View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8943_low_5 (Length: 376)
Name: NF8943_low_5
Description: NF8943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8943_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 9838096 - 9838453
Alignment:
| Q |
1 |
tgagttaaatttgaaactgataaaggaatgctaccattaaaagaattattggaaaaatcaacaacagttagattcttccaaactgaaaaatctaatggca |
100 |
Q |
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| T |
9838096 |
tgagtcaaatttgaaactgataaaggaatgctaccattaaaagaattgttggaaaaatcaacaacagttagattcttccaaactgaaaaatctaatggca |
9838195 |
T |
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| Q |
101 |
atggaccagaaaacttgttaaatgcaagactcaaattttcaagggctgagagtctactaagagtgtttactggaattgaaccattcaatccaagactttg |
200 |
Q |
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| T |
9838196 |
atggaccagaaaatttgttaaatgcaagactcaaattttcaagagctgagagtctactaagagtgtttactggaattgaaccattcaatccaagactttg |
9838295 |
T |
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| Q |
201 |
tagctgaagagatataactcttgatttttcagtgttgcatgtaactctattccattttttgcacacagaagattttttgttccagttgagatgtgtagag |
300 |
Q |
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| T |
9838296 |
tagctgaagagatataactcttgatttttcagtgttgcaagtaactctattccattttttgcatacagaagattttttgttccagttgagaagtgaagag |
9838395 |
T |
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| Q |
301 |
tggttcatgctgtgcatgaaatcaagcaaagcttgtttatctgctactggttcagctc |
358 |
Q |
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| T |
9838396 |
tggttcattttgtgaaggaaatcaagcaaagcttgtttatctgctgctggttcagctc |
9838453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 41154142 - 41154031
Alignment:
| Q |
9 |
atttgaaactgataaaggaatgctaccattaaaagaattattggaaaaatcaacaacagttagattcttccaaactgaaaaatctaatggcaatggacca |
108 |
Q |
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| T |
41154142 |
atttgaaattgaaatagggatgctaccattaaaagaattgttggaaaaattaacaatagatagattactccaaacagaaaaatccaatggtaatggtccg |
41154043 |
T |
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| Q |
109 |
gaaaacttgtta |
120 |
Q |
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| T |
41154042 |
gaaaacttgtta |
41154031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 41153787 - 41153722
Alignment:
| Q |
292 |
tgtgtagagtggttcatgctgtgcatgaaatcaagcaaagcttgtttatctgctactggttcagct |
357 |
Q |
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| T |
41153787 |
tgtggagagtggtttatgttgtgaaggaaatcaagtaaagcttgtttatcttccaatggttcagct |
41153722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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