View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8944_low_4 (Length: 352)
Name: NF8944_low_4
Description: NF8944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8944_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 20222909 - 20222576
Alignment:
| Q |
1 |
atatttcatgagtgacaatgaatgtgatgttgatgatgttccaaaagaatctcatcggagttgtttgcggttacaactctttgacttcacgtagttactt |
100 |
Q |
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| T |
20222909 |
atatttcatgagtgacaatgaatgttatgttgatgatgttccaaaagaatcttatcggagttgtctgcggttacaactctttgactccacgtagttattt |
20222810 |
T |
|
| Q |
101 |
atatctggattgtacgatcgtgatcatttagtttagatttaaaaatcggtatgttaaattcgaaaaaatcaatatttgattaaaatcaagaatgtgtaat |
200 |
Q |
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| T |
20222809 |
atatctggattgtacgatcgtgatcatttagtttagatttaaaaatcggcatgttaaattcaaaaaaatcaatatttgattaaaatcaagaatgtgtaat |
20222710 |
T |
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| Q |
201 |
cttgattgaactattgagattgtacttattgtgtagtgtgtacacaatctatatcctaaagaaacaaatttgtcaaactcttttcttctttatttataaa |
300 |
Q |
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| T |
20222709 |
cttgattgaactattgagattgtacttatggtgtagtgtgtacacaatctatatcctaaagaaacaaatttgtcaaactcttttcttctttatttatgaa |
20222610 |
T |
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| Q |
301 |
aaagtctgccggtctttaaaccatatggccaagg |
334 |
Q |
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| T |
20222609 |
aaagtctgccggtctttaaaccatatggccaagg |
20222576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 25330009 - 25329918
Alignment:
| Q |
132 |
tttagatttaaaaatcggtatgttaaattcgaaaaaatcaatatttgattaaaatcaagaatgtgtaatcttgattgaactattgagattgt |
223 |
Q |
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||||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||| |||||| || ||| |||| ||||||| |
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| T |
25330009 |
tttagatttaaaatccattatgttaaattcaaaaaaatcaaaatttgattaaaatcaagaatgtgcaatctttatcgaattattaagattgt |
25329918 |
T |
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