View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8946_low_16 (Length: 259)
Name: NF8946_low_16
Description: NF8946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8946_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 40903825 - 40903603
Alignment:
| Q |
19 |
acaaaggaaaacaagaaaaccatattaaatcactgcaatgcaaaacaaaacatgaaaacctaagaagaattttacgtaaattaacttttgtgtaagaaaa |
118 |
Q |
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| T |
40903825 |
acaaaggaaaacaagaaaaccatattaaatcactgcaatgcaaaacagaacatgaaaacctaagaagaattttacataaattaacttttgtgtaagaaaa |
40903726 |
T |
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| Q |
119 |
ctaagcacccgccgtgttatgtaatcnnnnnnntaccttagcttcccagaagtaaacatcagtgtgacaaagggaggtgaagagtatcttgagacggact |
218 |
Q |
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| T |
40903725 |
ctaagcacccgccgtgttatgtaatcaaaaaaataccttagcttcccagaagtaaacatcagtgtgacaaagggaggtgaagagtatcttgagacggact |
40903626 |
T |
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| Q |
219 |
tcaccggcctgcggtggcgccac |
241 |
Q |
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| T |
40903625 |
tcaccggcctgcggtggagccac |
40903603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 40880091 - 40880002
Alignment:
| Q |
152 |
taccttagcttcccagaagtaaacatcagtgtgacaaagggaggtgaagagtatcttgagacggacttcaccggcctgcggtggcgccac |
241 |
Q |
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| T |
40880091 |
taccttagcttcccagaagtaaacatcagtgtgacaaagagaggtgaagagtatcttgagacggacttcaccggcctgcggtggcgccac |
40880002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 40899016 - 40898927
Alignment:
| Q |
152 |
taccttagcttcccagaagtaaacatcagtgtgacaaagggaggtgaagagtatcttgagacggacttcaccggcctgcggtggcgccac |
241 |
Q |
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| T |
40899016 |
taccttagcttcccagaagtaaacatcggtgtgacaaagggaggtgaagagtatcttgagacggacttcaccggcctgcggtggtgccac |
40898927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 40899294 - 40899248
Alignment:
| Q |
33 |
gaaaaccatattaaatcactgcaatgcaaaacaaaacatgaaaacct |
79 |
Q |
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| T |
40899294 |
gaaaaccatattaaatcactgcaatgcacaacagaacatcaaaacct |
40899248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 40899188 - 40899125
Alignment:
| Q |
81 |
agaagaattttacgtaaattaacttttgtgtaagaaaactaagca-cccgccgtgttatgtaatc |
144 |
Q |
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| T |
40899188 |
agaagaattttacataaattaacttttttgttag-aaactaagcaccccaacgtgttatgtaatc |
40899125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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