View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8944_low_1 (Length: 574)
Name: NF8944_low_1
Description: NF8944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8944_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 8 - 559
Target Start/End: Complemental strand, 25098051 - 25097498
Alignment:
| Q |
8 |
aatgtattaatatactaatttaatgctcactttgtcacaatgacaaacacattttcttatttcataaagtattgtcaattattgatatattcatctttaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
25098051 |
aatgtattaatatactaatttaatgctcactttgtcacaatgacaaacacattttcttatttcataaagtattatcaattattgatatactcatctttaa |
25097952 |
T |
|
| Q |
108 |
cataaatgcaaaggaaatatattgacatgcaagatgcacacaaacaaacacaccataatagaatgaaagcaaaatattaatga-tgtataaatgatctag |
206 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25097951 |
cataaatgcaaaggaaatatattgacttgcaagatgcacacaaacaaacacactataatagaatgaaagcaaaatattaatggctgtataaatgatctag |
25097852 |
T |
|
| Q |
207 |
taaaaaatggttatgaaaatgatgattgatattagaatttgagttgaatctaaactctaatcgaatccttgtgaaaccgccttcaaaagtgaagactttt |
306 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25097851 |
taaaaaatggttgtaaaaatgatgattgatattagaatttgagttgaatctaaactctaatcgaatccttgtgaaatcgccttcaaaagtgaagactttt |
25097752 |
T |
|
| Q |
307 |
atccacttataacttatattaaaatcttatcttatt-taaggtgaaattattgacactcactcgcgcttaagactaaatatttaatgcacaacatgaatg |
405 |
Q |
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||| ||||||| |||||||| ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25097751 |
atcgacttatagcttatatttaaatcttatctcatactaaggtgaaactattgacactcactcgcgcttaagactaaatatctaatgcacaacatgaatg |
25097652 |
T |
|
| Q |
406 |
acttggtagtggtggtctaatagcaaaaaactcaacgactaacatcttaatatttgagttagatctataactcaacatttacaaaatcaattagcaagat |
505 |
Q |
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|| | ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25097651 |
acccgatagtggtggtctaatagcaaataactcaacgactaacatcttaaaatttgagttagatctataactcaacatttacaaaatcaattagtaagat |
25097552 |
T |
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| Q |
506 |
gatgattgctccacacttataaacttatattcagaccttcatcttactccaaca |
559 |
Q |
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|||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |
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| T |
25097551 |
gatgattgctccacccttataaacttatgttcagacctttatcttactccaaca |
25097498 |
T |
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