View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8943_low_3 (Length: 548)
Name: NF8943_low_3
Description: NF8943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8943_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 35535064 - 35535603
Alignment:
| Q |
1 |
agagcatgttgtgatgggaatcaatggtcagtttcctggcccaactattatagctgatgttggtgacacccttgtcattaatgtcaccaacaagctttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35535064 |
agagcatgttgtgatgggaatcaatggtcagtttcctggcccaactattagagctgaagttggtgacacccttgtcattaatgtcaccaacaagctttct |
35535163 |
T |
|
| Q |
101 |
actgaaggaactgttattcactggcatggaatcagacaggtaaattttctttctcttcttctagt---------tatggaacatactaccagtctaatt- |
190 |
Q |
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| T |
35535164 |
actgaaggaactgttattcactggcatggaatcagacaggtaaattttctttctcttgttctagtggttctagttatggaacatactaccagtctaattt |
35535263 |
T |
|
| Q |
191 |
gtagttaacattgcattttttaatacgttgtggttaatataataatatctatacaaaataatgtttgcagcgtggaactccttgggctgatggaactgct |
290 |
Q |
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| T |
35535264 |
gtagttaacattgcattttttaatacgttgtggttaatataataatatctatacaa--taatgtttgcagcgtggaactccttgggctgatggaactgct |
35535361 |
T |
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| Q |
291 |
gcaatatctcaatgtgctataaatccaggagaaacttttcaatacaaattcgaagttgacaaggtgattaatgaatttcctcctcttcctgtttccatat |
390 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35535362 |
gcaatatctcagtgtgctataaatccaggagaaacttttcaatacaaattcgaagttgacaaggtgattaatgaatttcctcctcttcctgtttccatat |
35535461 |
T |
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| Q |
391 |
tcatgtttctcttttgtgcattgcaattagtggcatttcttcatgtttctcttttgttgttttgtttccgtgtgtannnnnnnnncctttcaaatagttt |
490 |
Q |
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| T |
35535462 |
tcatgtttctcttttgtgcattgc-attagtggtatttcttcatgtttctcttttgttgttttgtttccgtgtgtatttttttttcctttcaaatagttt |
35535560 |
T |
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| Q |
491 |
catggcataactcacatacaccgagtgcccgtaagtaagaaat |
533 |
Q |
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| T |
35535561 |
catggcataactcacatacaccgagtgcccgtaagtaagaaat |
35535603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 35522409 - 35522572
Alignment:
| Q |
1 |
agagcatgttgtgatgggaatcaatggtcagtttcctggcccaactattatagctgatgttggtgacacccttgtcattaatgtcaccaacaagctttct |
100 |
Q |
| |
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||||||||||||||||||||||||||| || ||||| ||||||||||||| |||||| |||||||||||||||| |||| |||||||||||||| | |
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| T |
35522409 |
agagcatgttgtgatgggaatcaatggccaatttccaggcccaactattaaagctgaagttggtgacacccttgacattgcactcaccaacaagcttcat |
35522508 |
T |
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| Q |
101 |
actgaaggaactgttattcactggcatggaatcagacaggtaaattttctttctcttcttctag |
164 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35522509 |
acagagggaactgttattcactggcatggaatcagacaggtaaattttctttctcttattctag |
35522572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 250 - 367
Target Start/End: Original strand, 35505557 - 35505674
Alignment:
| Q |
250 |
aatgtttgcagcgtggaactccttgggctgatggaactgctgcaatatctcaatgtgctataaatccaggagaaacttttcaatacaaattcgaagttga |
349 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35505557 |
aatgtttgcagtttggaactccttgggctgatggaactgctgcaatatctcaatgtgctataaatccaggagaaacttttcaatacaaattcaaagttga |
35505656 |
T |
|
| Q |
350 |
caaggtgattaatgaatt |
367 |
Q |
| |
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|| ||| |||||| |||| |
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| T |
35505657 |
cagggtaattaattaatt |
35505674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 35505346 - 35505491
Alignment:
| Q |
1 |
agagcatgttgtgatgggaatcaatggtcagtttcctggcccaactattatagctgatgttggtgacacccttgtcattaatgtcaccaacaagctttct |
100 |
Q |
| |
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||||||||||||||||||||||||||| || ||||| ||||||||||||| |||||| ||||||||||| ||||| ||| | ||||||||||||| | |
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| T |
35505346 |
agagcatgttgtgatgggaatcaatggccaatttccaggcccaactattagagctgaagttggtgacactcttgttattgacctcaccaacaagctccat |
35505445 |
T |
|
| Q |
101 |
actgaaggaactgttattcactggcatggaatcagacaggtaaatt |
146 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
35505446 |
acagagggaactgttattcactggcatggaatcagacaggtaaatt |
35505491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 263 - 367
Target Start/End: Original strand, 35523035 - 35523139
Alignment:
| Q |
263 |
tggaactccttgggctgatggaactgctgcaatatctcaatgtgctataaatccaggagaaacttttcaatacaaattcgaagttgacaaggtgattaat |
362 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||| |||| ||||||| ||| |||||| |
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| T |
35523035 |
tggaactccttgggctgatggaactgcagcaatctctcagtgtgctataaatccaggagaaacttttcattacagattcattgttgacagggtaattaat |
35523134 |
T |
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| Q |
363 |
gaatt |
367 |
Q |
| |
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|||| |
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|
| T |
35523135 |
taatt |
35523139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 1833899 - 1833859
Alignment:
| Q |
271 |
cttgggctgatggaactgctgcaatatctcaatgtgctata |
311 |
Q |
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| T |
1833899 |
cttgggctgatggaactgctgcaatatctcggtgtgctata |
1833859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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