View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8946_low_9 (Length: 530)
Name: NF8946_low_9
Description: NF8946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8946_low_9 |
 | |
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| [»] chr6 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
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|
| [»] scaffold0354 (1 HSPs) |
| |
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| [»] scaffold0068 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 33347845 - 33347320
Alignment:
| Q |
1 |
caatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttacttatatccagcttaagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| |
|
|
| T |
33347845 |
caatttatccatctatcagaaaaacccatttttatcataacctttttcagataactccaatcaattatgtcatacgctttacttatgtcaagcttaagag |
33347746 |
T |
|
| Q |
101 |
caacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggacagatcgacctgcaacaaatgc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
33347745 |
caacatctcccaatgtacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggatagatcgacccggaacaaatgc |
33347646 |
T |
|
| Q |
201 |
agattgactatcagaaatgcacttatttaaaacaactttgagtcgatttgctaacactttcgctaccaccttataaatcacattgaataaggctataggt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33347645 |
agattgactatcagaaatgcacttatttaaaacaactttgagtcgatttgctaacactttcgctaccaccttataaatcacattgcataaggctataggt |
33347546 |
T |
|
| Q |
301 |
ctccagtctttcatagaagtttgagactcacccttcggaataagagctatggtggtcgcattgagagttggagggaaaccacctgtatctaaccattgac |
400 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
33347545 |
ctccagtctttcatataagtttgagacttacccttcggaataagagctatggtggtcgcattgagagttgtagggaaactacctgtatctaaccattgac |
33347446 |
T |
|
| Q |
401 |
aacactggtggaataattcttcgccacaagatgcccaaaatttttggaaaaaacccggattgaatccgtctggccccggacacttatccgccttcatgga |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33347445 |
aacactggtggaataattcttcgccacaagatggccaaaatttttggaaaaaacccggattgaatccgtctggccccggacacttatctgccttcatgga |
33347346 |
T |
|
| Q |
501 |
aaaaatagcttctttaaattcagaaa |
526 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
33347345 |
aaaaagagcttctttaaattcagaaa |
33347320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 19111959 - 19112489
Alignment:
| Q |
1 |
caatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttacttatatccagcttaagag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| |||||||||| |
|
|
| T |
19111959 |
caatttatccatctatcagaaaaacccatttttatcataacccttttcaaataactccaatcaattatgtcatacgttttacttatatcaagcttaagag |
19112058 |
T |
|
| Q |
101 |
caacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggacagatcgacctgcaacaaatgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
19112059 |
caacatctcccaatatacctttgactttcgactccatataatgaatgatctctatggcttccatagcattatctaggatagatcgacccggaacaaatgc |
19112158 |
T |
|
| Q |
201 |
agattgactatcagaaatgcacttatttaaaacaactttgagtcgatttgctaacactttcgctaccaccttataaatcacattgaataaggctataggt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19112159 |
agattgactatcagaaatgcacttatttaaaacaactttgagtcgatttgctaacactttcgctaccaccttataaatcacattgtataaggctataggt |
19112258 |
T |
|
| Q |
301 |
ctccagtctttcatagaagtttgagactcacccttcggaataagagctatggtggtcgcattgagagttggagggaaaccacctgtatctaaccattgac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
19112259 |
ctccagtctttcatagaagtttgagactcacctttcggaataagagctatggtggtcgcattgagagttggagggaagctacctgtatctaaccattgac |
19112358 |
T |
|
| Q |
401 |
aacactggtggaataattcttcgccacaagatgcccaaaatttttgg-aaaaaacccggattgaatccgtctggccccggacacttatccgccttcatgg |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
19112359 |
aacactggtggaataattcttcgccacaagatgcccaaaatttttggaaaaaaacccggattgaatccgtctagccccggacacttatctaccttcatgg |
19112458 |
T |
|
| Q |
500 |
aaaaaatagcttctttaaattcagaaatcac |
530 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
19112459 |
aaaaaagagcttctttaaattcagaaatcac |
19112489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 26383537 - 26384066
Alignment:
| Q |
1 |
caatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttacttatatccagcttaagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
26383537 |
caatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattctgtcatacgctttacttatatcaagcttaagag |
26383636 |
T |
|
| Q |
101 |
caacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggacagatcgacctgcaacaaatgc |
200 |
Q |
| |
|
||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
26383637 |
aaacatctcccaatgtaactttgagtttcgacttcatataatgaatgatctctatggctgccatagcattatctaggatagatcgacccggaacaaatgc |
26383736 |
T |
|
| Q |
201 |
agattgactatcagaaatgcacttatttaaaacaactttgagtcgatttgctaacactttcgctaccaccttataaatcacattgaataaggctataggt |
300 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26383737 |
aaattgactattagaaatgcacttatttaaaacaactttgagttgatttgctaacactttcgctaccaccttataaatcacattgcataaggctataggt |
26383836 |
T |
|
| Q |
301 |
ctccagtctttcatagaagtttgagactcacccttcggaataagagctatggtggtcgcattgagagttggagggaaaccacctgtatctaaccattgac |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
26383837 |
ctccagtctctcatagaagtttgagactcacccttcggaataagagctatggtggtcgcattgagagttagagggaaactacctgtatctaaccattgac |
26383936 |
T |
|
| Q |
401 |
aacactggtggaataattcttcgccacaagatgcccaaaatttttggaaaaaacccggattgaatccgtctggccccggacacttatccgccttcatgga |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| |
|
|
| T |
26383937 |
aacactggtggaataattcttcgccacaagatgcccaaaatttttggaaaaaacccggattgaatccgtctagccctagacacttatctgccttcatgga |
26384036 |
T |
|
| Q |
501 |
aaaaatagcttctttaaattcagaaatcac |
530 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |
|
|
| T |
26384037 |
aaaaagagcttctttaaattcaaaaatcac |
26384066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0354 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold0354
Description:
Target: scaffold0354; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 157 - 530
Target Start/End: Original strand, 30 - 403
Alignment:
| Q |
157 |
gctgccatagcattatctaggacagatcgacctgcaacaaatgcagattgactatcagaaatgcacttatttaaaacaactttgagtcgatttgctaaca |
256 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30 |
gctgccatagcattatctaggatagatcgacccggaacaaatgcaggttgacagtcagaaatgcacttatttaaaacaaatttgagtcgatttgctaaca |
129 |
T |
|
| Q |
257 |
ctttcgctaccaccttataaatcacattgaataaggctataggtctccagtctttcatagaagtttgagactcacccttcggaataagagctatggtggt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
130 |
ctttcgctaccaccttataaatcacattgcataaggctataggtctccagtctttcatagaagtttgagactcacccttcggaataagagctatggtggt |
229 |
T |
|
| Q |
357 |
cgcattgagagttggagggaaaccacctgtatctaaccattgacaacactggtggaataattcttcgccacaagatgcccaaaatttttggaaaaaaccc |
456 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
230 |
cgcattgagaggtggagggaaactacctgtatctaaccattgacaacattggtggaataattcttcgccacaagatgcccaaaatttttggaaaaaaccc |
329 |
T |
|
| Q |
457 |
ggattgaatccgtctggccccggacacttatccgccttcatggaaaaaatagcttctttaaattcagaaatcac |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
330 |
ggattgaatccgtctggccccggacacttatctgccttcatggaaaaaagagcttctttaaattcagaaatcac |
403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 48211307 - 48211202
Alignment:
| Q |
68 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
167 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| |||||||| |||||||||||| ||||| |||||| | |
|
|
| T |
48211307 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatatgatgaatgatctcaatggcagccataac |
48211208 |
T |
|
| Q |
168 |
attatc |
173 |
Q |
| |
|
|||||| |
|
|
| T |
48211207 |
attatc |
48211202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 172
Target Start/End: Original strand, 46390140 - 46390244
Alignment:
| Q |
68 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
167 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| |||||||| |||||||||||| ||||| ||||| | |
|
|
| T |
46390140 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatatgatgaatgatctcaatggcaaccataac |
46390239 |
T |
|
| Q |
168 |
attat |
172 |
Q |
| |
|
||||| |
|
|
| T |
46390240 |
attat |
46390244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 11762 - 11867
Alignment:
| Q |
68 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
167 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| ||||||| || ||||||||| ||||| ||||||| |
|
|
| T |
11762 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatacgattaatgatctcaatggcaaccatagc |
11861 |
T |
|
| Q |
168 |
attatc |
173 |
Q |
| |
|
|||||| |
|
|
| T |
11862 |
attatc |
11867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 21702148 - 21702043
Alignment:
| Q |
68 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
167 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| ||||||| || ||||||||| ||||| ||||||| |
|
|
| T |
21702148 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatacgattaatgatctcaatggcaaccatagc |
21702049 |
T |
|
| Q |
168 |
attatc |
173 |
Q |
| |
|
|||||| |
|
|
| T |
21702048 |
attatc |
21702043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 5613176 - 5613214
Alignment:
| Q |
57 |
ccaatcaattttgtcatacgctttacttatatccagctt |
95 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
5613176 |
ccaatcaattctatcatacgctttacttatatccagctt |
5613214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 173
Target Start/End: Original strand, 23266603 - 23266720
Alignment:
| Q |
56 |
tccaatcaattttgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctat |
155 |
Q |
| |
|
|||| |||||||||||||| ||||| || ||||| || || ||||| || ||||| | || | ||||||||||||||||||| ||| || || ||||| |
|
|
| T |
23266603 |
tccactcaattttgtcatatgctttgctaatatcaagtttcagagccacttctccaacgttatccttgactttcgacttcatatgatgtattatttctat |
23266702 |
T |
|
| Q |
156 |
ggctgccatagcattatc |
173 |
Q |
| |
|
|| |||||| ||||||| |
|
|
| T |
23266703 |
agcagccataacattatc |
23266720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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