View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8943_low_18 (Length: 235)
Name: NF8943_low_18
Description: NF8943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8943_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 5035736 - 5035935
Alignment:
| Q |
25 |
tttattctgcgggggtgatcggcaaaacctagattcccattaggacgaagaaggttgaatgtgttgttctcctcgtcgttgaggaatttgaaaatgtgtt |
124 |
Q |
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| T |
5035736 |
tttattctgcgggggtgatcggcaaaacctagattcccattaggacgaagaagtttgaatgtgttgttctcctcgtcgttgaggaatttgaagatgtttt |
5035835 |
T |
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| Q |
125 |
cccataaatcctctggtaaatttgaacgtgttgcttctgtttctgttcccatttttcgtttcttagggttttcctctgttgctgctattttctctgcttc |
224 |
Q |
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| T |
5035836 |
cccataaatcctctggtaaatttgaacgtgttgcttctgtttctgttcccatttttcgtttcttagggttttcctctgttgctgctattttctctgcttc |
5035935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 2525894 - 2526003
Alignment:
| Q |
48 |
aaaacctagattcccattaggacgaagaaggttgaatgtgttgttctcctcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaattt |
147 |
Q |
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| T |
2525894 |
aaaacctatattcccatcaagacgaagaaggttgaaggtgttgttgtcctcgtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatat |
2525993 |
T |
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| Q |
148 |
gaacgtgttg |
157 |
Q |
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| T |
2525994 |
gaacgtgttg |
2526003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 2536651 - 2536737
Alignment:
| Q |
71 |
gaagaaggttgaatgtgttgttctcctcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttg |
157 |
Q |
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| T |
2536651 |
gaagaaggctgaaggtgttgctgtcctcgtggttgagaaatttgaagatgtattcccataactcctctggtaaatatgaacgtgttg |
2536737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 2625348 - 2625296
Alignment:
| Q |
99 |
gtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaac |
151 |
Q |
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| T |
2625348 |
gtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatctgaac |
2625296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 2491249 - 2491320
Alignment:
| Q |
86 |
tgttgttctcctcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttg |
157 |
Q |
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| T |
2491249 |
tgttgttgtcctcgtcgttcaggaatttgaggatgtgttcccataacttctctggtaaacatgaacgtgttg |
2491320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 2467679 - 2467738
Alignment:
| Q |
99 |
gtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttgc |
158 |
Q |
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| T |
2467679 |
gtcgttgaggaatttgaagatgcgctcccataactcctttggtaaatatgaacatgttgc |
2467738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 5102005 - 5101944
Alignment:
| Q |
97 |
tcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttgc |
158 |
Q |
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| T |
5102005 |
tcgtcgttgaggaatttgaagatgcgctcccataactcatccggtaaatatgaacctgttgc |
5101944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 2486430 - 2486510
Alignment:
| Q |
100 |
tcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttgcttctgtttctgttcccattttt |
180 |
Q |
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| T |
2486430 |
tcgttgaggaatttaaagattcgctcccataattcctctgggaaatacgagcatgttgcttctgttgctgttgccattttt |
2486510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 2519366 - 2519422
Alignment:
| Q |
95 |
cctcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaac |
151 |
Q |
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| T |
2519366 |
cctcgtcgttgaggaacttgacaatgcgctcccataactcctccggtaaatatgaac |
2519422 |
T |
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