View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8946_low_12 (Length: 267)
Name: NF8946_low_12
Description: NF8946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8946_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 52391505 - 52391760
Alignment:
| Q |
1 |
tcattcaatggctttctacctaaccgaccattaacatatgaatcatcgggtccagcattattgtactccagatcattatcagcaatagcagatgaatatt |
100 |
Q |
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| T |
52391505 |
tcattcaatggctttctacctaaccgaccattaacatatgaatcatcgggtccagcattattgtactccagatcattatcagcaatagcagatgaatatt |
52391604 |
T |
|
| Q |
101 |
ttgaccttgcgccacggtactgttgatttggaccattgtaaaattcaccagaatattcacgctcagattcccagtctccacgacctcggctattaactct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52391605 |
ttgaccttgcgccacggtactgttgatttggaccattgtaaaattcaccagaatattcacgctcagattcccagtcaccacgacctcggctattaactct |
52391704 |
T |
|
| Q |
201 |
tcctctaccacgcccaaaattcaatctagaatttctagtggacatgtcttgatgtc |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52391705 |
tcctctaccacgcccaaaattcaatctagaatttctagtggacatgtcttgatgtc |
52391760 |
T |
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