tttctttt |
130 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
14277393 |
acacattacagagacactacatgcaacaaagagaagagctttggtttggggataggaattgaagattcaagtcttggagcaaaaatttcccctttctttt |
14277294 |
T |
|
| Q |
131 |
aggttatttcttattcttaatttcatgaattctatctctattttagtgttgtttttgattatggataggtgaatatttctctagggtcttaggtgaatct |
230 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
14277293 |
aggttatttcttgttcttaatttcatgaattctatctctattttagtgttgtttttgattatggataactgaatattcctctagggtcttaggtggatct |
14277194 |
T |
|
| Q |
231 |
tgtatgttgagataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgattaggaa |
330 |
Q |
| |
|
|| | ||| ||| ||||||| ||||||||||||||||||| |||||| ||| |||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
14277193 |
tgcaagtttagagaccttgtaatgttctagtttattaatttgaatttcagtttttattccaatcaagtttgttctattgattttatcacatgattaggaa |
14277094 |
T |
|
| Q |
331 |
tgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaattggtggacctatagaacaattgagactagaattattgcat |
430 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
14277093 |
tgatcaaacctttgcatgttaacaatcaattaattgatcagcgatcgtactgcagttaattggtggacctataggacaattgagactacaattattgcat |
14276994 |
T |
|
| Q |
431 |
gatcaaaccttaattttagtcttccaatcattcaatctttt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14276993 |
gatcaaaccttaattttagtcttccaatcattcaacctttt |
14276953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 147 - 445
Target Start/End: Original strand, 1685904 - 1686201
Alignment:
| Q |
147 |
ttaatttcatgaattctatctctattttagtgttgtttttgattatggataggtgaatatttctctagggtcttaggtgaatcttgtatgttgagatacc |
246 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||| || ||||| || ||||| | |||| || ||||| || ||||||| || ||| | ||| || || |
|
|
| T |
1685904 |
ttaatttcacgaattctatttcaattttagtgttcttcttgatcattgatagctaaatacttttctagagt-ttaggtggatattgcaagttaagcgact |
1686002 |
T |
|
| Q |
247 |
ttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgattaggaatgaccaaacctttgca |
346 |
Q |
| |
|
|||| |||||||| ||| | | ||| |||||| ||| |||||||||||| |||||||||||||||| |||||||||||| |||||| ||||||||| | |
|
|
| T |
1686003 |
ttgtaatgttctaatttctaattta-aatttcagtttttattccaatcaagtttgttctattgattttatcacatgattaagaatgattaaacctttgaa |
1686101 |
T |
|
| Q |
347 |
tgttaacaatcagtt-aattgatcagcgatcgtactgcagttaattggtggacctatagaacaattgagactagaattattgcatgatcaaaccttaatt |
445 |
Q |
| |
|
||| || ||||| || |||||||| | ||||||||||| ||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1686102 |
tgtcaataatcaatttaattgatcttcaatcgtactgcaattagttgatggacctataagacagttgagactagaattattgcatgatcaaaccttaatt |
1686201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 219 - 482
Target Start/End: Original strand, 45279292 - 45279535
Alignment:
| Q |
219 |
ttaggtgaatcttgtatgttgagataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattgatttaatca |
318 |
Q |
| |
|
||||| |||||||||||||| ||| |||| | |||||||||||||||||| |||| | ||| ||||| ||||||||||||| ||||||||| |||| |
|
|
| T |
45279292 |
ttaggagaatcttgtatgttcagagacctcattatgttctagtttattaatgtgaattccactttttattcaaatcaaatttgttatattgattttatca |
45279391 |
T |
|
| Q |
319 |
catgattaggaatgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaattggtggacctatagaacaattgagacta |
418 |
Q |
| |
|
||| |||| |||||| |||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||| || |
|
|
| T |
45279392 |
cattattaagaatgatcaaatctttgcatgttaacaatcagttaattgatcaacgatcatactgcagtt--------------------aattgagatta |
45279471 |
T |
|
| Q |
419 |
gaattattgcatgatcaaaccttaattttagtcttccaatcattcaatctttttgttctttatg |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||||| |
|
|
| T |
45279472 |
gaattattgcatgatcaaaccttaattttagtctttcagtcattcaacctttttgtgctttatg |
45279535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 362 - 471
Target Start/End: Complemental strand, 37470713 - 37470604
Alignment:
| Q |
362 |
aattgatcagcgatcgtactgcagttaattggtggacctatagaacaattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcat |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| | |
|
|
| T |
37470713 |
aattgatcagcgatcgtactgcagttaattgatggacctataggacaactgagactagaattattgcatgatcaaaccttgattttagtcgtccaatcgt |
37470614 |
T |
|
| Q |
462 |
tcaatctttt |
471 |
Q |
| |
|
|||| ||||| |
|
|
| T |
37470613 |
tcaacctttt |
37470604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 247 - 331
Target Start/End: Complemental strand, 37470795 - 37470711
Alignment:
| Q |
247 |
ttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgattaggaat |
331 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||| |||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
37470795 |
ttgtaatgttctagtttattaatttgaatttcagtttttattccaatcaaatttattctattgattttatcacatgattaggaat |
37470711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 148 - 482
Target Start/End: Original strand, 31962041 - 31962371
Alignment:
| Q |
148 |
taatttcatgaattctatctctattttagtgttgtttttgattatggataggtgaatatttctctagggtcttaggtgaatcttgtatgttgagatacct |
247 |
Q |
| |
|
|||||||||||||| ||| || ||||||||||| || |||||||||||| | | | || |||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
31962041 |
taatttcatgaattttatttcaattttagtgttctt---gattatggatagctaagttattttctagggt-ttaggtgaatcttgtatgttgagagacct |
31962136 |
T |
|
| Q |
248 |
tgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgattaggaatgaccaaacctttgcat |
347 |
Q |
| |
|
| |||||||||||||||||||| |||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
31962137 |
tatcatgttctagtttattaatgtgaatttcagtttttattcaaatcaaatttgttctattgattttatcacatgattaggaatgatcaaacctttgcat |
31962236 |
T |
|
| Q |
348 |
gttaacaatcagttaattgatcagcgatcgtactgcagttaattggtggacctatagaacaattgagactagaattattgcatgatcaaaccttaatttt |
447 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31962237 |
gttaacaatcagttaattgatcagcgaccgtactgcagttaattggtggacctataggacaattgagactagaattattgcatgatcaaaccttaatttt |
31962336 |
T |
|
| Q |
448 |
agtcttccaatcattcaatctttttgttctttatg |
482 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
31962337 |
agtcttccagtcattcaacctttttgtgctttatg |
31962371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 290 - 472
Target Start/End: Original strand, 23616229 - 23616411
Alignment:
| Q |
290 |
caatcaaatttgttctattgatttaatcacatgattaggaatgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaa |
389 |
Q |
| |
|
||||||| || ||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||| ||| | |||||| |
|
|
| T |
23616229 |
caatcaagttggttctattgattttatcacatgattaggaatgatcaaatctttgcatgttaacaataagttaattgattagcgatcatacggtagttaa |
23616328 |
T |
|
| Q |
390 |
ttggtggacctatagaacaattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaatcttttt |
472 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23616329 |
ttggtggacctataggacaatttagactagaattattgcatgatcaaaccttaattttagtcttccaatctttcaatcttttt |
23616411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 315 - 482
Target Start/End: Complemental strand, 10889855 - 10889690
Alignment:
| Q |
315 |
atcacatgattaggaatgaccaaacctttgcatgttaacaatcag-ttaattgatcagcgatcgtactgcagttaattggtggacctatagaacaattga |
413 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||| || ||||| ||||||||||| | ||||||||| | ||| |||||||| ||||| |||||||| |
|
|
| T |
10889855 |
atcatatgattaggaatgatcaaacctt-gcatgccaataatcaacttaattgatcaacaatcgtactgtaattagttggtgga--tataggacaattga |
10889759 |
T |
|
| Q |
414 |
gactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaatctttttgttctttatg |
482 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
10889758 |
gactagaattattgcatgatgaaaccttaattttagtcttccaatcattcaaccttttcgtgctttatg |
10889690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 23616160 - 23616207
Alignment:
| Q |
132 |
ggttatttcttattcttaatttcatgaattctatctctattttagtgt |
179 |
Q |
| |
|
||||||| |||| |||||||||| |||||| ||||||||||||||||| |
|
|
| T |
23616160 |
ggttattacttactcttaatttcgtgaattatatctctattttagtgt |
23616207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 127 - 472
Target Start/End: Original strand, 26115386 - 26115727
Alignment:
| Q |
127 |
ttttaggttatttcttattcttaatttcatgaattctatctctattttagtgttgtttttgattatggataggtgaatatttctctagggtcttaggtga |
226 |
Q |
| |
|
|||| ||||||| |||| ||| ||||| |||||| |||| || ||||||||||| || || ||||||||| | ||| | ||||||||||||||||| |
|
|
| T |
26115386 |
ttttgggttattccttactct-aattttatgaatcctatttcaattttagtgttcttgtt---tatggatagctaaattaatttctagggtcttaggtga |
26115481 |
T |
|
| Q |
227 |
atcttgtatgttgagataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgatta |
326 |
Q |
| |
|
| |||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
26115482 |
aacttgtatgttgagataccttatcatattctagtttattaatttgaatttctatttctatttcaatcaagtttgttctattgattttatcacatgatta |
26115581 |
T |
|
| Q |
327 |
ggaatgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaattggtggacctatagaacaattgagactagaattatt |
426 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
26115582 |
ggaatgatcaaacctttgcatgttaacaatcagttaattaatcagcgatcgtactgcagttaattggtgagcctataggacaattgagactagaattatt |
26115681 |
T |
|
| Q |
427 |
gcatgatcaaaccttaattttagtcttccaatcattcaatcttttt |
472 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
26115682 |
gcaggatcaaaccttaattttagtcctccaatcattcaaccttttt |
26115727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 148 - 486
Target Start/End: Complemental strand, 13813300 - 13812971
Alignment:
| Q |
148 |
taatttcatgaattctatctctattttagtgttgtttttgattatggataggtgaatatttctctagggtcttaggtgaatcttgtatgttgagatacct |
247 |
Q |
| |
|
|||||||||||||| ||| || ||||||||||| || |||||||||||| | | | || |||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
13813300 |
taatttcatgaattttatttcaattttagtgttctt---gattatggatagctaagttattttctagggt-ttaggtgaatcttgtatgttgagagacct |
13813205 |
T |
|
| Q |
248 |
tgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattgatttaatcacatgattaggaatgaccaaacctttgcat |
347 |
Q |
| |
|
| |||||||||||||||||||| |||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
13813204 |
tatcatgttctagtttattaatgtgaatttcagttt-tattcaaatcaaatttgttctattgattttatcacatgattaggaatgatcaaacctttgcat |
13813106 |
T |
|
| Q |
348 |
gttaacaatcagttaattgatcagcgatcgtactgcagttaattggtggacctatagaacaattgagactagaattattgcatgatcaaaccttaatttt |
447 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13813105 |
gttaacaatcagttaattgatcaccg----tactgcagttaattggtggacctataggacaattgagactagaattattacatgatcaaaccttaatttt |
13813010 |
T |
|
| Q |
448 |
agtcttccaatcattcaatctttttgttctttatgatga |
486 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||| |||| |
|
|
| T |
13813009 |
agtcttccagtcattcaacctttttgtgctttataatga |
13812971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 210 - 471
Target Start/End: Original strand, 17342219 - 17342479
Alignment:
| Q |
210 |
tctagggtcttaggtgaatcttgtatgttgagataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattg |
309 |
Q |
| |
|
|||||||| ||||||| |||||| | ||| ||| || |||| ||||||||||||||||||| |||||| ||| |||| |||| || |||||||||||| |
|
|
| T |
17342219 |
tctagggt-ttaggtggatcttgcaagtttagagacattgtaatgttctagtttattaatttgaatttcagtttttatttcaattaagtttgttctattg |
17342317 |
T |
|
| Q |
310 |
atttaatcacatgattaggaatgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaattggtggacctatagaacaa |
409 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| |
|
|
| T |
17342318 |
attttatcacatgattaggaatgatcaaacctttgcatgttaacaatcagttaattgatcagcaatcgtaatgcaattaattggtggacctatagaacaa |
17342417 |
T |
|
| Q |
410 |
ttgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaatctttt |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17342418 |
ttgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaacctttt |
17342479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 298 - 465
Target Start/End: Complemental strand, 7728301 - 7728134
Alignment:
| Q |
298 |
tttgttctattgatttaatcacatgattaggaatgaccaaacctttgcatgttaacaatcag-ttaattgatcagcgatcgtactgcagttaattggtgg |
396 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| || | ||||| || |||||| || ||||| ||||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
7728301 |
tttgttctattgattttatcacgtgattagacataatcaaacatt-gcatgtcaataatcaacttaattgatcagcgatcatactgcaattagttggtgg |
7728203 |
T |
|
| Q |
397 |
acctatagaacaattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaa |
465 |
Q |
| |
|
| |||| | |||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
7728202 |
attcataggaaaattgagagaagaattattgcatgatcaaaccttagttttactcttccaatcattcaa |
7728134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 298 - 397
Target Start/End: Complemental strand, 7728424 - 7728325
Alignment:
| Q |
298 |
tttgttctattgatttaatcacatgattaggaatgaccaaacctttgcatgttaacaatc-agttaattgatcagcgatcgtactgcagttaattggtgg |
396 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| | |||||| |||||||| || |||| | ||||||||||||||||| ||||| | ||| ||||||| |
|
|
| T |
7728424 |
tttgttctattgattttatcacatgattagaaattatcaaacc-ttgcatgtcaataatcaacttaattgatcagcgatcatactgaaattagttggtgg |
7728326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 210 - 471
Target Start/End: Original strand, 21736 - 21996
Alignment:
| Q |
210 |
tctagggtcttaggtgaatcttgtatgttgagataccttgtcatgttctagtttattaattataatttctatttctattccaatcaaatttgttctattg |
309 |
Q |
| |
|
|||||||| ||||||| |||||| | ||| ||| || |||| ||||| ||||||||||||| | |||| ||| |||| |||| || |||||||||||| |
|
|
| T |
21736 |
tctagggt-ttaggtggatcttgcaagtttagagacattgtaatgttttagtttattaatttgattttcagtttttatttcaattaagtttgttctattg |
21834 |
T |
|
| Q |
310 |
atttaatcacatgattaggaatgaccaaacctttgcatgttaacaatcagttaattgatcagcgatcgtactgcagttaattggtggacctatagaacaa |
409 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| |
|
|
| T |
21835 |
attttatcacatgattaggaatgatcaaacctttgcatgttaacaatcagttaattgatcagctatcgtattgcagttaattggtggacctataggacaa |
21934 |
T |
|
| Q |
410 |
ttgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaatctttt |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21935 |
ttgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaacctttt |
21996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0323
Description:
Target: scaffold0323; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 10256 - 10373
Alignment:
| Q |
34 |
acgacacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttcttttagg |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10256 |
acgacacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagtaagaattttcctttcttttagg |
10355 |
T |
|
| Q |
134 |
ttatttcttattcttaat |
151 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
10356 |
ttatttctttttcttaat |
10373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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