View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8945_low_4 (Length: 285)
Name: NF8945_low_4
Description: NF8945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8945_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 3009099 - 3008842
Alignment:
| Q |
17 |
caaaactggtccaaatggttcttcccacgatatcctcatatcggaacgaacattatccaacaaaaggggccatatgagatttccttcccttctgtattct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3009099 |
caaaactggtccaaatggttcttcccacgatatcctcatatcggaacgaacattatccaacaaaagtggccatatgagatttccttcccttctgtattct |
3009000 |
T |
|
| Q |
117 |
tggcaaaatgttgctcctttcttcttagcatccattactaacccttcaataaagttagcagaggattctgtgatgaccggtgtgatgtcgcagtcatcct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3008999 |
tggcaaaatgttgctcctttcttcttagcatccattactaacccttcaataaagttagcagaggattctgtgatgaccggtgtgatgtcgcagtcatcct |
3008900 |
T |
|
| Q |
217 |
caggaggaccgacagttaatttggccactttatctttgattttctttacaagtgtctc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3008899 |
caggaggaccgacagttaatttggccactttatctttgattttctttacaagtgtctc |
3008842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 54725244 - 54725447
Alignment:
| Q |
17 |
caaaactggtccaaatggttcttcccacgatatcctcatatcggaacgaacattatccaacaaaaggggccatatgagatttccttcccttctgtattct |
116 |
Q |
| |
|
|||||||||||||||||| || ||||| | || ||||| || | | |||||||||||| || | ||||| || ||||| ||||| || |||||||| |
|
|
| T |
54725244 |
caaaactggtccaaatggctcctcccaagcaattctcatgtctggcctaacattatccaataacaaaggccaaataagattcccttctctcttgtattct |
54725343 |
T |
|
| Q |
117 |
tggcaaaatgttgctcctttcttcttagcatccattactaacccttcaataaagttagcagaggattctgtgatgaccggtgtgatgtcgcagtcatcct |
216 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| | || || |||||||| || ||||| || ||||||| | || || ||||| || |||||||||| |
|
|
| T |
54725344 |
tggcagaatgttgctcctttctgcttagcatcattcaccaagccttcaatgaaattagctgatgattctgatacaactggggtgatatcacagtcatcct |
54725443 |
T |
|
| Q |
217 |
cagg |
220 |
Q |
| |
|
|||| |
|
|
| T |
54725444 |
cagg |
54725447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University