View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8943_low_8 (Length: 335)
Name: NF8943_low_8
Description: NF8943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8943_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 3008865 - 3008549
Alignment:
| Q |
1 |
tttgattttctttacaagtgtctcagctaccgattccatgaccaaagcaacctttactgccgtgcatctttgaccactgacatatcaaaacataaatttc |
100 |
Q |
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| T |
3008865 |
tttgattttctttacaagtgtctcagcaaccgattccatgaccaaagcaacctttactgccgtgcatctttgaccactgacatatcaaaacataaatttc |
3008766 |
T |
|
| Q |
101 |
aatgagaatcttttttatgtataagtcagttctcgtcaataaagttatgaaatcaagaaaatgtggaaatatagcgagaaactacaagtctgcgtatcta |
200 |
Q |
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| T |
3008765 |
aatgagaatcttttttatgtataagtcagttctcgtcaataaagttatgaaatcaagaaaatgtggaaatatagcgagaaactacaagtctgcgtatcta |
3008666 |
T |
|
| Q |
201 |
attgacatggtactatatatgtgctactgttacctgtatgagaaccctcctttcacaatgttagcagctaccaaatccaagtcagcatcttcaagaacaa |
300 |
Q |
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| T |
3008665 |
aatgacatggtactatatatgtgctactgttacctgtatgagaaccctcctttcacaatgttagcagctaccaaatccaagtcagcatcttcaagaacaa |
3008566 |
T |
|
| Q |
301 |
tgcaagcatcttttcca |
317 |
Q |
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||||||||||||||||| |
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| T |
3008565 |
tgcaagcatcttttcca |
3008549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 54726042 - 54726126
Alignment:
| Q |
232 |
acctgtatgagaaccctcctttcacaatgttagcagctaccaaatccaagtcagcatcttcaagaacaatgcaagcatcttttcc |
316 |
Q |
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|||||||||| || |||||||| | |||||| ||||| |||||||| | ||||||||||||||| |||||||||||||||||||| |
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| T |
54726042 |
acctgtatgaaaaacctccttttataatgtttgcagcaaccaaatcaaggtcagcatcttcaagtacaatgcaagcatcttttcc |
54726126 |
T |
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