View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8943_high_5 (Length: 277)
Name: NF8943_high_5
Description: NF8943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8943_high_5 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 43009782 - 43009924
Alignment:
| Q |
20 |
ggaagctacttggccagaagaagttatcttctgagagagcaaactgctctgatagatttgaagattgtaattccttttgttaatctatgaaaatcgcaag |
119 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43009782 |
ggaagttacttggccagaagaagttatcttctgagagagcaaactgctctgataggtttgaagattgtaattccttttgttaatctatgaaaatcgcaag |
43009881 |
T |
|
| Q |
120 |
tttacttgcaaaagcctcatctctataattctgatctttatca |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43009882 |
tttacttgcaaaagcctcatctctataattctgatctttatca |
43009924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 43014376 - 43014519
Alignment:
| Q |
20 |
ggaagctacttggccagaagaagttatcttctgagagagcaaactgctctgatagatttgaagattgtaattccttttgttaatctatgaaaatcgcaag |
119 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43014376 |
ggaagttacttgaccagaagaagttatcttctgagagagcaaactgctctgataggtttgaagattgtaattccttttgttaatctatgaaaatcgcaag |
43014475 |
T |
|
| Q |
120 |
tttacttgcaaaagcctcatctctataattctgatctttatcag |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43014476 |
tttacttgcaaaagcctcatctctataattctgatctttatcag |
43014519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 43012079 - 43012221
Alignment:
| Q |
20 |
ggaagctacttggccagaagaagttatcttctgagagagcaaactgctctgatagatttgaagattgtaattccttttgttaatctatgaaaatcgcaag |
119 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43012079 |
ggaagttacttgaccagaagaagttatcttctgagagagcaaactgctctgataggtttgaagattgtaattccttttgttaatctatgaaaatcgcaag |
43012178 |
T |
|
| Q |
120 |
tttacttgcaaaagcctcatctctataattctgatctttatca |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43012179 |
tttacttgcaaaagcctcatctctataattctgatctttatca |
43012221 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 25199922 - 25199786
Alignment:
| Q |
20 |
ggaagctacttggccagaagaagttatcttctgagagagcaaactgctctgatagatttgaagattgtaattccttttgttaatctatgaaaatcgcaag |
119 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| | |||||||||||| |
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|
| T |
25199922 |
ggaagttacttggctagaagaagttatcttctgagagagcaaactgctctgatacatttgcagattgtatttccttttgttaatcaacgaaaatcgcaag |
25199823 |
T |
|
| Q |
120 |
tttacttgcaaaagcctcatctctataattctgatct |
156 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
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|
| T |
25199822 |
tttacttgcaaaagtctcatctctataattctgatct |
25199786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 35073918 - 35074047
Alignment:
| Q |
33 |
ccagaagaagttatcttctgagagagcaaactgctctgatagatttgaagattgtaattccttttgttaatctatgaaaatcgcaagtttacttgcaaaa |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||| |||||||||| ||||||||||||||||||||||||||| |
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|
| T |
35073918 |
ccagaagaagttatcttctgagagagcaaactgctctgatacatttgcagactgtgattccgtttgttaatcaatgaaaatcgcaagtttacttgcaaaa |
35074017 |
T |
|
| Q |
133 |
gcctcatctctataattctgatctttatca |
162 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
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|
| T |
35074018 |
gcctcatctctataattctgatctctatca |
35074047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 25204827 - 25204685
Alignment:
| Q |
20 |
ggaagctacttggccagaagaagttatcttctgagagagcaaactgctctgatagatttgaagattgtaattccttttgttaatctatgaaaatcgcaag |
119 |
Q |
| |
|
||||| || ||||||| |||||||||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||| ||||| |||||||| |
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|
| T |
25204827 |
ggaagttatttggccaaaagaagttatcttctgagagggcaaactgctctgatacatttgcagattgtatttccttttgttaatcaatgaatatcgcaag |
25204728 |
T |
|
| Q |
120 |
tttacttgcaaaagcctcatctctataattctgatctttatca |
162 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
25204727 |
tttacttgcaaaagtctcatctctataattctgatctctatca |
25204685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 25672739 - 25672597
Alignment:
| Q |
20 |
ggaagctacttggccagaagaagttatcttctgagagagcaaactgctctgatagatttgaagattgtaattccttttgttaatctatgaaaatcgcaag |
119 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25672739 |
ggaagttacttggccagaagaagttatcttctgagagagcaaactgctctgataggtttgaagattgtaattccttttgttaatctatgaaaatcgcaag |
25672640 |
T |
|
| Q |
120 |
tttacttgcaaaagcctcatctctataattctgatctttatca |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25672639 |
tttacttgcaaaagcctcatctctataattctgatctttatca |
25672597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 25677586 - 25677444
Alignment:
| Q |
20 |
ggaagctacttggccagaagaagttatcttctgagagagcaaactgctctgatagatttgaagattgtaattccttttgttaatctatgaaaatcgcaag |
119 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25677586 |
ggaagttacttggccagaagaagttatcttctgagagagcaaactgctctgataggtttgaagattgtaattccttttgttaatctatgaaaatcgcaag |
25677487 |
T |
|
| Q |
120 |
tttacttgcaaaagcctcatctctataattctgatctttatca |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25677486 |
tttacttgcaaaagcctcatctctataattctgatctttatca |
25677444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 163 - 270
Target Start/End: Complemental strand, 2012307 - 2012200
Alignment:
| Q |
163 |
gtgcgtgaatgtttatttgggtgaaaccaggaaattcttccaatatcaattttttaagtagagggcaactagatatcaaactatcaaaaggatcttgaga |
262 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||| |||||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||| |
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|
| T |
2012307 |
gtgcgtgaatgtttatttgggtgaaaccgtcaaattctgccaacatcaatttttcaagcagagggcaactagatatcaaactctcaaaagcatcttgaga |
2012208 |
T |
|
| Q |
263 |
catagtaa |
270 |
Q |
| |
|
||||||| |
|
|
| T |
2012207 |
aatagtaa |
2012200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 270
Target Start/End: Complemental strand, 2020110 - 2020003
Alignment:
| Q |
163 |
gtgcgtgaatgtttatttgggtgaaaccaggaaattcttccaatatcaattttttaagtagagggcaactagatatcaaactatcaaaaggatcttgaga |
262 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| |||||||||| ||| ||| |||||||||| |||||||||| | |||||| ||||||||| |
|
|
| T |
2020110 |
gtgcgtgaatgtttatttttgtgaaaccatcaaattcaatcaatatcaatctttcaagcagagggcaaccagatatcaaaatctcaaaatcatcttgaga |
2020011 |
T |
|
| Q |
263 |
catagtaa |
270 |
Q |
| |
|
|||||||| |
|
|
| T |
2020010 |
catagtaa |
2020003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 163 - 265
Target Start/End: Complemental strand, 2006814 - 2006712
Alignment:
| Q |
163 |
gtgcgtgaatgtttatttgggtgaaaccaggaaattcttccaatatcaattttttaagtagagggcaactagatatcaaactatcaaaaggatcttgaga |
262 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| |||| |||| |||| ||| ||||||||||||||||||||| | ||||||| || ||||| |
|
|
| T |
2006814 |
gtgcgtgaatgtttatttgggtgaaaccatcaagttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcatactgaga |
2006715 |
T |
|
| Q |
263 |
cat |
265 |
Q |
| |
|
||| |
|
|
| T |
2006714 |
cat |
2006712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 271
Target Start/End: Complemental strand, 2010897 - 2010789
Alignment:
| Q |
163 |
gtgcgtgaatgtttatttgggtgaaaccaggaaattcttccaatatcaattttttaagtagagggcaactagatatcaaactatcaaaaggatcttgaga |
262 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||| || ||||||||||||| ||| | |||||||| | ||| |||| | ||||||| ||||||||| |
|
|
| T |
2010897 |
gtgcgttaatgtttatttttgtgaaaccctcaaattcatcgaatatcaatttttcaagcaaagggcaaccaaataacaaattctcaaaagcatcttgaga |
2010798 |
T |
|
| Q |
263 |
catagtaaa |
271 |
Q |
| |
|
||||||||| |
|
|
| T |
2010797 |
catagtaaa |
2010789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 15092043 - 15091901
Alignment:
| Q |
20 |
ggaagctacttggccagaagaagttatcttctgagagagcaaactgctctgatagatttgaagattgtaattccttttgttaatctatgaaaatcgcaag |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
15092043 |
ggaagttacttggccagaagaagttatcttctgagagagcaaactgctctgatacatttgcagactgtaattccttttgttaatcaatgaaaatcgcaag |
15091944 |
T |
|
| Q |
120 |
tttacttgcaaaagcctcatctctataattctgatctttatca |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||| ||||| |
|
|
| T |
15091943 |
tttacttgcaaaagcctcatctctataattttgttctctatca |
15091901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 162
Target Start/End: Original strand, 43679412 - 43679553
Alignment:
| Q |
21 |
gaagctacttggccagaagaagttatcttctgagagagcaaactgctctgatagatttgaagattgtaattccttttgttaatctatgaaaatcgcaagt |
120 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
43679412 |
gaagttacttggccagaagaagttatcttctgagagagcaaactactctgatacatttgcagactgtaattcattttgttaatcaatgaaaatcgcaagt |
43679511 |
T |
|
| Q |
121 |
ttacttgcaaaagcctcatctctataattctgatctttatca |
162 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
43679512 |
ttacttgcaaaagcctcatctctataatgctgatctctatca |
43679553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 26304467 - 26304594
Alignment:
| Q |
20 |
ggaagctacttggccagaagaagttatcttctgagagagcaaactgctctgatagatttgaagattgtaattccttttgttaatctatgaaaatcgcaag |
119 |
Q |
| |
|
||||| || |||| |||||||| || |||| ||||| ||||||||||||||||| ||||| | |||||| |||||||||| ||| |||||||||||||| |
|
|
| T |
26304467 |
ggaagttatttggtcagaagaa-ttgtcttttgagaaagcaaactgctctgatacatttgcaaattgtatttccttttgtacatcaatgaaaatcgcaag |
26304565 |
T |
|
| Q |
120 |
tttacttgcaaaagcctcatctctataat |
148 |
Q |
| |
|
|||||||| || |||||| |||||||||| |
|
|
| T |
26304566 |
tttacttgaaatagcctcctctctataat |
26304594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 43678219 - 43678294
Alignment:
| Q |
20 |
ggaagctacttggccagaagaagttatcttctgagagagcaaactgctctgatagatttgaagattgtaattcctt |
95 |
Q |
| |
|
||||| ||||||| |||||| || |||||||||||||||||||||||| ||||| ||||| ||| ||||||||||| |
|
|
| T |
43678219 |
ggaagttacttggtcagaaggagctatcttctgagagagcaaactgctttgatacatttgcagactgtaattcctt |
43678294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 43678831 - 43678868
Alignment:
| Q |
89 |
attccttttgttaatctatgaaaatcgcaagtttactt |
126 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
43678831 |
attccttttgttaatcaatgaaaatcacaagtttactt |
43678868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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