View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8943_low_24 (Length: 223)

Name: NF8943_low_24
Description: NF8943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8943_low_24
NF8943_low_24
[»] chr2 (5 HSPs)
chr2 (14-172)||(21530577-21530735)
chr2 (14-172)||(19466331-19466489)
chr2 (48-172)||(19444830-19444954)
chr2 (41-170)||(15328541-15328673)
chr2 (48-169)||(21250016-21250133)
[»] chr1 (7 HSPs)
chr1 (14-172)||(17851181-17851338)
chr1 (43-172)||(15803916-15804045)
chr1 (48-172)||(23477739-23477864)
chr1 (42-172)||(10339972-10340098)
chr1 (42-146)||(1625793-1625894)
chr1 (48-172)||(11667665-11667790)
chr1 (108-172)||(12753350-12753414)
[»] chr6 (10 HSPs)
chr6 (14-172)||(23882503-23882660)
chr6 (41-172)||(17869722-17869851)
chr6 (41-172)||(17879474-17879603)
chr6 (41-168)||(28623747-28623875)
chr6 (48-170)||(11960703-11960821)
chr6 (48-115)||(29254778-29254844)
chr6 (42-161)||(26965397-26965511)
chr6 (48-172)||(21323083-21323207)
chr6 (44-95)||(20764884-20764934)
chr6 (48-145)||(17864258-17864355)
[»] chr7 (15 HSPs)
chr7 (14-172)||(14926840-14927001)
chr7 (14-172)||(15350306-15350467)
chr7 (47-174)||(20924911-20925038)
chr7 (48-172)||(10280040-10280165)
chr7 (48-145)||(16437005-16437101)
chr7 (48-169)||(26132736-26132855)
chr7 (14-169)||(7586347-7586495)
chr7 (43-169)||(24902324-24902446)
chr7 (42-169)||(21260650-21260773)
chr7 (55-169)||(23960259-23960369)
chr7 (108-172)||(42636508-42636572)
chr7 (77-172)||(42783019-42783114)
chr7 (109-172)||(10661153-10661216)
chr7 (42-104)||(10038607-10038668)
chr7 (42-169)||(23082592-23082715)
[»] chr5 (10 HSPs)
chr5 (47-172)||(13338817-13338942)
chr5 (41-170)||(22184409-22184538)
chr5 (48-172)||(23624108-23624232)
chr5 (48-172)||(26329019-26329143)
chr5 (42-169)||(9522750-9522873)
chr5 (46-145)||(30605524-30605623)
chr5 (49-146)||(20714574-20714669)
chr5 (42-170)||(13941816-13941939)
chr5 (48-172)||(18221341-18221464)
chr5 (48-172)||(26037041-26037167)
[»] chr4 (7 HSPs)
chr4 (14-172)||(15622634-15622788)
chr4 (16-172)||(19183489-19183645)
chr4 (14-161)||(13399125-13399270)
chr4 (49-169)||(19659667-19659788)
chr4 (14-161)||(32861840-32861980)
chr4 (44-94)||(41785655-41785704)
chr4 (108-172)||(9069234-9069298)
[»] chr8 (4 HSPs)
chr8 (38-172)||(24092177-24092312)
chr8 (48-145)||(33977287-33977385)
chr8 (42-104)||(24850312-24850373)
chr8 (108-172)||(9996788-9996852)
[»] chr3 (9 HSPs)
chr3 (48-172)||(286704-286826)
chr3 (16-172)||(21718736-21718889)
chr3 (13-172)||(21253802-21253959)
chr3 (48-145)||(28051367-28051464)
chr3 (41-172)||(17042559-17042691)
chr3 (42-169)||(980184-980307)
chr3 (108-172)||(6579354-6579418)
chr3 (42-105)||(15674975-15675037)
chr3 (49-169)||(21094519-21094635)
[»] scaffold0003 (1 HSPs)
scaffold0003 (48-145)||(26635-26731)
[»] scaffold0015 (1 HSPs)
scaffold0015 (41-170)||(202610-202736)
[»] scaffold0226 (3 HSPs)
scaffold0226 (37-145)||(7372-7480)
scaffold0226 (37-145)||(17959-18067)
scaffold0226 (37-145)||(27353-27461)


Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 21530577 - 21530735
Alignment:
Q  14 cctgtgattatcagactttaaacaactcaaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagttt 113  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  21530577 cctgtgattatcagactttaaataactcaaatggtgaagttaccttcaaacaaccaactacaatcttgcttaaaagctttggcgtagcacacaagagttt 21530676  T
Q  114 acaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||    
T  21530677 acaactcaacacacattccttaacatgtatcaaactgatacaagaaaggctcacaataa 21530735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 19466489 - 19466331
Alignment:
Q  14 cctgtgattatcagactttaa-acaactcaaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtt 112  Q
    |||||||||||||||||| || ||||    |||| ||||||||||||||||||| ||||||||| |||||| |||| ||| |||||| |||||||| | |    
T  19466489 cctgtgattatcagacttaaacacaaaaacaatgatgaagttaccttcaaacaaacaactacaatcttgctcaaaaacttaggcgtagcacacaagtg-t 19466391  T
Q  113 tacaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    |||||||||||||||| |||||||||| |||||||   |||||||||||| |||||||||    
T  19466390 tacaactcaacacacaatccttaacatgtatcaaagagatacaagaaaggctcacaataa 19466331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 19444830 - 19444954
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatcaaa 147  Q
    ||||||||||||||||||| ||||||| |||||||||| |||||| || ||| || ||||||||||||||||||||| ||| |||||| ||| ||||||     
T  19444830 tgaagttaccttcaaacaaacaactacgaccttgcttacaagcttcggtgtagcatacaagagtttacaactcaacaaacagtccttagcatgtatcaag 19444929  T
Q  148 ctaatacaagaaaggatcacaataa 172  Q
     | |||||||||||| |||||||||    
T  19444930 atgatacaagaaaggctcacaataa 19444954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 15328541 - 15328673
Alignment:
Q  41 caaatggtgaagttaccttcaaac-aaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaaca---cacattccttaa 136  Q
    |||||||||||||||||||||||| || ||||||| |||||| ||||||||| ||| ||| |||| |  |||||||||||||| |   |||| || ||||    
T  15328541 caaatggtgaagttaccttcaaactaaacaactacgaccttgtttaaaagctctggtgtagcaca-acaagtttacaactcaataaagcacaatctttaa 15328639  T
Q  137 catatatcaaactaatacaagaaaggatcacaat 170  Q
     || ||||||  | |||||||||||| |||||||    
T  15328640 tatgtatcaagatgatacaagaaaggctcacaat 15328673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 21250133 - 21250016
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatcaaa 147  Q
    ||||||||||||||||||   |||||||||||||||| |||||||||| |||  |||| ||   ||||||||||| | ||| |||||||||| || |||     
T  21250133 tgaagttaccttcaaacata-aactacaaccttgcttcaaagctttggtgtagtacacgag---ttacaactcaataaacagtccttaacatgtaccaag 21250038  T
Q  148 ctaatacaagaaaggatcacaa 169  Q
     | |||||||||||| ||||||    
T  21250037 gtgatacaagaaaggctcacaa 21250016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 17851338 - 17851181
Alignment:
Q  14 cctgtgattatcagactttaaacaactcaaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagttt 113  Q
    |||||||||||||||||| ||||||   ||| ||||||||||||||||||||| ||||||||||||||||||| || ||||||||| |||||||||||||    
T  17851338 cctgtgattatcagacttaaaacaaaa-aaacggtgaagttaccttcaaacaaacaactacaaccttgcttaatagttttggcgtagcacacaagagttt 17851240  T
Q  114 acaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||||||| |||||||||    
T  17851239 acaactcaacacacagtccttaacatgtatcaaactgatacaagaaaggctcacaataa 17851181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 15804045 - 15803916
Alignment:
Q  43 aatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatata 142  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||    
T  15804045 aatgatgaagttaccttcaaacaaacaactacaaccttacttaaaagctttggcgtagcacacaagagtttacaactcaacacacaatccttaacatgta 15803946  T
Q  143 tcaaactaatacaagaaaggatcacaataa 172  Q
    ||||||| |||||||||||| ||| |||||    
T  15803945 tcaaactgatacaagaaaggctcataataa 15803916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 23477864 - 23477739
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatca-a 146  Q
    |||||||||||||||| || ||||||||||||  ||||| |||||||||||| |||||||||||||||||||||||||||| | || |||||  |||| |    
T  23477864 tgaagttaccttcaaataaacaactacaacctaacttaacagctttggcgtagcacacaagagtttacaactcaacacacaattctaaacatgaatcaca 23477765  T
Q  147 actaatacaagaaaggatcacaataa 172  Q
    |   ||||||||||||||||||||||    
T  23477764 aaagatacaagaaaggatcacaataa 23477739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 10340098 - 10339972
Alignment:
Q  42 aaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatat 141  Q
    |||||||||||||||||||||||| | ||||||||| |||||| |||||||||| ||||||||| ||   ||||||||||| | | | || ||||||| |    
T  10340098 aaatggtgaagttaccttcaaaca-caaactacaacattgcttcaaagctttggtgtaacacacgag---ttacaactcaataaaaagtcattaacatgt 10340003  T
Q  142 atcaaactaatacaagaaaggatcacaataa 172  Q
    ||||| || |||||||||||| |||||||||    
T  10340002 atcaagctgatacaagaaaggctcacaataa 10339972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 1625793 - 1625894
Alignment:
Q  42 aaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatat 141  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||| |||  ||||  ||||||||||||||| | | | |||||||||| |    
T  1625793 aaatggtgaagttaccttcaaaca-caatctacaaccttgcttaaaagctttggtgtaggacac--gagtttacaactcaataaatagtccttaacatgt 1625889  T
Q  142 atcaa 146  Q
    |||||    
T  1625890 atcaa 1625894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 11667790 - 11667665
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatca-a 146  Q
    ||||||||| ||||||||| ||||||  |||||| || | | ||| || |||  |||||||||| |  ||||||||||||| |||||||||| ||||| |    
T  11667790 tgaagttacattcaaacaaacaactaacaccttgtttcataacttcggtgtagtacacaagagtatcaaactcaacacacagtccttaacatgtatcaca 11667691  T
Q  147 actaatacaagaaaggatcacaataa 172  Q
    |   ||||||||||||||||||||||    
T  11667690 aacgatacaagaaaggatcacaataa 11667665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 12753350 - 12753414
Alignment:
Q  108 gagtttacaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    ||||||||||||||||| ||| |||||| ||| ||||||  | |||||||||||| |||||||||    
T  12753350 gagtttacaactcaacaaacagtccttagcatgtatcaagatgatacaagaaaggctcacaataa 12753414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 23882660 - 23882503
Alignment:
Q  14 cctgtgattatcagactttaaacaactcaaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagttt 113  Q
    ||||||||||||||||||  ||||| | |||||||||| |||||||||||||| ||||| ||||||||||||| | |||||||||| |||||||||||||    
T  23882660 cctgtgattatcagacttataacaaat-aaatggtgaatttaccttcaaacaaacaactgcaaccttgcttaacaactttggcgtagcacacaagagttt 23882562  T
Q  114 acaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    | ||||||||||||| |||||||||| ||||||||| |||||||||||| |||||||||    
T  23882561 ataactcaacacacagtccttaacatgtatcaaactgatacaagaaaggctcacaataa 23882503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 172
Target Start/End: Complemental strand, 17869851 - 17869722
Alignment:
Q  41 caaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacata 140  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||| | ||| ||||||||||||| ||| |||||||| |     
T  17869851 caaattgtgaagttaccttcaaacaaacaactacaaccttgcttaaaagttttggtgtagcaca-acgag-ttacaactcaacaaacaatccttaacttg 17869754  T
Q  141 tatcaaactaatacaagaaaggatcacaataa 172  Q
    ||||||    |||||||||||| || ||||||    
T  17869753 tatcaagaagatacaagaaaggctcgcaataa 17869722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 172
Target Start/End: Complemental strand, 17879603 - 17879474
Alignment:
Q  41 caaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacata 140  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||| | ||| ||||||||||||| ||| |||||||| |     
T  17879603 caaattgtgaagttaccttcaaacaaacaactacaaccttgcttaaaagttttggtgtagcaca-acgag-ttacaactcaacaaacaatccttaacttg 17879506  T
Q  141 tatcaaactaatacaagaaaggatcacaataa 172  Q
    ||||||    |||||||||||| || ||||||    
T  17879505 tatcaagaagatacaagaaaggctcgcaataa 17879474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 28623747 - 28623875
Alignment:
Q  41 caaatggtgaagttaccttcaaacaaccaactacaacctt-gcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacat 139  Q
    |||| |||||||||||||||||||||   ||||| || || ||||| ||||||||| ||| || ||||||||||||||||||| | ||| |||||||| |    
T  28623747 caaacggtgaagttaccttcaaacaaaacactacgacatttgcttacaagctttggtgtagcatacaagagtttacaactcaataaacagtccttaactt 28623846  T
Q  140 atatcaaactaatacaagaaaggatcaca 168  Q
     ||||||  | |||||||||||| |||||    
T  28623847 gtatcaagatgatacaagaaaggctcaca 28623875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 11960703 - 11960821
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatcaaa 147  Q
    |||||||||||||||||| | |||||||||||||||| |||||||||| ||| ||||| ||   ||||||||||| | ||| |||||||| | | |||||    
T  11960703 tgaagttaccttcaaaca-caaactacaaccttgctttaaagctttggtgtagcacacgag---ttacaactcaataaacagtccttaacctgtgtcaaa 11960798  T
Q  148 ctaatacaagaaaggatcacaat 170  Q
       |||||||||||| |||||||    
T  11960799 aagatacaagaaaggctcacaat 11960821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 29254844 - 29254778
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttac 115  Q
    |||||||||||||||||||  |||||||||||| ||||||||||||||| ||  ||||||||||||||    
T  29254844 tgaagttaccttcaaacaaa-aactacaaccttacttaaaagctttggcatagaacacaagagtttac 29254778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 26965511 - 26965397
Alignment:
Q  42 aaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatat 141  Q
    ||||| |||||| ||||||||||| | |||||||||||||||| |||||||||| ||| |||   |||| ||||||||||| | ||| |||||||||| |    
T  26965511 aaatgatgaagtgaccttcaaaca-caaactacaaccttgcttcaaagctttggtgtagcac---agag-ttacaactcaataaacagtccttaacatgt 26965417  T
Q  142 atcaaactaatacaagaaag 161  Q
    |||||  | |||||||||||    
T  26965416 atcaaggtgatacaagaaag 26965397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 21323207 - 21323083
Alignment:
Q  48 tgaagttaccttcaaacaac-caactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatcaa 146  Q
    |||||||||||||||||||  ||||||| |||||| |||||| | |||| ||| |||| | ||||||||||||||| | ||| |||||| ||| ||||||    
T  21323207 tgaagttaccttcaaacaaaacaactacgaccttgtttaaaatcattggtgtagcaca-acgagtttacaactcaataaacagtccttatcatgtatcaa 21323109  T
Q  147 actaatacaagaaaggatcacaataa 172  Q
      |  |||| |||||| |||||||||    
T  21323108 gatgttacacgaaaggctcacaataa 21323083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 20764934 - 20764884
Alignment:
Q  44 atggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttgg 95  Q
    ||||||||||||||||||||| || |||||| ||||||||| ||||||||||    
T  20764934 atggtgaagttaccttcaaac-acaaactactaccttgcttcaaagctttgg 20764884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 17864355 - 17864258
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatca 145  Q
    ||||||||||||||||||| |||||   |||||| || | | |||||| |||  |||||||||| |  ||||||||||||| |||| ||||| |||||    
T  17864355 tgaagttaccttcaaacaaacaactcacaccttgttttacaactttggtgtagtacacaagagtatcaaactcaacacacagtcctaaacatgtatca 17864258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 14926840 - 14927001
Alignment:
Q  14 cctgtgattatcagactttaaacaactcaaa----tggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaaga 109  Q
    ||||||||||||| |||| ||||||||||||    || ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| ||||    
T  14926840 cctgtgattatcatactt-aaacaactcaaaacaatgatgaagttaccttcaaacaaacaactacaacctttcttaaaagctttggcgtagcacagaaga 14926938  T
Q  110 gtttacaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    ||||||||||||||||||| |||||||||| ||||||| | | ||||| |||| |||||||||    
T  14926939 gtttacaactcaacacacagtccttaacatgtatcaaattgaaacaaggaaggctcacaataa 14927001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 15350306 - 15350467
Alignment:
Q  14 cctgtgattatcagactttaaacaactcaaa----tggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaaga 109  Q
    ||||||||||||| |||| ||||||||||||    || ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| ||||    
T  15350306 cctgtgattatcatactt-aaacaactcaaaacaatgatgaagttaccttcaaacaaacaactacaacctttcttaaaagctttggcgtagcacagaaga 15350404  T
Q  110 gtttacaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    ||||||||||||||||||| |||||||||| ||||||| | | ||||| |||| |||||||||    
T  15350405 gtttacaactcaacacacagtccttaacatgtatcaaattgaaacaaggaaggctcacaataa 15350467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 174
Target Start/End: Complemental strand, 20925038 - 20924911
Alignment:
Q  47 gtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatca- 145  Q
    |||||||||||||||||||| || ||||||||||||||| ||||||||| ||| ||||||||| |||||||||||| ||||| |||||| ||| |||||     
T  20925038 gtgaagttaccttcaaacaaacagctacaaccttgcttataagctttggtgtagcacacaaga-tttacaactcaatacacaatccttagcatgtatcac 20924940  T
Q  146 aactaatacaagaaaggatcacaataata 174  Q
    ||  ||||||||||||| |||||||||||    
T  20924939 aaacaatacaagaaaggctcacaataata 20924911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 10280040 - 10280165
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatca-a 146  Q
    ||||||||||||||||||  ||||||||||||| ||||| |||||||||||| |||||||| ||||||||| ||||||||| |||| ||||| ||||| |    
T  10280040 tgaagttaccttcaaacagacaactacaaccttacttaacagctttggcgtagcacacaagtgtttacaacccaacacacagtcctaaacatttatcaca 10280139  T
Q  147 actaatacaagaaaggatcacaataa 172  Q
    |   |||||||||||| |||||||||    
T  10280140 aacgatacaagaaaggctcacaataa 10280165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 16437005 - 16437101
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatca 145  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||  |||||||||||| |||||| ||||||| |||| ||||| |||||    
T  16437005 tgaagttaccttcaaacaaa-aactacaaccttgcttaaaagctttggcgtagaacacaagagtttccaactctacacacagtcctaaacatgtatca 16437101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 26132855 - 26132736
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatcaaa 147  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||| | ||| ||||||||||||||||| |||||||||| ||||||     
T  26132855 tgaagttaccttcaaacaaacaactacaaccttgcttaaaagttttggtgtagcaca-acgag-ttacaactcaacacacaatccttaacatgtatcaag 26132758  T
Q  148 ctaatacaagaaaggatcacaa 169  Q
       ||||||| |||||||||||    
T  26132757 aagatacaagcaaggatcacaa 26132736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 7586495 - 7586347
Alignment:
Q  14 cctgtgattatcagactttaaacaactcaaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagttt 113  Q
    ||||||||||||| | |||||||||   ||||||||||||||||||||||| ||||||||||||||||||| |||| ||||| |||  |||| ||   ||    
T  7586495 cctgtgattatcaaa-tttaaacaaa--aaatggtgaagttaccttcaaac-accaactacaaccttgctttaaagttttggtgtaggacacgag---tt 7586403  T
Q  114 acaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaa 169  Q
    |||| |||| | ||| |||||||||| ||||||  | |||||||||||| ||||||    
T  7586402 acaattcaataaacagtccttaacatgtatcaaggtgatacaagaaaggctcacaa 7586347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 169
Target Start/End: Original strand, 24902324 - 24902446
Alignment:
Q  43 aatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatata 142  Q
    |||||||||||||||||||||| || ||||||||| |||||| |||||||||| ||| ||||| ||   ||||||||||| | ||| || ||||||| ||    
T  24902324 aatggtgaagttaccttcaaac-acaaactacaactttgcttcaaagctttggtgtagcacacgag---ttacaactcaataaacagtctttaacatgta 24902419  T
Q  143 tcaaactaatacaagaaaggatcacaa 169  Q
    ||||  | |||||||||||| ||||||    
T  24902420 tcaaggtgatacaagaaaggttcacaa 24902446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 169
Target Start/End: Original strand, 21260650 - 21260773
Alignment:
Q  42 aaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatat 141  Q
    ||||||||||||||||||||||| || |||||||||||||||| |||||| ||| ||||||||  ||   ||||||||||| | | | || ||||||| |    
T  21260650 aaatggtgaagttaccttcaaac-acaaactacaaccttgcttcaaagctatggtgtaacacatgag---ttacaactcaataaaaaatcattaacatgt 21260745  T
Q  142 atcaaactaatacaagaaaggatcacaa 169  Q
    |||||  | |||||||||||| ||||||    
T  21260746 atcaaggtgatacaagaaaggctcacaa 21260773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 169
Target Start/End: Original strand, 23960259 - 23960369
Alignment:
Q  55 accttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatcaaactaatac 154  Q
    ||||||||||||  |||||||||||||||| |||||||||| |||  |||| ||   ||||||||||| | ||| | |||||||| ||||||| | ||||    
T  23960259 accttcaaacaaa-aactacaaccttgcttcaaagctttggtgtaggacacgag---ttacaactcaataaacaattcttaacatgtatcaaagtgatac 23960354  T
Q  155 aagaaaggatcacaa 169  Q
    |||||||| ||||||    
T  23960355 aagaaaggctcacaa 23960369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 42636508 - 42636572
Alignment:
Q  108 gagtttacaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    ||||||||||||||||| ||| |||||||||| ||||||  | |||||||||||| |||||||||    
T  42636508 gagtttacaactcaacaaacagtccttaacatgtatcaagatgatacaagaaaggctcacaataa 42636572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 42783019 - 42783114
Alignment:
Q  77 ccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    |||||||||||||||| || |||   |||| ||||||||||||||||| ||| |||||| ||| ||||||  | |||||||||||  |||||||||    
T  42783019 ccttgcttaaaagcttcggagtagtgcacatgagtttacaactcaacaaacagtccttagcatttatcaatatgatacaagaaagactcacaataa 42783114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 10661153 - 10661216
Alignment:
Q  109 agtttacaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    |||||||||||||||| ||| |||||| ||| ||||||  | |||||||||||| |||||||||    
T  10661153 agtttacaactcaacaaacagtccttagcatgtatcaagatgatacaagaaaggctcacaataa 10661216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 10038668 - 10038607
Alignment:
Q  42 aaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacaca 104  Q
    ||||||||| ||||||||||||||   |||||||||||||||| |||||||||| ||| ||||    
T  10038668 aaatggtga-gttaccttcaaacacaaaactacaaccttgcttcaaagctttggggtagcaca 10038607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 169
Target Start/End: Complemental strand, 23082715 - 23082592
Alignment:
Q  42 aaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatat 141  Q
    ||||||||||||||| ||||||| || ||||||||||||| ||  |||| |||| ||| ||||  ||   ||||||||||| | ||| || ||||||| |    
T  23082715 aaatggtgaagttacattcaaac-acaaactacaaccttgattcgaagcattggtgtagcacatgag---ttacaactcaataaacagtctttaacatgt 23082620  T
Q  142 atcaaactaatacaagaaaggatcacaa 169  Q
    |||||  | |||||||||||| ||||||    
T  23082619 atcaaggtgatacaagaaaggctcacaa 23082592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 47 - 172
Target Start/End: Original strand, 13338817 - 13338942
Alignment:
Q  47 gtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatcaa 146  Q
    |||||||||||||||||||| ||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||||||    
T  13338817 gtgaagttaccttcaaacaaacaactacaaccttacttaacagctttggcgtagcacacaagagtttacaactcaaaacacagtccttaacatgtatcaa 13338916  T
Q  147 actaatacaagaaaggatcacaataa 172  Q
    ||| ||| |||||||  |||||||||    
T  13338917 actgatataagaaagactcacaataa 13338942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 41 - 170
Target Start/End: Complemental strand, 22184538 - 22184409
Alignment:
Q  41 caaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacata 140  Q
    |||| |||| ||||||||||||||||   ||||| |||||||||| ||||||||| ||| |||||||||||||||||||||| | ||| ||||||||||     
T  22184538 caaacggtggagttaccttcaaacaaaacactacgaccttgcttacaagctttggtgtagcacacaagagtttacaactcaataaacaatccttaacatg 22184439  T
Q  141 tatcaaactaatacaagaaaggatcacaat 170  Q
    ||||||  | ||| |||||||| |||||||    
T  22184438 tatcaagatgataaaagaaaggctcacaat 22184409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 23624108 - 23624232
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatca-a 146  Q
    |||||||||||||||||||  |||||||||||||||||||||||||  ||||  ||||||||||||||||||| ||||||| |||||| ||| ||||| |    
T  23624108 tgaagttaccttcaaacaaa-aactacaaccttgcttaaaagctttttcgtagaacacaagagtttacaactctacacacagtccttagcatgtatcaca 23624206  T
Q  147 actaatacaagaaaggatcacaataa 172  Q
    |   |||||||||||| |||||||||    
T  23624207 aacgatacaagaaaggctcacaataa 23624232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 26329143 - 26329019
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatat--ca 145  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||||| |||  ||||||| ||||||||||||||||||| |||| ||||| |||  ||    
T  26329143 tgaagttaccatcaaacaaa-aactacaaccttgcttaaaagctttggtgtagaacacaagtgtttacaactcaacacacagtcctaaacatgtatccca 26329045  T
Q  146 aactaatacaagaaaggatcacaataa 172  Q
    |||  |||||||||||| |||||||||    
T  26329044 aac-gatacaagaaaggctcacaataa 26329019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 169
Target Start/End: Original strand, 9522750 - 9522873
Alignment:
Q  42 aaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatat 141  Q
    ||||| |||||||||||||||||| | |||||||||||||||| |||||||||| ||| ||||| ||   ||||||||||| | ||| |||||||||| |    
T  9522750 aaatgatgaagttaccttcaaaca-caaactacaaccttgcttcaaagctttggtgtagcacacgag---ttacaactcaataaacagtccttaacatgt 9522845  T
Q  142 atcaaactaatacaagaaaggatcacaa 169  Q
    |||||  | |||| ||||||| ||||||    
T  9522846 atcaaggtgatactagaaaggctcacaa 9522873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 30605623 - 30605524
Alignment:
Q  46 ggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatca 145  Q
    ||||||||||||||||||||  ||||||  |||||||||| ||||||||| |||  ||||||| |  ||||||| |||||||| |||||||||| |||||    
T  30605623 ggtgaagttaccttcaaacatacaactaacaccttgcttacaagctttggtgtagtacacaagtgaatacaacttaacacacagtccttaacatgtatca 30605524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 20714669 - 20714574
Alignment:
Q  49 gaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatcaa 146  Q
    |||||||||||||||||| ||||||||||||||||||| | |||||| ||| |||| | ||| ||||||||||||| ||| || ||||||| ||||||    
T  20714669 gaagttaccttcaaacaaacaactacaaccttgcttaacaactttggtgtagcaca-acgag-ttacaactcaacaaacagtctttaacatgtatcaa 20714574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 170
Target Start/End: Complemental strand, 13941939 - 13941816
Alignment:
Q  42 aaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatat 141  Q
    ||||| |||||||||||||||||||  |||||||||||||||| |||||||||| ||| ||||| ||   ||||||||||| | ||| |||||| ||  |    
T  13941939 aaatgatgaagttaccttcaaacaa--aactacaaccttgcttcaaagctttggtgtagcacacgag---ttacaactcaataaacagtccttagcaagt 13941845  T
Q  142 atcaaactaatacaagaaaggatcacaat 170  Q
    |||||    |||||||||||| |||||||    
T  13941844 atcaaggagatacaagaaaggctcacaat 13941816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 18221341 - 18221464
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatc-aa 146  Q
    |||||||||||||||| ||  ||||||||| || ||||||||||||  ||||| |||||||||||| |||||| ||||||| |||| ||||| ||||  |    
T  18221341 tgaagttaccttcaaagaaa-aactacaacttttcttaaaagctttatcgtaaaacacaagagttt-caactctacacacagtcctaaacatgtatcgca 18221438  T
Q  147 actaatacaagaaaggatcacaataa 172  Q
    | | |||||||||||  |||||||||    
T  18221439 aatgatacaagaaagactcacaataa 18221464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 26037041 - 26037167
Alignment:
Q  48 tgaagttaccttcaaaca-accaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatcaa 146  Q
    |||||||||||||||||| | ||||||  ||||||| ||||| ||| || |||  || ||||||| || ||||||||||||| |||| ||||| ||||||    
T  26037041 tgaagttaccttcaaacacaacaactaacaccttgcgtaaaatcttcggtgtagtacccaagagtataaaactcaacacacagtcctaaacatgtatcaa 26037140  T
Q  147 a-ctaatacaagaaaggatcacaataa 172  Q
    |    |||||||||||| |||||||||    
T  26037141 agacgatacaagaaaggctcacaataa 26037167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 15622634 - 15622788
Alignment:
Q  14 cctgtgattatcagactttaaacaactcaaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagttt 113  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| | ||| ||    
T  15622634 cctgtgattatcaga-tttaaaca-cacaaatggtgaagttaccttcaaacaaacaactacaaccttgcttaaaagctttggtgtagcaca-atgag-tt 15622729  T
Q  114 acaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    |||||| |||| ||| |||||||||| ||||||    ||||||| |||| |||||||||    
T  15622730 acaactaaacaaacagtccttaacatgtatcaagaagatacaagcaaggctcacaataa 15622788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 19183645 - 19183489
Alignment:
Q  16 tgtgattatcagactttaaaca-actcaaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagttta 114  Q
    |||||||||||||||  ||||| |  |||||||||||||||||||||||||| ||||||| |||||||||| ||| || |  ||| |||| | |||||||    
T  19183645 tgtgattatcagactaaaaacacaaacaaatggtgaagttaccttcaaacaaacaactacgaccttgcttacaagattcgatgtagcaca-acgagttta 19183547  T
Q  115 caactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    |||||||||| ||| |||||| ||| ||||||  | |||||||||||| |||||||||    
T  19183546 caactcaacaaacagtccttagcatgtatcaagatgatacaagaaaggctcacaataa 19183489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 13399270 - 13399125
Alignment:
Q  14 cctgtgattatcagactttaaacaactcaaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagttt 113  Q
    |||||||||||||||||  ||||| | ||||||||||| |||| ||||||||| ||||||| ||||| |||||||||||||| ||| |||| | ||||||    
T  13399270 cctgtgattatcagactaaaaaca-cacaaatggtgaatttacattcaaacaaacaactacgaccttccttaaaagctttggtgtagcaca-acgagttt 13399173  T
Q  114 acaactcaacacacattccttaacatatatcaaactaatacaagaaag 161  Q
    ||||||||| | ||| |||||| ||| ||||||  | |||||||||||    
T  13399172 acaactcaataaacagtccttagcatgtatcaagatgatacaagaaag 13399125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 19659667 - 19659788
Alignment:
Q  49 gaagttaccttcaaaca--accaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatcaa 146  Q
    |||||||||||||||||  | ||||||||||||||||| |||||||||| ||| |||| | ||||||||||  ||||||||| |||||| ||| || |||    
T  19659667 gaagttaccttcaaacacaaacaactacaaccttgcttcaaagctttggtgtagcaca-atgagtttacaatccaacacacagtccttaccatgtaccaa 19659765  T
Q  147 actaatacaagaaaggatcacaa 169  Q
      | ||| |||||||| ||||||    
T  19659766 gatgatataagaaaggctcacaa 19659788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 32861840 - 32861980
Alignment:
Q  14 cctgtgattatcagactttaaacaactcaaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagttt 113  Q
    ||||||||||||||| ||||||||    ||||| ||||||||||||||||| |  |||||||||||| ||| |||||||||| |||  |||| ||   ||    
T  32861840 cctgtgattatcaga-tttaaacaca--aaatgatgaagttaccttcaaac-ataaactacaaccttccttcaaagctttggtgtagtacacgag---tt 32861932  T
Q  114 acaactcaacacacattccttaacatatatcaaactaatacaagaaag 161  Q
    ||||||||| | ||| |||||||||| ||| ||  | |||||||||||    
T  32861933 acaactcaataaacagtccttaacatgtattaaggtgatacaagaaag 32861980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 41785655 - 41785704
Alignment:
Q  44 atggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttg 94  Q
    ||||||||||||||||||||| || |||||| ||||||||| |||||||||    
T  41785655 atggtgaagttaccttcaaac-acaaactactaccttgctttaaagctttg 41785704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 9069234 - 9069298
Alignment:
Q  108 gagtttacaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    ||||||||||||||||| ||| | |||| ||| ||||||  | |||||||||||| |||||||||    
T  9069234 gagtttacaactcaacaaacagttcttagcatgtatcaagatgatacaagaaaggctcacaataa 9069298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 172
Target Start/End: Original strand, 24092177 - 24092312
Alignment:
Q  38 actcaaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaac 137  Q
    ||||||| ||||||||||||||||||||| ||||||  |||||||||| ||||||||| |||  || |||||||||||||||||||||||| |||| |||    
T  24092177 actcaaacggtgaagttaccttcaaacaaacaactagcaccttgcttacaagctttggtgtagtactcaagagtttacaactcaacacacaatcctaaac 24092276  T
Q  138 atatatcaaacta-atacaagaaaggatcacaataa 172  Q
    || |||||||    |||||||||||| |||||||||    
T  24092277 atgtatcaaaaacgatacaagaaaggctcacaataa 24092312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 33977287 - 33977385
Alignment:
Q  48 tgaagttaccttcaaaca-accaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatca 145  Q
    |||||||||||||||||| | ||| ||  |||||||||| ||||||||| |||  |||||||||| |  ||||||||||||| |||| ||||| |||||    
T  33977287 tgaagttaccttcaaacacaacaagtaacaccttgcttacaagctttggtgtagtacacaagagtatcaaactcaacacacagtcctaaacatgtatca 33977385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 24850373 - 24850312
Alignment:
Q  42 aaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacaca 104  Q
    ||||| ||||||||| |||||||| | |||||||||||||||| |||||||||| ||| ||||    
T  24850373 aaatgatgaagttacattcaaaca-caaactacaaccttgcttcaaagctttggtgtagcaca 24850312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 9996788 - 9996852
Alignment:
Q  108 gagtttacaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    ||||||||||||||||| | | |||||| ||| ||||||  | |||||||||||| |||||||||    
T  9996788 gagtttacaactcaacaaatagtccttagcatgtatcaagatgatacaagaaaggctcacaataa 9996852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 286826 - 286704
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatcaaa 147  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| | ||  ||||||||||||||||| |||||||||| ||||||     
T  286826 tgaagttaccttcaaacaaacaactacaaccttgcttaaaagctttggtgtagcaca-atga-cttacaactcaacacacagtccttaacatgtatcaag 286729  T
Q  148 ctaatacaagaaaggatcacaataa 172  Q
       |||||||||||| |||||||||    
T  286728 aagatacaagaaaggctcacaataa 286704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 21718889 - 21718736
Alignment:
Q  16 tgtgattatcagactttaaacaactcaaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttac 115  Q
    |||||||||||||||  ||||| | |||||||||||||||||||||||||| ||||||  |||||||||| ||| ||||| ||| |||| | ||||||||    
T  21718889 tgtgattatcagactaaaaaca-cacaaatggtgaagttaccttcaaacaaacaactatgaccttgcttacaag-tttggtgtagcaca-acgagtttac 21718793  T
Q  116 aactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    ||||||| | ||| |||||||||| ||||||  | |||||||||||| |||||||||    
T  21718792 aactcaataaacagtccttaacatgtatcaagatgatacaagaaaggctcacaataa 21718736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 21253959 - 21253802
Alignment:
Q  13 acctgtgattatcagactttaaacaactcaaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtt 112  Q
    ||||||||||||||||||  ||||  | ||||||||||||||| |||||||||| ||||||| ||| |||||| ||||||||  ||| |||| | |||||    
T  21253959 acctgtgattatcagactaaaaacc-cacaaatggtgaagttagcttcaaacaaacaactacgaccatgcttacaagctttgttgtagcaca-acgagtt 21253862  T
Q  113 tacaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    |||||||||||| ||| |||||| ||| ||||||  | ||| |||| ||| |||||||||    
T  21253861 tacaactcaacaaacagtccttagcatgtatcaagatgatataagataggctcacaataa 21253802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 28051367 - 28051464
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatca 145  Q
    ||||||||||||||||||| ||||||||||| | ||| | |||||| | |||  ||||| |||| |||||||||||||||| |||||||||| |||||    
T  28051367 tgaagttaccttcaaacaaacaactacaaccgtacttcagagcttttgagtagtacacatgagtatacaactcaacacacagtccttaacatgtatca 28051464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 172
Target Start/End: Complemental strand, 17042691 - 17042559
Alignment:
Q  41 caaatggtgaagttaccttcaaacaaccaac-tacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacat 139  Q
    |||| ||||||||||||||||||||| | || ||  ||| ||||| | |||||||| |||    ||| ||||||||||||||||| ||| |||||| |||    
T  17042691 caaacggtgaagttaccttcaaacaaactacctaacaccgtgcttcacagctttggtgtagtgtacacgagtttacaactcaacaaacagtccttagcat 17042592  T
Q  140 atatcaaactaatacaagaaaggatcacaataa 172  Q
     ||||||  | |||||||||||| |||||||||    
T  17042591 gtatcaagatgatacaagaaaggctcacaataa 17042559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 169
Target Start/End: Complemental strand, 980307 - 980184
Alignment:
Q  42 aaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatat 141  Q
    |||||||||||||  ||||||||| | || |||||||||| || |||||||||| |||  |||| ||   ||||||||||| | ||| |||||||||| |    
T  980307 aaatggtgaagttgtcttcaaaca-caaattacaaccttgtttcaaagctttggtgtaggacacgag---ttacaactcaataaacagtccttaacatgt 980212  T
Q  142 atcaaactaatacaagaaaggatcacaa 169  Q
    |||||  | |||||||||||| ||||||    
T  980211 atcaaggtgatacaagaaaggctcacaa 980184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 6579418 - 6579354
Alignment:
Q  108 gagtttacaactcaacacacattccttaacatatatcaaactaatacaagaaaggatcacaataa 172  Q
    ||||||||||||||||| ||| |||||| ||| ||||||  | |||||||||||| |||||||||    
T  6579418 gagtttacaactcaacaaacaatccttagcatgtatcaagatgatacaagaaaggctcacaataa 6579354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 15675037 - 15674975
Alignment:
Q  42 aaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacac 105  Q
    ||||| ||||||||||||||||||   |||||||||||||||| |||||||||| ||| |||||    
T  15675037 aaatgatgaagttaccttcaaacata-aactacaaccttgcttcaaagctttggtgtagcacac 15674975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 21094635 - 21094519
Alignment:
Q  49 gaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatcaaac 148  Q
    ||||||||||||||||| | ||||| |||| ||||| |||||||||| ||| ||||| ||   ||||||||||| | ||| |||||| ||| ||| ||      
T  21094635 gaagttaccttcaaaca-caaactaaaaccgtgcttcaaagctttggtgtagcacacgag---ttacaactcaataaacaatccttatcatgtattaagg 21094540  T
Q  149 taatacaagaaaggatcacaa 169  Q
    | |||||||||||| ||||||    
T  21094539 tgatacaagaaaggctcacaa 21094519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 26635 - 26731
Alignment:
Q  48 tgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacatatatca 145  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||  |||||||||||| |||||| ||||||| |||| ||||| |||||    
T  26635 tgaagttaccttcaaacaaa-aactacaaccttgcttaaaagctttggcgtagaacacaagagtttccaactctacacacagtcctaaacatgtatca 26731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 202610 - 202736
Alignment:
Q  41 caaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaacata 140  Q
    ||||||||||||||| |||||||| || | |||||||||||||| |||||||||| |||  | ||  ||||||||||||||| | | | ||||||||||     
T  202610 caaatggtgaagttaacttcaaac-acaatctacaaccttgcttcaaagctttggtgtaggatac--gagtttacaactcaataaaaagtccttaacatg 202706  T
Q  141 tatcaaactaatacaagaaaggatcacaat 170  Q
    ||||||    |||||||||||| |||||||    
T  202707 tatcaagaagatacaagaaaggctcacaat 202736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 7480 - 7372
Alignment:
Q  37 aactcaaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaa 136  Q
    |||||||| | ||||||||||||||||||| ||||||  |||||| |||| | ||| || |||  |||||||||| |  ||||||||||||| |||| ||    
T  7480 aactcaaaagttgaagttaccttcaaacaaacaactaacaccttgtttaacaacttcggtgtagtacacaagagtatcaaactcaacacacagtcctaaa 7381  T
Q  137 catatatca 145  Q
    ||| |||||    
T  7380 catgtatca 7372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 18067 - 17959
Alignment:
Q  37 aactcaaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaa 136  Q
    |||||||| | ||||||||||||||||||| ||||||  |||||| || | | ||| || |||  |||||||||| |  ||||||||||||| |||| ||    
T  18067 aactcaaaagttgaagttaccttcaaacaaacaactaacaccttgtttcacaacttcggtgtagtacacaagagtatcaaactcaacacacagtcctaaa 17968  T
Q  137 catatatca 145  Q
    ||| |||||    
T  17967 catgtatca 17959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 27461 - 27353
Alignment:
Q  37 aactcaaatggtgaagttaccttcaaacaaccaactacaaccttgcttaaaagctttggcgtaacacacaagagtttacaactcaacacacattccttaa 136  Q
    |||||||| | ||||||||||||||||||| ||||||  |||||| || | | ||| || |||  |||||||||| |  ||||||||||||| |||| ||    
T  27461 aactcaaaagttgaagttaccttcaaacaaacaactaacaccttgtttcacaacttcggtgtagtacacaagagtatcaaactcaacacacagtcctaaa 27362  T
Q  137 catatatca 145  Q
    ||| |||||    
T  27361 catgtatca 27353  T

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