View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8943_low_22 (Length: 224)
Name: NF8943_low_22
Description: NF8943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8943_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 41706490 - 41706299
Alignment:
| Q |
17 |
agacggaacaccgacaaaacttcgcacttctgacctcacaccccttgctaaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgtg |
116 |
Q |
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| T |
41706490 |
agacggaacaccgacaaaacttcgcacttctgacctcacaccccttgctaaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgtg |
41706391 |
T |
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| Q |
117 |
tcagacttgaccattctaaaagcaaacttgctgacagcaatccttaagggtgaaccagtcaatgttggtcgtctcctagcagatgacctttg |
208 |
Q |
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| T |
41706390 |
tcagacttgaccattctaaaagcaaacttgctgacagcaatccttaagggtgaaccagtcaatgttggtcgtctcctagcagatgacctttg |
41706299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 21 - 208
Target Start/End: Complemental strand, 41716289 - 41716102
Alignment:
| Q |
21 |
ggaacaccgacaaaacttcgcacttctgacctcacaccccttgctaaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgtgtcag |
120 |
Q |
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| T |
41716289 |
ggaacaccagcaaaacttcgcacgtgtgacctcactcccgttgctaaagtatgggcaatgtttgttttgcgcaccttgctcccatgttcaaatagatcag |
41716190 |
T |
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| Q |
121 |
acttgaccattctaaaagcaaacttgctgacagcaatccttaagggtgaaccagtcaatgttggtcgtctcctagcagatgacctttg |
208 |
Q |
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| T |
41716189 |
acttgaccattctaaaagctaacttactgactgcaatccttaagggtgagccagtcaatgttggtcgtctcctagcaaatgacatttg |
41716102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 41665235 - 41665074
Alignment:
| Q |
41 |
cacttctgacctcacaccccttgctaaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgtgtcagacttgaccattctaaaagca |
140 |
Q |
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| T |
41665235 |
cacttctgacctcacacccattgctaaagcatgggcaacatttattttgcgaaccttgctcccgtgttcaaatgtgtcagacttgaccattcagaaagca |
41665136 |
T |
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| Q |
141 |
aacttgctgacagcaatccttaagggtgaaccagtcaatgttggtcgtctcctagcagatga |
202 |
Q |
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| T |
41665135 |
accttgctgactgcaattcttaagggtgaaccagtcaatgtcggtcgtctcctagcaaatga |
41665074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 41656494 - 41656308
Alignment:
| Q |
21 |
ggaacaccgacaaaacttcgcacttctgacctcacaccccttgctaaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgtgtcag |
120 |
Q |
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| T |
41656494 |
ggaacaccaataaaacttaactcttctgacctgacacccattgctaaagcatgggaaacatttattttgcataccttgcttccgagttcaaatgtgtcag |
41656395 |
T |
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| Q |
121 |
acttgaccattctaaaagcaaacttgctgacagcaatccttaagggtgaaccagtcaatgttggtcgtctcctagcagatgaccttt |
207 |
Q |
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| T |
41656394 |
acttgccccttcagaaagcaaccttgataactgcaatccttaagggcgaaccagtcaatgtcgtccgtctcctagcaaatgaccttt |
41656308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 51 - 208
Target Start/End: Complemental strand, 41648373 - 41648216
Alignment:
| Q |
51 |
ctcacaccccttgctaaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgtgtcagacttgaccattctaaaagcaaacttgctga |
150 |
Q |
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| T |
41648373 |
ctcacacccattgcgaaagcatggacaacatttgttttgcatacattactcccatgttcaaatgcgtcagagttgaccattccgaaatcgaccttgctga |
41648274 |
T |
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| Q |
151 |
cagcaatccttaagggtgaaccagtcaatgttggtcgtctcctagcagatgacctttg |
208 |
Q |
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| T |
41648273 |
ctgcaatcctgaagggtgaaccaatcaatgttggtcgtctcctagcagaagacctttg |
41648216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 2440611 - 2440802
Alignment:
| Q |
17 |
agacggaacaccgacaaaacttcgcacttctgacctcacaccccttgctaaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgtg |
116 |
Q |
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| T |
2440611 |
agacggaacaccaagaaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtg |
2440710 |
T |
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| Q |
117 |
tcagacttgaccattctaaaagcaaacttgctgacagcaatccttaagggtgaaccagtcaatgttggtcgtctcctagcagatgacctttg |
208 |
Q |
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| T |
2440711 |
tcagacttgaccattcagaaagcaaccttgctaactgcaatccttaagggtgaaccagtcaatgttggccgtctcctagtaaatgacctttg |
2440802 |
T |
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