View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8946_low_3 (Length: 871)

Name: NF8946_low_3
Description: NF8946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8946_low_3
NF8946_low_3
[»] chr6 (4 HSPs)
chr6 (670-855)||(13609247-13609432)
chr6 (416-467)||(15347490-15347544)
chr6 (416-467)||(30710302-30710355)
chr6 (415-467)||(15348219-15348274)
[»] chr4 (8 HSPs)
chr4 (654-838)||(31245180-31245364)
chr4 (314-467)||(11147803-11147959)
chr4 (387-467)||(11148089-11148173)
chr4 (15-60)||(5743221-5743266)
chr4 (416-467)||(31632440-31632492)
chr4 (413-467)||(49682052-49682108)
chr4 (193-236)||(11148037-11148080)
chr4 (410-467)||(31633629-31633689)
[»] chr5 (7 HSPs)
chr5 (654-854)||(17599110-17599310)
chr5 (367-472)||(21012383-21012492)
chr5 (15-60)||(42783975-42784019)
chr5 (416-467)||(5347781-5347835)
chr5 (414-467)||(36681095-36681150)
chr5 (416-467)||(36681874-36681926)
chr5 (416-454)||(7491325-7491363)
[»] chr7 (11 HSPs)
chr7 (314-500)||(32390810-32391004)
chr7 (654-810)||(14724459-14724615)
chr7 (314-476)||(32389978-32390141)
chr7 (318-454)||(24240640-24240778)
chr7 (410-445)||(3987253-3987288)
chr7 (380-445)||(3346031-3346096)
chr7 (193-236)||(23256475-23256518)
chr7 (417-473)||(25635000-25635058)
chr7 (193-236)||(32390221-32390264)
chr7 (193-236)||(32390688-32390731)
chr7 (387-443)||(41589267-41589324)
[»] chr3 (14 HSPs)
chr3 (328-471)||(50381907-50382054)
chr3 (326-476)||(50382671-50382826)
chr3 (380-445)||(31799553-31799619)
chr3 (15-60)||(5735947-5735992)
chr3 (15-60)||(5773059-5773104)
chr3 (72-137)||(5736013-5736081)
chr3 (72-137)||(5773125-5773193)
chr3 (355-444)||(31800325-31800415)
chr3 (410-444)||(42078649-42078683)
chr3 (413-467)||(35942156-35942212)
chr3 (410-467)||(28539373-28539432)
chr3 (416-467)||(50838282-50838336)
chr3 (416-467)||(54560091-54560145)
chr3 (416-467)||(1577534-1577587)
[»] scaffold0169 (2 HSPs)
scaffold0169 (314-445)||(26767-26898)
scaffold0169 (368-468)||(27376-27478)
[»] chr8 (6 HSPs)
chr8 (326-445)||(21190126-21190246)
chr8 (15-60)||(4708150-4708195)
chr8 (410-467)||(20112293-20112353)
chr8 (416-467)||(14790730-14790784)
chr8 (354-445)||(26544607-26544701)
chr8 (416-445)||(45105526-45105555)
[»] scaffold0020 (1 HSPs)
scaffold0020 (314-461)||(2012-2163)
[»] chr2 (8 HSPs)
chr2 (314-467)||(45114810-45114970)
chr2 (15-60)||(27560634-27560679)
chr2 (15-60)||(37457075-37457120)
chr2 (15-53)||(810344-810382)
chr2 (416-467)||(4592685-4592739)
chr2 (410-467)||(33002935-33002994)
chr2 (193-236)||(45114667-45114710)
chr2 (72-139)||(27560543-27560612)
[»] chr1 (11 HSPs)
chr1 (15-60)||(47052198-47052243)
chr1 (410-467)||(45575987-45576046)
chr1 (416-467)||(27585348-27585401)
chr1 (410-467)||(36475331-36475391)
chr1 (15-60)||(19658157-19658201)
chr1 (413-467)||(27586005-27586061)
chr1 (416-467)||(36475994-36476048)
chr1 (416-467)||(47445798-47445852)
chr1 (416-462)||(47445051-47445100)
chr1 (352-445)||(787906-788000)
chr1 (419-471)||(24646463-24646518)
[»] scaffold0102 (1 HSPs)
scaffold0102 (416-450)||(33167-33201)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 1e-59; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 670 - 855
Target Start/End: Original strand, 13609247 - 13609432
Alignment:
Q  670 ggcccaattggagtacaaaagcaacttctttatcaaactctaaatgaagaaaatcttcagatatgcaatctttctatggcatctaatttgattcgaacta 769  Q
    |||||||||| ||| || ||||||||||||| |||||||||||||||||| ||||| |||||||| |||| |||||||| |||||||||||||| |||||    
T  13609247 ggcccaattgaagtgcagaagcaacttctttgtcaaactctaaatgaagataatctccagatatggaatcattctatgggatctaatttgattcaaacta 13609346  T
Q  770 ggctatgtgagataaaatcccttgtggttcttgataatgttgatgaagttgaacagctggataaattggacataaaacgagaatgt 855  Q
    |||||||| | |||||||||||||| |||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||||||||    
T  13609347 ggctatgtcaaataaaatcccttgtagttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgt 13609432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 15347544 - 15347490
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 467  Q
    ||||||||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  15347544 gggggtaattgactaacgtttgataatttcaggggggtttttgaagtttcttaaa 15347490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 416 - 467
Target Start/End: Original strand, 30710302 - 30710355
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttc--gggggttttgaagtttcttaaa 467  Q
    |||||||||||||||||||||| |||||||  |||| |||||||||||| ||||    
T  30710302 gggggtaattgactaacgtttggcaatttcagggggtttttgaagtttcctaaa 30710355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 467
Target Start/End: Original strand, 15348219 - 15348274
Alignment:
Q  415 agggggtaattgactaacgtttgacaatttcggggg---ttttgaagtttcttaaa 467  Q
    ||||||||||||||||||||||| ||||||| ||||   |||||||||||| ||||    
T  15348219 agggggtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaa 15348274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 4e-59; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 654 - 838
Target Start/End: Original strand, 31245180 - 31245364
Alignment:
Q  654 aatttatggagacgacggcccaattggagtacaaaagcaacttctttatcaaactctaaatgaagaaaatcttcagatatgcaatctttctatggcatct 753  Q
    |||||| |||||| | ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  31245180 aatttacggagaccatggcccgattggagtgcaaaagcaacttctttgtcaaactctaaatgaagaaaatcttcagatatgcaatcttttcatggcatct 31245279  T
Q  754 aatttgattcgaactaggctatgtgagataaaatcccttgtggttcttgataatgttgatgaagttgaacagctggataaattgg 838  Q
    ||| |||| || |||||||||||| | |||||||||||| | |||||||||||||||||| |||||||||| |||||||||||||    
T  31245280 aatctgatacgcactaggctatgtcaaataaaatcccttatagttcttgataatgttgatcaagttgaacaactggataaattgg 31245364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 314 - 467
Target Start/End: Complemental strand, 11147959 - 11147803
Alignment:
Q  314 tcatttaccccactatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaaagc-aac 412  Q
    ||||||||||| |||||||||| ||||||||||| |||| ||||||||| ||  ||||||||||||||||| ||| ||||||||||||| |||| | |||    
T  11147959 tcatttacccc-ctatgacgtgacataaaattcaaccaatgtggaggtgccacatgtacatttacttgccatgtc-tatggtttaacagccaaaacaaac 11147862  T
Q  413 gga-gggggtaattgactaacgtttgacaatttcggggg---ttttgaagtttcttaaa 467  Q
    ||| ||||||||||||||||||||||||||||||  |||   |||||||||||||||||    
T  11147861 ggaggggggtaattgactaacgtttgacaatttcaagggaatttttgaagtttcttaaa 11147803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 387 - 467
Target Start/End: Original strand, 11148089 - 11148173
Alignment:
Q  387 tcatatggtttaacagacaaagcaa-cggagggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 467  Q
    |||||||||||||||  |||| ||| ||||||||||||||||||||| ||||||||||||    ||| |||||||||||||||||    
T  11148089 tcatatggtttaacaaccaaaacaaacggagggggtaattgactaacatttgacaatttcataagggtttttgaagtttcttaaa 11148173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 5743221 - 5743266
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  5743221 cagagagctaacgggagtgataggagaaaggaaagggaaagttatg 5743266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 31632492 - 31632440
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttcgg-gggttttgaagtttcttaaa 467  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||||||||    
T  31632492 gggggcaattgactaacgtttgacaatttaggagggttttgaagtttcttaaa 31632440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 467
Target Start/End: Original strand, 49682052 - 49682108
Alignment:
Q  413 ggagggggtaattgactaacgtttgacaatttcggggg--ttttgaagtttcttaaa 467  Q
    ||||||||||||||||||||| |||| |||||| ||||  |||||||||||||||||    
T  49682052 ggagggggtaattgactaacgattgataatttcaggggatttttgaagtttcttaaa 49682108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 11148080 - 11148037
Alignment:
Q  193 ttgttgatagggtgttgtttcttaaaacaatttctgtatttttt 236  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  11148080 ttgttgataggttgttgtttcttaaaacaaattctgcatttttt 11148037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 410 - 467
Target Start/End: Original strand, 31633629 - 31633689
Alignment:
Q  410 aacggagggggtaattgactaacgtttgacaatt---tcgggggttttgaagtttcttaaa 467  Q
    ||||||||||||||| |||||| |||||||||||   | |||| |||||||||||||||||    
T  31633629 aacggagggggtaatggactaatgtttgacaattttatgggggtttttgaagtttcttaaa 31633689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 654 - 854
Target Start/End: Complemental strand, 17599310 - 17599110
Alignment:
Q  654 aatttatggagacgacggcccaattggagtacaaaagcaacttctttatcaaactctaaatgaagaaaatcttcagatatgcaatctttctatggcatct 753  Q
    ||||||||||||| | |||||||  | ||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17599310 aatttatggagactatggcccaaccgaagtgcaaaagaaacttctttgtcaaactctaaatgaagaaaatcttcagatatgcaatctttctatgggatct 17599211  T
Q  754 aatttgattcgaactaggctatgtgagataaaatcccttgtggttcttgataatgttgatgaagttgaacagctggataaattggacataaaacgagaat 853  Q
    |||||||||||||||| ||||||| | |||||||| |||   ||||||||||||||| || |||||||||| ||||| ||||||| ||| ||| ||||||    
T  17599210 aatttgattcgaactacgctatgtcaaataaaatctcttactgttcttgataatgttcatcaagttgaacaactggaaaaattggccatgaaatgagaat 17599111  T
Q  854 g 854  Q
    |    
T  17599110 g 17599110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 367 - 472
Target Start/End: Original strand, 21012383 - 21012492
Alignment:
Q  367 gtgtacatttacttgccacgtcatatggtttaacagacaaagcaa-cggagggggtaattgactaacgtttgacaatttc---gggggttttgaagtttc 462  Q
    ||||||| |||  |||||| ||||||||| ||| || |||| ||| | |||||||||||||| |||||||||||||||||    ||||||||||||||||    
T  21012383 gtgtacagttaactgccacatcatatggtgtaatagccaaaacaaacagagggggtaattgattaacgtttgacaatttcaagtggggttttgaagtttc 21012482  T
Q  463 ttaaatgtcg 472  Q
    ||||||||||    
T  21012483 ttaaatgtcg 21012492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 42784019 - 42783975
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||    
T  42784019 cagagagctaacggaagtga-aggagaatggaaagggaaagttatg 42783975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 5347835 - 5347781
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 467  Q
    ||||||||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  5347835 gggggtaattgactaacgtttgataatttcaggggggtttttgaagtttcttaaa 5347781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 414 - 467
Target Start/End: Complemental strand, 36681150 - 36681095
Alignment:
Q  414 gagggggtaattgactaacgtttgacaatttc--gggggttttgaagtttcttaaa 467  Q
    ||||||||||||||||||||||||||||||||   ||| ||||||||||| |||||    
T  36681150 gagggggtaattgactaacgtttgacaatttcaaagggtttttgaagttttttaaa 36681095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 416 - 467
Target Start/End: Original strand, 36681874 - 36681926
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttc-gggggttttgaagtttcttaaa 467  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||| |||||    
T  36681874 gggggtaattgactaacgtttgacaatttcatgggggtttgaagttttttaaa 36681926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 416 - 454
Target Start/End: Complemental strand, 7491363 - 7491325
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttcgggggtttt 454  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  7491363 gggggtaattgactaacgtttcacaatttcaggggtttt 7491325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 9e-51; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 314 - 500
Target Start/End: Original strand, 32390810 - 32391004
Alignment:
Q  314 tcatttaccccactatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaaagc-aac 412  Q
    ||||||||||| |||||||||||||||||||||| |||| ||||||||| || |||||||||||||||||||||||||||||||||||| |||| | |||    
T  32390810 tcatttacccccctatgacgtggcataaaattcaaccaatgtggaggtgccacgtgtacatttacttgccacgtcatatggtttaacagtcaaaacaaac 32390909  T
Q  413 gga-gggggtaattgactaacgtttgacaatttcggggg--ttttgaagtttcttaaatgtcggggg----ttaacgaatgcttcaatttcgggg 500  Q
    ||| ||||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||| ||||    || ||||||||| |||||||||||    
T  32390910 ggaggggggtaattgactaacgtttgataatttcaggggatttttgaagtttcttaaatgtcaggggggttttgacgaatgctacaatttcgggg 32391004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 654 - 810
Target Start/End: Original strand, 14724459 - 14724615
Alignment:
Q  654 aatttatggagacgacggcccaattggagtacaaaagcaacttctttatcaaactctaaatgaagaaaatcttcagatatgcaatctttctatggcatct 753  Q
    ||||||||||||| | |||||||  | ||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  14724459 aatttatggagactatggcccaaccgaagtgcaaaagcaacttctttgtcaaactctaaacgaagaaaatcttcagatatgcaatctttctatgggatct 14724558  T
Q  754 aatttgattcgaactaggctatgtgagataaaatcccttgtggttcttgataatgtt 810  Q
    |||||||||||||||| ||||||| | |||||||| ||||  |||||||||||||||    
T  14724559 aatttgattcgaactacgctatgtcaaataaaatctcttgaagttcttgataatgtt 14724615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 314 - 476
Target Start/End: Complemental strand, 32390141 - 32389978
Alignment:
Q  314 tcatttaccccactatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagac-aaagcaac 412  Q
    ||||||||||| ||||||||| |||||||||||||| || || ||||||||| |||||||||||||||||||||||||||||||||||  | |||  ||     
T  32390141 tcatttacccctctatgacgtagcataaaattcagctaatgtagaggtgtcacgtgtacatttacttgccacgtcatatggtttaacaaccaaaataaat 32390042  T
Q  413 ggagggggtaattgactaacgtttgacaatttcgggggttttgaagtttcttaaatgtcggggg 476  Q
    ||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||    
T  32390041 ggaggggataattgactaacgtttgacaatttcaggggttttaaagtttcttaaatatcggggg 32389978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 318 - 454
Target Start/End: Complemental strand, 24240778 - 24240640
Alignment:
Q  318 ttaccccactatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaaagca-acgga- 415  Q
    ||||||| ||||||||||||||||  ||||| | || |||||||| || ||||||| ||| ||||||||||| | ||| |||||| |||| || || ||     
T  24240778 ttaccccgctatgacgtggcataactttcagtccacatggaggtgccacgtgtacagttaattgccacgtcacagggtgtaacagccaaaacagacagag 24240679  T
Q  416 gggggtaattgactaacgtttgacaatttcgggggtttt 454  Q
    ||||||||||||||||| ||| |||||||| ||||||||    
T  24240678 gggggtaattgactaacatttaacaatttcaggggtttt 24240640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 410 - 445
Target Start/End: Original strand, 3987253 - 3987288
Alignment:
Q  410 aacggagggggtaattgactaacgtttgacaatttc 445  Q
    ||||||||||||||||||||||||||||||||||||    
T  3987253 aacggagggggtaattgactaacgtttgacaatttc 3987288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 445
Target Start/End: Complemental strand, 3346096 - 3346031
Alignment:
Q  380 tgccacgtcatatggtttaacagacaaagcaacggagggggtaattgactaacgtttgacaatttc 445  Q
    |||||||||| | | ||||||| | |||  ||||||||| ||||||||||||||||||||||||||    
T  3346096 tgccacgtcacaagatttaacaaaaaaaaaaacggagggtgtaattgactaacgtttgacaatttc 3346031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 23256518 - 23256475
Alignment:
Q  193 ttgttgatagggtgttgtttcttaaaacaatttctgtatttttt 236  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  23256518 ttgttgataggttgttgtttcttaaaacaaattctgcatttttt 23256475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 417 - 473
Target Start/End: Original strand, 25635000 - 25635058
Alignment:
Q  417 ggggtaattgactaacgtttgacaatttcg--ggggttttgaagtttcttaaatgtcgg 473  Q
    |||||||| || |||||||||||||||||   ||| |||||||||||||||||||||||    
T  25635000 ggggtaatcgattaacgtttgacaatttcaaagggattttgaagtttcttaaatgtcgg 25635058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 32390264 - 32390221
Alignment:
Q  193 ttgttgatagggtgttgtttcttaaaacaatttctgtatttttt 236  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  32390264 ttgttgataggttgttgtttcttaaaacaaattctgcatttttt 32390221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 32390688 - 32390731
Alignment:
Q  193 ttgttgatagggtgttgtttcttaaaacaatttctgtatttttt 236  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  32390688 ttgttgataggttgttgtttcttaaaacaaattctgcatttttt 32390731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 41589324 - 41589267
Alignment:
Q  387 tcatatggtttaacagacaaagcaa-cggagggggtaattgactaacgtttgacaatt 443  Q
    ||||||| |||||||| |||| ||| | ||||||||||||||||||||||||| ||||    
T  41589324 tcatatgatttaacagccaaaacaaacagagggggtaattgactaacgtttgataatt 41589267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 3e-35; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 328 - 471
Target Start/End: Complemental strand, 50382054 - 50381907
Alignment:
Q  328 atgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaaagc-aacgga-gggggtaatt 425  Q
    |||||||| |||||||||||||||| ||||||||| ||  |||||||||| |||||||||||||||||||||||| |||| | ||| || ||||||||||    
T  50382054 atgacgtgacataaaattcagccaatgtggaggtgccacatgtacatttatttgccacgtcatatggtttaacagccaaaacaaacagaggggggtaatt 50381955  T
Q  426 gactaacgtttgacaatttc--gggggttttgaagtttcttaaatgtc 471  Q
    ||||||||||||||||||||   |||| ||||||||||||||||||||    
T  50381954 gactaacgtttgacaatttcagaggggatttgaagtttcttaaatgtc 50381907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 326 - 476
Target Start/End: Original strand, 50382671 - 50382826
Alignment:
Q  326 ctatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaaagcaacgga--gggggtaa 423  Q
    |||||| |||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||||||||||| |  |||| |||  ||  ||||||||    
T  50382671 ctatgatgtggcataaaattcagccaatgtggaggtgccacgtgtacatttacttaccacgtcatatggtttaataatcaaaacaaacgaaggggggtaa 50382770  T
Q  424 ttgactaacgtttgacaatttc--gggggt-tttgaagtttcttaaatgtcggggg 476  Q
    |||||||||||||||| |||||  |||||| |||||||||||||||| ||| ||||    
T  50382771 ttgactaacgtttgaccatttcatgggggtgtttgaagtttcttaaaagtcagggg 50382826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 380 - 445
Target Start/End: Complemental strand, 31799619 - 31799553
Alignment:
Q  380 tgccacgtcatatggtttaacagacaaagcaa-cggagggggtaattgactaacgtttgacaatttc 445  Q
    ||||| |||||| |||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||    
T  31799619 tgccatgtcatagggtttaacagtcaaaacaaacggagggggtaattgactaacatttgacaatttc 31799553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 5735947 - 5735992
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||    
T  5735947 cagagagataacgggagtgagaggagaaaggaaagggaaagttatg 5735992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 5773059 - 5773104
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||    
T  5773059 cagagagataacgggagtgagaggagaaaggaaagggaaagttatg 5773104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 5736013 - 5736081
Alignment:
Q  72 cccacgtgagtgtctagtaagttctaca---atctattattattaatacttctcatacttgattacttt 137  Q
    |||||||| |||||||||||||||||||   ||| ||||| ||||||| ||||||||||| ||||||||    
T  5736013 cccacgtgtgtgtctagtaagttctacatatatccattatcattaataattctcatacttaattacttt 5736081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 5773125 - 5773193
Alignment:
Q  72 cccacgtgagtgtctagtaagttctaca---atctattattattaatacttctcatacttgattacttt 137  Q
    |||||||| |||||||||||||||||||   ||| ||||| ||||||| ||||||||||| ||||||||    
T  5773125 cccacgtgtgtgtctagtaagttctacatatatccattatcattaataattctcatacttaattacttt 5773193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 444
Target Start/End: Original strand, 31800325 - 31800415
Alignment:
Q  355 tggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaaagcaa-cggagggggtaattgactaacgtttgacaattt 444  Q
    |||||||||||||| |||| |||  || |||||||||  ||||||||  |||| ||| |||||||||||| |||||||||||| |||||||    
T  31800325 tggaggtgtcatgtatacaattaactgtcacgtcatagcgtttaacaatcaaaacaaacggagggggtaactgactaacgtttcacaattt 31800415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 410 - 444
Target Start/End: Original strand, 42078649 - 42078683
Alignment:
Q  410 aacggagggggtaattgactaacgtttgacaattt 444  Q
    |||||||||||||||||||||||||||||||||||    
T  42078649 aacggagggggtaattgactaacgtttgacaattt 42078683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 467
Target Start/End: Complemental strand, 35942212 - 35942156
Alignment:
Q  413 ggagggggtaattgactaacgtttgacaatttc--gggggttttgaagtttcttaaa 467  Q
    |||||||||| ||||||||||||||||||||||  ||| ||||| ||||||||||||    
T  35942212 ggagggggtagttgactaacgtttgacaatttcaggggagttttaaagtttcttaaa 35942156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 410 - 467
Target Start/End: Original strand, 28539373 - 28539432
Alignment:
Q  410 aacggagggggtaattgactaacgtttgacaattt--cgggggttttgaagtttcttaaa 467  Q
    ||||||| || |||||||||||||||| |||||||   ||||||||||||||||||||||    
T  28539373 aacggagaggataattgactaacgtttaacaattttatgggggttttgaagtttcttaaa 28539432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 416 - 467
Target Start/End: Original strand, 50838282 - 50838336
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttcggggg---ttttgaagtttcttaaa 467  Q
    ||||||||||||||||||||||| |||||| ||||   |||||||||||||||||    
T  50838282 gggggtaattgactaacgtttgataatttcaggggagtttttgaagtttcttaaa 50838336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 54560145 - 54560091
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 467  Q
    ||||||||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  54560145 gggggtaattgactaacgtttgataatttcatgggggtttttgaagtttcttaaa 54560091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 416 - 467
Target Start/End: Original strand, 1577534 - 1577587
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttc--gggggttttgaagtttcttaaa 467  Q
    |||||||||||||||||||||| |||||||  |||| |||||||||||| ||||    
T  1577534 gggggtaattgactaacgtttgtcaatttcagggggtttttgaagtttcctaaa 1577587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 314 - 445
Target Start/End: Complemental strand, 26898 - 26767
Alignment:
Q  314 tcatttaccccactatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagac-aaagcaac 412  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||| ||||||| | |||  |||    
T  26898 tcatttacccc-ctatgacatggcataaaattcagccaatgtggaggtgtcacatgtacatttacttgccacatcatatggattaacagccaaaataaac 26800  T
Q  413 ggagggggtaattgactaacgtttgacaatttc 445  Q
    ||| | |||| ||| ||||||||||||||||||    
T  26799 ggatgtggtagttgtctaacgtttgacaatttc 26767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 368 - 468
Target Start/End: Original strand, 27376 - 27478
Alignment:
Q  368 tgtacatttacttgccacgtcatatggtttaacagacaaagcaa-cggagggggtaattgactaacgtttgacaattt-cgggggttttgaagtttctta 465  Q
    ||||||||||| |||||| |||||||||||||||| |||| ||| ||||||||||||||||||| |||||||||||||  | || |||| ||||||||||    
T  27376 tgtacatttacatgccacatcatatggtttaacagccaaaacaaacggagggggtaattgactatcgtttgacaatttgagaggttttttaagtttctta 27475  T
Q  466 aat 468  Q
    |||    
T  27476 aat 27478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 326 - 445
Target Start/End: Complemental strand, 21190246 - 21190126
Alignment:
Q  326 ctatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaa-agcaacggagggggtaat 424  Q
    ||||||||||||||||||||||||||| ||||||||| ||  || |||||||||  ||||||||||||||||||||| ||| |  || ||||||||||||    
T  21190246 ctatgacgtggcataaaattcagccaatgtggaggtgccacatgcacatttactcaccacgtcatatggtttaacagtcaatacaaaaggagggggtaat 21190147  T
Q  425 tgactaacgtttgacaatttc 445  Q
    |||||||||||||| ||||||    
T  21190146 tgactaacgtttgataatttc 21190126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 4708150 - 4708195
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  4708150 cagagagctaacggaagtgagaggagaatggaaagggaaagttatg 4708195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 410 - 467
Target Start/End: Original strand, 20112293 - 20112353
Alignment:
Q  410 aacggagggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 467  Q
    ||||||||||||||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  20112293 aacggagggggtaattgactaacgtttgataatttcagtggggtttttgaagtttcttaaa 20112353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 14790784 - 14790730
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 467  Q
    ||||||||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  14790784 gggggtaattgactaacgtttgataatttcaggggggtttttgaagtttcttaaa 14790730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 445
Target Start/End: Complemental strand, 26544701 - 26544607
Alignment:
Q  354 gtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaaagcaa-cggagggggtaa--ttgactaacgtttgacaatttc 445  Q
    ||||| ||| || ||||||| ||| ||||||||||||||| ||||| || |||| ||| | |||||||| |  ||||||||||||||||||||||    
T  26544701 gtggaagtgccacgtgtacagttaattgccacgtcatatgatttaatagccaaaacaaacagagggggttaatttgactaacgtttgacaatttc 26544607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 445
Target Start/End: Complemental strand, 45105555 - 45105526
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttc 445  Q
    ||||||||||||||||||||||||||||||    
T  45105555 gggggtaattgactaacgtttgacaatttc 45105526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 314 - 461
Target Start/End: Complemental strand, 2163 - 2012
Alignment:
Q  314 tcatttaccccactatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaaagca-ac 412  Q
    ||||||||| | ||||||||||||||||  ||||| | ||||||||||| || |||| || |||  |||||||||| | ||| |||||| |||| || ||    
T  2163 tcatttacctccctatgacgtggcataactttcagtccacgtggaggtgccacgtgtgcagttaactgccacgtcacagggtgtaacagccaaaacagac 2064  T
Q  413 gga-gggggtaattgactaacgtttgacaatttc--gggggttttgaagttt 461  Q
    ||| ||||||||||||||||||||| ||||||||  |||| |||||||||||    
T  2063 ggaggggggtaattgactaacgtttaacaatttcagggggtttttgaagttt 2012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 314 - 467
Target Start/End: Original strand, 45114810 - 45114970
Alignment:
Q  314 tcatttaccccactatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaac-agacaaagca-- 410  Q
    ||||||||||| |||| ||||||| |||||| |||||||  ||||||||  ||||||||||||||||| ||||||||||||  |||| | | ||| ||      
T  45114810 tcatttacccccctataacgtggcgtaaaatccagccaatatggaggtgctatgtgtacatttacttgtcacgtcatatggcataacaacaaaaaacaaa 45114909  T
Q  411 -acggagggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 467  Q
     | |  |||||||||| |||||||||||||||||||    |||||||||||||||||||||    
T  45114910 caagaggggggtaattaactaacgtttgacaatttcatgaggggttttgaagtttcttaaa 45114970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 27560679 - 27560634
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  27560679 cagagagctaacgggagtgataggagaaaggaaagggaaagttatg 27560634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 37457120 - 37457075
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  37457120 cagagagctaacgggagtgataggagaaaggaaagggaaagttatg 37457075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 810344 - 810382
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaa 53  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  810344 cagagagctaacggaagtgagaggagaatggaaagggaa 810382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 4592739 - 4592685
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 467  Q
    ||||||||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  4592739 gggggtaattgactaacgtttgataatttcatgggggtttttgaagtttcttaaa 4592685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 410 - 467
Target Start/End: Complemental strand, 33002994 - 33002935
Alignment:
Q  410 aacggagggggtaattgactaacgtttgacaatttc--gggggttttgaagtttcttaaa 467  Q
    |||||||||||||||| |||||||||||||||||||   | | |||||||||||||||||    
T  33002994 aacggagggggtaattaactaacgtttgacaatttcatcgagtttttgaagtttcttaaa 33002935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 45114667 - 45114710
Alignment:
Q  193 ttgttgatagggtgttgtttcttaaaacaatttctgtatttttt 236  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  45114667 ttgttgataggttgttgtttcttaaaacaaattctgcatttttt 45114710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 27560612 - 27560543
Alignment:
Q  72 cccacgtgagtgtctagtaagttctacaatct--attattattaatacttctcatacttgattactttct 139  Q
    |||||||| |||||||||||||||||  || |  ||||| ||||||| ||||||||||| ||||||||||    
T  27560612 cccacgtgtgtgtctagtaagttctagtatatccattatcattaataattctcatacttaattactttct 27560543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 9e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 47052198 - 47052243
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  47052198 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 47052243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 467
Target Start/End: Complemental strand, 45576046 - 45575987
Alignment:
Q  410 aacggagggggtaattgactaacgtttgacaattt--cgggggttttgaagtttcttaaa 467  Q
    |||||||||||||||||||||||||||||||||||   ||| |||||||||||| |||||    
T  45576046 aacggagggggtaattgactaacgtttgacaattttatgggagttttgaagttttttaaa 45575987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 27585401 - 27585348
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttc--gggggttttgaagtttcttaaa 467  Q
    ||||||||| ||||||||||||||||||||  |||| |||||||||||||||||    
T  27585401 gggggtaatcgactaacgtttgacaatttcagggggtttttgaagtttcttaaa 27585348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 410 - 467
Target Start/End: Complemental strand, 36475391 - 36475331
Alignment:
Q  410 aacggagggggtaattgactaacgtttgacaatttcgggg---gttttgaagtttcttaaa 467  Q
    ||||||||||||||||||||||||||| |||||||| |||    |||||||||||||||||    
T  36475391 aacggagggggtaattgactaacgtttaacaatttcagggtttcttttgaagtttcttaaa 36475331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 19658157 - 19658201
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||    
T  19658157 cagagagctaacgggagtgagaggagaaaggaaa-ggaaagttatg 19658201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 467
Target Start/End: Original strand, 27586005 - 27586061
Alignment:
Q  413 ggagggggtaattgactaacgtttgacaatttcggggg--ttttgaagtttcttaaa 467  Q
    |||||||||||||||||||||||| |||||||| || |  |||||||||||||||||    
T  27586005 ggagggggtaattgactaacgtttaacaatttcaggagttttttgaagtttcttaaa 27586061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 416 - 467
Target Start/End: Original strand, 36475994 - 36476048
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 467  Q
    ||||||||||||||||||||| ||||||||   |||| |||||||||||||||||    
T  36475994 gggggtaattgactaacgtttaacaatttcatgggggtttttgaagtttcttaaa 36476048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 416 - 467
Target Start/End: Original strand, 47445798 - 47445852
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttcggggg---ttttgaagtttcttaaa 467  Q
    ||||||||||||||||||||||| |||||| ||||   |||||||||||||||||    
T  47445798 gggggtaattgactaacgtttgataatttcaggggtttttttgaagtttcttaaa 47445852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 462
Target Start/End: Complemental strand, 47445100 - 47445051
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttc 462  Q
    ||||||||||||||||||||||||||||||   |||| ||||||||||||    
T  47445100 gggggtaattgactaacgtttgacaatttcatgggggtttttgaagtttc 47445051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 352 - 445
Target Start/End: Original strand, 787906 - 788000
Alignment:
Q  352 acgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaaagcaac-ggagggggtaattgactaacgtttgacaatttc 445  Q
    |||||||||||||| ||||| | |||   |||| |||||| |||||||||| | || |||  ||||||||||||||||||||| |||| ||||||    
T  787906 acgtggaggtgtcacgtgtagaattaaccgccatgtcataaggtttaacagcccaaacaaatggagggggtaattgactaacggttgaaaatttc 788000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 471
Target Start/End: Original strand, 24646463 - 24646518
Alignment:
Q  419 ggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaatgtc 471  Q
    ||||||||| |||||||||||||||||    ||| |||||||||||||||||||||    
T  24646463 ggtaattgattaacgtttgacaatttcatgagggtttttgaagtttcttaaatgtc 24646518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 416 - 450
Target Start/End: Original strand, 33167 - 33201
Alignment:
Q  416 gggggtaattgactaacgtttgacaatttcggggg 450  Q
    |||||||||||||||||||||||||||||| ||||    
T  33167 gggggtaattgactaacgtttgacaatttcagggg 33201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University