View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8942_low_8 (Length: 439)

Name: NF8942_low_8
Description: NF8942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8942_low_8
NF8942_low_8
[»] chr7 (4 HSPs)
chr7 (19-425)||(3659462-3659853)
chr7 (22-272)||(3653201-3653449)
chr7 (112-253)||(3649181-3649322)
chr7 (19-272)||(3657203-3657452)
[»] chr8 (1 HSPs)
chr8 (112-170)||(36164576-36164634)


Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 3659462 - 3659853
Alignment:
Q  19 caatcaaattctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttca 118  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3659462 caatcaaattgtcctagaatccaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaatgacatttcacgtcaaaattttca 3659561  T
Q  119 cgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||    
T  3659562 cgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgc---------------cactat 3659646  T
Q  219 atctccgtcatcgctactacgtgttgatcctccactgtcctccaccagcacttcctcgtcatcttcaacaccctgataagagtccacaacatctacaact 318  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3659647 atctccgtcatcgctactacgtgttgatcctccactgtcccccaccagcacttcctcgtcatcttcaacaccctgagaagagtccacaacatctacaact 3659746  T
Q  319 gcaaactttctattctccaaaacctcgccttggtcatcatttgaggaacttccatctgattcacaagttcttgtgctataaacctcacaaacattaccat 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3659747 gcaaactttctattctccaaaacctcgccttggtcatcatttgaggaacttccatccgattcacaagttcttgtgctataaacctcacaaacattaccat 3659846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 3653201 - 3653449
Alignment:
Q  22 tcaaattctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgc 121  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3653201 tcaaattctcctagaata--atcaaacattacaaatcaaagggtaaacaaaaccttacatgaatataatgtaacgacatttcacgtcaaaagtttcacgc 3653298  T
Q  122 ctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatc 221  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3653299 ctttactcttcaaatcagttctgctttccattttaagcggcagtggagcagagaacagaatcttctcttggtgtgcttgaaactactctttcactatatc 3653398  T
Q  222 tccgtcatcgctactacgtgttgatcctccactgtcctccaccagcacttc 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3653399 tccgtcatcgctactacgtgttgatcctccactgtcctccaccagaacttc 3653449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 112 - 253
Target Start/End: Original strand, 3649181 - 3649322
Alignment:
Q  112 attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctt 211  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||||||||| || | |||| ||||| |||||| || ||| | |||||||| ||||    
T  3649181 attttcacacttttactcttcaaatcagttctgctttccatcttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctt 3649280  T
Q  212 tcactatatctccgtcatcgctactacgtgttgatcctccac 253  Q
    |||||  |||||| | | | |||||||| |||||||||||||    
T  3649281 tcactcaatctccataaccactactacgcgttgatcctccac 3649322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 3657203 - 3657452
Alignment:
Q  19 caatcaaattctcctagaatacaatcaaacattacaaatcaaagggtag---acaaagccttacatgaatataatgtaacgacatttcacgtcaaaattt 115  Q
    ||||||| ||||||||||||||| ||||||||||||||||||| |  |    ||||||||||| ||||   |||| | | |||||||| || |||| | |    
T  3657203 caatcaagttctcctagaatacagtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatga---taattttatgacatttcgcgacaaattgt 3657299  T
Q  116 tcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcac 215  Q
    |||| || ||||||||||| ||     |||| ||||||||||| ||||||| ||| |||||||||| |||||| || ||| | ||||||||||||||||     
T  3657300 tcacaccattactcttcaagtct----tgctctccattttaagcggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctttcag 3657395  T
Q  216 tatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagcacttc 272  Q
    |  |||||| | | | || ||||| ||||||||| ||| ||||||||||||||||||    
T  3657396 tcaatctccataaccactgctacgcgttgatccttcaccgtcctccaccagcacttc 3657452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 36164576 - 36164634
Alignment:
Q  112 attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagc 170  Q
    |||||||| | |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  36164576 attttcacacttttactcttcaaatcagttctgctttccatcttaagcggcaatggagc 36164634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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