View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8946_low_7 (Length: 548)
Name: NF8946_low_7
Description: NF8946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8946_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 40 - 445
Target Start/End: Complemental strand, 49827972 - 49827566
Alignment:
| Q |
40 |
gttacaaccgatccatttaacaatttgatagacctattgagcaat-atccttagtgccaaggtggagaattgttgggctgtggtgctaaacggttgtgca |
138 |
Q |
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| T |
49827972 |
gttacaaccgatccatttaacaatttgatagacctattgagcaaccatccttggtgccaaggtggagaattgttgggctgtggtgctaaacggttgtgca |
49827873 |
T |
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| Q |
139 |
ttttgttttcttttgttttgtgtcatcaatatgaggaacgttgtacttgtgctgggaaagttatttacatcttcctaaccgtttctgttgtatgtagttg |
238 |
Q |
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| T |
49827872 |
tttcgttttcttttgttttgtgtcatcaagcttaggaacgttgtacttgtgctgggaaagttatttacatcttcctaaccgtttctgttgtatgtagttg |
49827773 |
T |
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| Q |
239 |
aaaattggttgtaaatgaatctactatatgtagtttcatatcttgagagaaaattcaagagaaatttcagagaaaagtttagttgaccagtttcaaagat |
338 |
Q |
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| T |
49827772 |
aaaattggttgtaaatgaatctactatatgtagtttcatatcttgagagaaaattcaagagaaatttcagagaaaagtttagttgaccagtttcaaagat |
49827673 |
T |
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| Q |
339 |
caagtacttgtgaaaatcttgtactttttaataaagattatagtgaaaacttcataggtcggattcagtatcctagatataggagtatatctctgaactg |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49827672 |
caagtacttgtgaaaatcttgtactttttaataaagattatagtgaaaacttcataggtcggattcagtatcctagatataggagtatatctctgaactg |
49827573 |
T |
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| Q |
439 |
aatattg |
445 |
Q |
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| T |
49827572 |
aatattg |
49827566 |
T |
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