View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8943_low_7 (Length: 356)
Name: NF8943_low_7
Description: NF8943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8943_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 71 - 343
Target Start/End: Complemental strand, 1445522 - 1445250
Alignment:
| Q |
71 |
agaactcgcccttcggcgcaaaggagacgaagaatctggaaaagaacgtctgaaacacgacccttaaagtcgagtttcaacgaaccagaagaccggaagc |
170 |
Q |
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| T |
1445522 |
agaactcgcccttctgcgcgaaggagacgaagaatctggaaaagaacctctgaaacacgacccttaaagtcgagtttcaacgaaccagaagaccggaagc |
1445423 |
T |
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| Q |
171 |
acaaaccaccgtctagaaaaactgaaaatagaacaaaccaacacaagccttgtagttgaatggcgacaaagacaagaacgctgacagaaaactattgagg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1445422 |
acaaaccaccgtctagaaaaactgaaaatagaacaaaccaacacaagccttgtagttgaatggcgacaaagacaagaacgctgacagaaaactattgagg |
1445323 |
T |
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| Q |
271 |
ttgtgcaggtaagactggctgccagaagagaaaaggtacaaaacaaagtcccccagcgagaggctcaacacca |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1445322 |
ttgtgcaggtaagactggctgccagaagagaaaaggtacaaaacaaagtcccccagcgagaggctcaacacca |
1445250 |
T |
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