View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8947_low_12 (Length: 237)
Name: NF8947_low_12
Description: NF8947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8947_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 27815298 - 27815495
Alignment:
| Q |
16 |
cgtgttgaaatattatcatggtgatggtttaatggagagagctgaaaatatggtcttaaattttgaaattaaagcagtaatcaaatgattagtttctaaa |
115 |
Q |
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| T |
27815298 |
cgtgttgaaatattatcatggtgatggtttaatggagagagctgaaaatatggtcttaaattttgaaattaaagcagtaatcaaatgattagtttctaaa |
27815397 |
T |
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| Q |
116 |
caatttaaataatgagagaattatatgacagagttggactgcgtcatactctattgtaaaacaaacagggcatcttccatgttacaaatgacaagatt |
213 |
Q |
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| T |
27815398 |
caatttaaataatgagagaattatatgacagagttggactgcgtcatactctattgtaaaacaaacagggcatcttccatgttacaaatgacaagatt |
27815495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 27807514 - 27807648
Alignment:
| Q |
20 |
ttgaaatattatcatggtgatggtttaatggagagagctgaaaatatggtcttaaattttgaaattaaagcagtaatcaaatgattagtttctaaacaat |
119 |
Q |
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| T |
27807514 |
ttgaaatattatcttggtgatggattaatggagatagtggaaattttggtcttaaattttgaaattagagtggtaatcagataattagtttctaaacaat |
27807613 |
T |
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| Q |
120 |
ttaaataatgagagaattatatgacagagttggac |
154 |
Q |
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| T |
27807614 |
ttaaataatcagagaattatatgagggagttggac |
27807648 |
T |
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