View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8947_low_3 (Length: 558)
Name: NF8947_low_3
Description: NF8947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8947_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 33965972 - 33966516
Alignment:
| Q |
1 |
agttcggtcaattgtgtctttgtctctgactaaatcgaggctacattgattttctattattcaagcttaagaatacgtattataaatgtttaaatactat |
100 |
Q |
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||||||||||||||||||||| ||||| |||| || |||||||||||||||||| |||||||||||||| |||||| |||||||| ||||| |||||||| |
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| T |
33965972 |
agttcggtcaattgtgtctttatctcttactacattgaggctacattgattttcgattattcaagcttaggaatacatattataagtgttttaatactat |
33966071 |
T |
|
| Q |
101 |
cgttcagtttacaagattatccctgaatcataccattgaggactccacgccaataagggtacnnnnnnnnnnta--actaaatctttagtcaaagactaa |
198 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| | |||||||||||||||||||||||| |
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| T |
33966072 |
agtttagtttacaagattatccctgaatcgtaccattgaggactccgcaccaataagggtacaaaaaaaaaaaacaactaaatctttagtcaaagactaa |
33966171 |
T |
|
| Q |
199 |
taatctgagaattctgatgatagaaactcacaaggaaaaaacacaagaagaaacaaa-gttgtctgtgtaatctctttccaacaacattttatgtgtaaa |
297 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33966172 |
taatctgagaattctaatgatagaaactcataaggaaaaaacacaagaagaaacaaaagttgtctgtgtaatctctttccaacaacattgtatgtgtaaa |
33966271 |
T |
|
| Q |
298 |
ctaaaaaacataacataataccaaatgcagacaaacaccaaaattcatctctgacaaaaacaaacatcaaattattcaaaaatgttggctactcaatttg |
397 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33966272 |
ctaaaaaacataacacaataccaaatgcagacaaacaccaaaattcatctctgacaaaaacaaacatcaagttattcaaaaatgttggctactcaatttg |
33966371 |
T |
|
| Q |
398 |
gtccgacatcaaggtttttcatgtctattcgcaatttcaatttaatctaaagctcatccgaaatgtaaataaagtttgactaaggattgcttcagttaaa |
497 |
Q |
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||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33966372 |
gtccgacatcaaggttttttatttctattctcaatttcaatttaatctaaagctcatccgaaatgtaaataaagtttgactaaggattatttcagttaaa |
33966471 |
T |
|
| Q |
498 |
attcgaattcagattcttcc-aataatatgtcttccatcgaagct |
541 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
33966472 |
attcgaattcagattcttccaaataatatgtcttccatccaagct |
33966516 |
T |
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