View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8945_low_3 (Length: 319)
Name: NF8945_low_3
Description: NF8945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8945_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 7610169 - 7610457
Alignment:
| Q |
16 |
acttaattaaatccttttatgtttgacactgtcaatttttactgttaaaaatcctcaccaaa------------ccataacacattaaacattgtaatat |
103 |
Q |
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| T |
7610169 |
acttaattaaatccttttatgtttgacactgtcaatttttactgttaaaaatcctcaccaaaaacaacacttcgccataacacattaaacattgtaatat |
7610268 |
T |
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| Q |
104 |
aagtgcaccctcgnnnnnnnnnccttgcaaccgatttagcaagcttcccagattagttaggaactatcatttctttttattgtgataccatcaactcatt |
203 |
Q |
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| T |
7610269 |
aagtgcaccctcgtttttttttccttgcaaccgatttagcaagcttcccgcaat--taaggaactatcatttctttttattgtgataccatcaactcatt |
7610366 |
T |
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| Q |
204 |
atttctcttcctaagttgaatatgatgcagccttccaccagcaagat--nnnnnnngtaaaacacagacaattggcaaccaccacagtctata |
294 |
Q |
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| T |
7610367 |
atttctcttc--tagttgaatatgatgcagccttccaccagcaagataaaaaaaaagtaaaacacagacaattggcaaccaccacagtctata |
7610457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 303
Target Start/End: Original strand, 9314593 - 9314691
Alignment:
| Q |
204 |
atttctcttcctaagttgaatatgatgcagccttccaccagcaagatnnnnnnngtaaaacacagacaattggcaaccaccacagtctataccaaagtac |
303 |
Q |
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| T |
9314593 |
atttctcttcctaagttgaatatgatgcagcctaccaccagcaatat-aaaaaagtaaaacatcgacaattggcagccaccatagtctatatccaagtac |
9314691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 294
Target Start/End: Complemental strand, 9063122 - 9063031
Alignment:
| Q |
202 |
ttatttctcttcctaagttgaatatgatgcagccttccaccagcaagatnnnnnnngtaaaacacagacaattggcaaccaccacagtctata |
294 |
Q |
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| T |
9063122 |
ttatatctcttcctaagttgaatatgatgcagcctaccaccagcaatat-aaaaaagtaaaacattgacaattgacaaccaccacggtctata |
9063031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 8575581 - 8575545
Alignment:
| Q |
207 |
tctcttcctaagttgaatatgatgcagccttccacca |
243 |
Q |
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| T |
8575581 |
tctcttcctaagttgaatataatgcagcctaccacca |
8575545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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