View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8943_low_20 (Length: 229)
Name: NF8943_low_20
Description: NF8943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8943_low_20 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 29090003 - 29090229
Alignment:
| Q |
1 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcatgaattgaagctacacaagaaaatcatcaacttttgccaaatcacgggtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29090003 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcgtgaattgaagctgcacaagaaaatcatcaacttttgccaaatcacgggtc |
29090102 |
T |
|
| Q |
101 |
acacgggagacatgttgggtaaatatgttgacacttatttgagggattggggattgtatggtaagatattaacggtgacagtggataatgccaaggcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
29090103 |
acacgggagacatgttgggtaaatatgttgacacttatttgagggattgggggttgtatggtaagatattaacggtaacggtggataatgccaaggcaaa |
29090202 |
T |
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| Q |
201 |
tgatgtgatgattcgatatttgcataa |
227 |
Q |
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|||||| |||||||||||| ||||||| |
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| T |
29090203 |
tgatgttatgattcgatatctgcataa |
29090229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5933756 - 5933528
Alignment:
| Q |
1 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcatgaattgaagctacacaagaaaatcatcaacttttgccaaatcacgggtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
5933756 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcgtgaattgaagctgcacaagaaaatcatcaacttttgccaaatcataggtc |
5933657 |
T |
|
| Q |
101 |
acacgggagacatgttgggtaaatatgttgacacttatttgagggattggggattgtatggtaagatattaacggtgacagtggataatgccaaggcaaa |
200 |
Q |
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| T |
5933656 |
acatgggagacatgttgggtaaatatgttgacacttatttgagggattggggcttgtatggtaagatattaacggtaacggtggataatgccaaggcaaa |
5933557 |
T |
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| Q |
201 |
tgatgtgatgattcgatatttgcataata |
229 |
Q |
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| T |
5933556 |
tgatgttatgattcgatatctgcataata |
5933528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5935708 - 5935934
Alignment:
| Q |
1 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcatgaattgaagctacacaagaaaatcatcaacttttgccaaatcacgggtc |
100 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
5935708 |
tcaaatcaaaacttaaattacatgagtttcatcgttcattttgttgatcgtgaattgaagctgcacaagaaaatcatcaacttttgccaaatcatgggtc |
5935807 |
T |
|
| Q |
101 |
acacgggagacatgttgggtaaatatgttgacacttatttgagggattggggattgtatggtaagatattaacggtgacagtggataatgccaaggcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || |||||||||||||||||||| |
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| T |
5935808 |
acacgggagacatgttgggtaaatatgttgacacttatttgagggattgggggttgtatggtaagatattaacgataacggtggataatgccaaggcaaa |
5935907 |
T |
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| Q |
201 |
tgatgtgatgattcgatatttgcataa |
227 |
Q |
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|||||| |||||||||||| ||||||| |
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| T |
5935908 |
tgatgttatgattcgatatctgcataa |
5935934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4316753 - 4316536
Alignment:
| Q |
1 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcatgaattgaagctacacaagaaaatcatcaacttttgccaaatcacgggtc |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
4316753 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcgtgaattgaagctgcacaagaaaatcatcaacttttgccaaatcacagg-- |
4316656 |
T |
|
| Q |
101 |
acacgggagacatgttgggtaaatatgttgacacttatttgagggattggggattgtatggtaagatattaacggtgacagtggataatgccaaggcaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
4316655 |
-------agacatgttgggtaaatatgttgacacttatttgagggattgggggttgtatggtaagatattaacggtaacggtggataatgccaaggcaaa |
4316563 |
T |
|
| Q |
201 |
tgatgtgatgattcgatatttgcataa |
227 |
Q |
| |
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|||||| ||||||| |||||||||||| |
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| T |
4316562 |
tgatgttatgattcaatatttgcataa |
4316536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 16045912 - 16046138
Alignment:
| Q |
1 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcatgaattgaagctacacaagaaaatcatcaacttttgccaaatcacgggtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
16045912 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgctgatcgtgaattgaagctgcacaagaaaatcatcaacttttgccaaatcacaagtc |
16046011 |
T |
|
| Q |
101 |
acacgggagacatgttgggtaaatatgttgacacttatttgagggattggggattgtatggtaagatattaacggtgacagtggataatgccaaggcaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||| |||||||||| |||| |
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| T |
16046012 |
acacgggagacatgttgggtaaatatgttgacacttatttgagggattgagggttgtatggtaagatattaacggtaacggtgggtaatgccaagacaaa |
16046111 |
T |
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| Q |
201 |
tgatgtgatgattcgatatttgcataa |
227 |
Q |
| |
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|||||| |||||||||||| ||||||| |
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| T |
16046112 |
tgatgttatgattcgatatctgcataa |
16046138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 10142850 - 10143060
Alignment:
| Q |
8 |
aaaacttaaattacatgagtttgaccgttcattttgttgatcatgaattgaagctacacaagaaaatcatcaacttttgccaaatcacgggtcacacggg |
107 |
Q |
| |
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|||| |||| ||| |||||| ||| |||||||||||| || ||| ||||| || ||| ||||||| ||||||||||| ||||||| ||||||||| | |
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| T |
10142850 |
aaaatttaagttatatgagtctgattgttcattttgttaatggtgagttgaaactgcacgagaaaattatcaacttttgtcaaatcatgggtcacaccga |
10142949 |
T |
|
| Q |
108 |
agacatgttgggtaaatatgttgacacttatttgagggattggggattgtatggtaagatattaacggtgacagtggataatgccaaggcaaatgatgtg |
207 |
Q |
| |
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||| ||||||||||||||||||||||| ||||| ||| |||| || ||| | ||||| || |||||||| || ||||| |||| |||| ||||||| || |
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| T |
10142950 |
agatatgttgggtaaatatgttgacacatatttaaggaattgagggttgaacggtaaaatcttaacggtaacggtggacaatgtcaagtcaaatgaagtt |
10143049 |
T |
|
| Q |
208 |
atgattcgata |
218 |
Q |
| |
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||||||||||| |
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| T |
10143050 |
atgattcgata |
10143060 |
T |
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