View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8943_low_4 (Length: 396)
Name: NF8943_low_4
Description: NF8943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8943_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 37155086 - 37155447
Alignment:
| Q |
1 |
aaactctttcgaacagtctcacaaatgtttatgtaagtagattagctcaaatatgtccatagttaattatcctccttttctagcttaactatcctatagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37155086 |
aaactctttcgaacagtctcacaaatgtttatgtaagtagattagctcaaatatgtccatagttaattatcctccttttctagcttaactatcctatagt |
37155185 |
T |
|
| Q |
101 |
aatttcttaaaagcttttgacttgagtcttgagcagaaggcaggatgctttaatgcaacttatttatgatgccaggatggttgttggtcaacaattcaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37155186 |
aatttcttaaaagcttttgacttgagtcttgagcagaaggcaggaagctttaatgcaacttatttatgatgccaggatggttgttggtcaacaattcaaa |
37155285 |
T |
|
| Q |
201 |
caagctgtacagtggttcaggatgtcacagacttttgttttcactcctatttttcatacatggatgaattaagagaaaatttaaaccctcaagaaaagcc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37155286 |
caagctgtacagtggttcaggatgtcacagacttttgttttcactcctatttttcatacatggatgaattaagagaaaatttaaaccctcaagaaaagcc |
37155385 |
T |
|
| Q |
301 |
atttgatttgatatcaagtaagttgctccttccaaatatatgtttgttagtttgagtatgaaaaaag |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37155386 |
-----atttgatatcaagtaagttgctccttccaaatatatgtttgttagtttgagtatgaaaaaag |
37155447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 37200441 - 37200802
Alignment:
| Q |
1 |
aaactctttcgaacagtctcacaaatgtttatgtaagtagattagctcaaatatgtccatagttaattatcctccttttctagcttaactatcctatagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37200441 |
aaactctttcgaacagtctcacaaatgtttatgtaagtagattagctcaaatatgtccatagttaattatcctccttttctagcttaactatcctatagt |
37200540 |
T |
|
| Q |
101 |
aatttcttaaaagcttttgacttgagtcttgagcagaaggcaggatgctttaatgcaacttatttatgatgccaggatggttgttggtcaacaattcaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37200541 |
aatttcttaaaagcttttgacttgagtcttgagcagaaggcaggaagctttaatgcaacttatttatgatgccaggatggttgttggtcaacaattcaaa |
37200640 |
T |
|
| Q |
201 |
caagctgtacagtggttcaggatgtcacagacttttgttttcactcctatttttcatacatggatgaattaagagaaaatttaaaccctcaagaaaagcc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37200641 |
caagctgtacagtggttcaggatgtcacagacttttgttttcactcctatttttcatacatggatgaattaagagaaaatttaaaccctcaagaaaagcc |
37200740 |
T |
|
| Q |
301 |
atttgatttgatatcaagtaagttgctccttccaaatatatgtttgttagtttgagtatgaaaaaag |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37200741 |
-----atttgatatcaagtaagttgctccttccaaatatatgtttgttagtttgagtatgaaaaaag |
37200802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 22667488 - 22667540
Alignment:
| Q |
1 |
aaactctttcgaacagtctcacaaatgtttatgtaagtagattagctcaaata |
53 |
Q |
| |
|
||||||| || ||||||||||||| || |||||| ||||||| |||||||||| |
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|
| T |
22667488 |
aaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaata |
22667540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 22724127 - 22724179
Alignment:
| Q |
1 |
aaactctttcgaacagtctcacaaatgtttatgtaagtagattagctcaaata |
53 |
Q |
| |
|
||||||| || ||||||||||||| || |||||| ||||||| |||||||||| |
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|
| T |
22724127 |
aaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaata |
22724179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 1017124 - 1017165
Alignment:
| Q |
12 |
aacagtctcacaaatgtttatgtaagtagattagctcaaata |
53 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||| |
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|
| T |
1017124 |
aacagtctcacaagtgtttatgtcagtagattagctcaaata |
1017165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 18628527 - 18628486
Alignment:
| Q |
12 |
aacagtctcacaaatgtttatgtaagtagattagctcaaata |
53 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| |||||||||| |
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|
| T |
18628527 |
aacagtctcacaagtgtttatgtcagtagataagctcaaata |
18628486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 35713283 - 35713324
Alignment:
| Q |
12 |
aacagtctcacaaatgtttatgtaagtagattagctcaaata |
53 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
35713283 |
aacagtctcacaagtgtttatgcaagtagattagctcaaata |
35713324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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