View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8942_low_9 (Length: 434)
Name: NF8942_low_9
Description: NF8942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8942_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 32254516 - 32254924
Alignment:
| Q |
18 |
agaaagtttgtatgtttatctctgaattttatatgatttagtcattattattttcaatatataacattcctgaaatcaagcaatttcggaagagttaatt |
117 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32254516 |
agaatgtttgtatgtttatctctgaattttatataatttagtcattattgttttctatatataacattcctgaaatcaagcaatttcggaagatttaatt |
32254615 |
T |
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| Q |
118 |
ggctttgagttttaatttatgnnnnnnnnctttctaatgtgaaatataatgttaacatttttctaacataacatttattcttttccccttagcttgccta |
217 |
Q |
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| T |
32254616 |
gactttgagttttaatttatgtttttttttcttctaatgtgaaatataatgttaacatttttctaacacaacatttattcttttcctcttagcttgccta |
32254715 |
T |
|
| Q |
218 |
aggatggacaacttatgtcccagagtccgttggtctgtacacagtcacaatccagctcacagatccctaccgaagatgaactacttaaatctatcaataa |
317 |
Q |
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| T |
32254716 |
aggatggacaacttatgtcccagagtacgttggtctgtacacagtcacaatccagctcacagatccctaccgaagatgaactacttaaatctatcaataa |
32254815 |
T |
|
| Q |
318 |
ttgtcagcatattaggttcaaaattgagggggaagtctcctatgaattcagcaaagcggcttttgttctttggggccgtgaggtcacacaattgttaggt |
417 |
Q |
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||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| | ||||||||| |
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| T |
32254816 |
ttgtctgcatattgggttcaaaattgaggtagaagtctcctatgaattcagcaaggcgggttttgttctttgggaccgtgaggtcacatagttgttaggt |
32254915 |
T |
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| Q |
418 |
atctctgct |
426 |
Q |
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| T |
32254916 |
atttctgct |
32254924 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 22079740 - 22079692
Alignment:
| Q |
378 |
ttttgttctttggggccgtgaggtcacacaattgttaggtatctctgct |
426 |
Q |
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||||||| |||||| |||||||||||||||| ||||||| || |||||| |
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| T |
22079740 |
ttttgttgtttgggaccgtgaggtcacacaaatgttagggatatctgct |
22079692 |
T |
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