View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8947_high_3 (Length: 289)
Name: NF8947_high_3
Description: NF8947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8947_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 43132642 - 43132925
Alignment:
| Q |
1 |
ctcgcgctccgatgtgttatagttgtgactttctaaagctataaatcctagcttttgatttcactgtgaaaacaaaggagtactaaatccattaatttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
43132642 |
ctcgcgctccgatgtgttatagttgtgactttctaaagctataaatcctagcttttgatttcactgtgaaaacaaaggagtactaaatccattactctgt |
43132741 |
T |
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| Q |
101 |
gtagatagtgtaccatggttgcacaaatagtcaaatacttgtagatattcctgcnnnnnnnntctataatactaactaaaaacatttaaaataaattccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43132742 |
gtagatagtgtaccatggttgcacaaatagtcaaatacttgtagatattcctgcaaaaaaattctataatactaactaaaaacatttaaaataaattccc |
43132841 |
T |
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| Q |
201 |
ctgctttggctaggattgagaattt----tctatgtccttcacaatttcactaatagcagttttaaccatatttacagaattat |
280 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43132842 |
ctgctttggctaggattgagaattttctatctatgtccttcacaatttcactaatagcagttttaaccatatttacaggattat |
43132925 |
T |
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