View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8947_low_4 (Length: 456)

Name: NF8947_low_4
Description: NF8947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8947_low_4
NF8947_low_4
[»] chr7 (4 HSPs)
chr7 (17-248)||(45843925-45844157)
chr7 (318-447)||(45843724-45843853)
chr7 (355-431)||(23416371-23416447)
chr7 (353-412)||(19626100-19626159)
[»] chr4 (8 HSPs)
chr4 (353-409)||(50859398-50859454)
chr4 (348-412)||(46142597-46142661)
chr4 (365-412)||(21261147-21261194)
chr4 (360-412)||(29012152-29012205)
chr4 (351-412)||(41223028-41223089)
chr4 (360-412)||(13779936-13779988)
chr4 (364-412)||(31229008-31229056)
chr4 (360-412)||(35033258-35033310)
[»] chr8 (7 HSPs)
chr8 (360-447)||(37804812-37804899)
chr8 (71-219)||(37804556-37804701)
chr8 (351-412)||(34924105-34924166)
chr8 (353-411)||(20307721-20307779)
chr8 (353-411)||(21094354-21094412)
chr8 (353-411)||(44605891-44605949)
chr8 (351-412)||(14111698-14111759)
[»] chr6 (2 HSPs)
chr6 (348-412)||(13106511-13106575)
chr6 (350-418)||(10871925-10871993)
[»] chr5 (5 HSPs)
chr5 (353-412)||(4944427-4944486)
chr5 (329-412)||(7506288-7506371)
chr5 (353-412)||(30085585-30085644)
chr5 (158-243)||(21521277-21521363)
chr5 (158-243)||(21531843-21531929)
[»] chr3 (8 HSPs)
chr3 (353-412)||(42028698-42028757)
chr3 (360-412)||(8926364-8926417)
chr3 (360-412)||(20028970-20029022)
chr3 (353-412)||(25046057-25046116)
chr3 (353-412)||(32279043-32279102)
chr3 (346-412)||(35231292-35231358)
chr3 (353-431)||(44714007-44714085)
chr3 (163-243)||(20029109-20029190)
[»] chr2 (3 HSPs)
chr2 (353-412)||(28198599-28198658)
chr2 (353-412)||(28219681-28219740)
chr2 (352-412)||(18052016-18052076)
[»] scaffold0204 (1 HSPs)
scaffold0204 (354-412)||(11768-11826)
[»] chr1 (2 HSPs)
chr1 (346-412)||(35306276-35306342)
chr1 (348-405)||(51195084-51195141)
[»] scaffold0039 (1 HSPs)
scaffold0039 (351-412)||(57620-57681)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 45844157 - 45843925
Alignment:
Q  17 agtctactcatgacactatatctgtgggttggaagtggttcaaatttatttacgtttataattaagcaagttaaattatttttcgattgatgaactataa 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45844157 agtctactcatgacactatatatgtgggttggaagtggttcaaatttatttacgtttataattaagcaagttaaattctttttcgattgatgaactataa 45844058  T
Q  117 tttataaaatatt-atgctttttatttgatgtcatattaatgtattcaaaataatagtaaaataaagaataaacaggtataatccactgtattcactcaa 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45844057 tttataaaatatttatgctttttatttgatgtcatattaatgtattcaaaataatagtaaaataaagaataaacaggtataatccactgtattcactcaa 45843958  T
Q  216 tttccatgctaatcattgaaaggagaagctctc 248  Q
    |||||||||||||||||||||||||||||||||    
T  45843957 tttccatgctaatcattgaaaggagaagctctc 45843925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 318 - 447
Target Start/End: Complemental strand, 45843853 - 45843724
Alignment:
Q  318 tgatttaaatctacatagtagtattattttttaataagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaacagaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45843853 tgatttaaatctacatagtagtattattttttaataagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaacggaa 45843754  T
Q  418 taaaaaatttgttctcctccgtagtataat 447  Q
    |||||| ||||||||||||||| |||||||    
T  45843753 taaaaattttgttctcctccgtggtataat 45843724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 431
Target Start/End: Complemental strand, 23416447 - 23416371
Alignment:
Q  355 gggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaacagaataaaaaatttgttc 431  Q
    |||| |||||||||||||||  ||||||| ||||| |||||||||| |||||||||||  ||||||  |||||||||    
T  23416447 gggtaaaaatggaataaaaaatttataacacattccattccgttcattttccaaacaatggaataagtaatttgttc 23416371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 19626100 - 19626159
Alignment:
Q  353 aagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||| |||||||||||||||  |||||| ||||||  |||| ||||||||||||||||    
T  19626100 aagggtaaaaatggaataaaaaaattataaatcattccgttccattcactttccaaacaa 19626159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 50859398 - 50859454
Alignment:
Q  353 aagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaa 409  Q
    |||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||||    
T  50859398 aagggtaaaaatggaataaaaaagttataactcattccattccgtccactttccaaa 50859454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 46142597 - 46142661
Alignment:
Q  348 ttaataagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||| |||| ||||||||||||||| ||||||| |||||| ||| ||||| ||||||||||||    
T  46142597 ttaataggggtaaaaatggaataaaaaagttataattcattccatttcgttctctttccaaacaa 46142661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 412
Target Start/End: Complemental strand, 21261194 - 21261147
Alignment:
Q  365 ggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  21261194 ggaataaaaaagttataactaattccattccgttcactttccaaacaa 21261147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 29012152 - 29012205
Alignment:
Q  360 aaaatggaataaaaac-gttataactcattctattccgttcactttccaaacaa 412  Q
    |||||||||||||||  |||||||| |||||||||||||||| |||||||||||    
T  29012152 aaaatggaataaaaaaagttataacacattctattccgttcattttccaaacaa 29012205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 41223089 - 41223028
Alignment:
Q  351 ataagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||||| ||| ||||||||||| |||||||||| |||  ||||||| |||||||||||||    
T  41223089 ataagggtaaaattggaataaaaaagttataactcgttccgttccgttaactttccaaacaa 41223028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 13779936 - 13779988
Alignment:
Q  360 aaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||||||||||||  |||||| ||||||  |||| ||||||||||||||||    
T  13779936 aaaatggaataaaaaaattataaatcattccgttccattcactttccaaacaa 13779988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 31229008 - 31229056
Alignment:
Q  364 tggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    ||||||||||| ||||||||||||||  ||||||  |||||||||||||    
T  31229008 tggaataaaaatgttataactcattccgttccgtcaactttccaaacaa 31229056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 35033310 - 35033258
Alignment:
Q  360 aaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||||||||||||  |||||| ||||||  |||| ||||||||||||||||    
T  35033310 aaaatggaataaaaaaattataaatcattccgttccattcactttccaaacaa 35033258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 447
Target Start/End: Original strand, 37804812 - 37804899
Alignment:
Q  360 aaaatggaataaaaacgttataactcattctattccgttcactttccaaacaacagaataaaaaatttgttctcctccgtagtataat 447  Q
    ||||||||||||||| |||||||| |||||||||||||||| ||| |||||||  ||| ||  |||||||||  |||||| |||||||    
T  37804812 aaaatggaataaaaaagttataacacattctattccgttcatttttcaaacaatggaacaagtaatttgttccgctccgttgtataat 37804899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 219
Target Start/End: Original strand, 37804556 - 37804701
Alignment:
Q  71 tttataattaagcaagttaaattatttttcgattgatgaactataatttataaaatattatgctttttatttgatgtcatattaatgtattcaaaataat 170  Q
    |||||||||||||||||||| ||||||||  |||||| ||| |||| ||||| |||||||     | | ||||||||| |||| || |||| || ||||     
T  37804556 tttataattaagcaagttaacttatttttttattgataaacaataacttatataatatta----atgtttttgatgtcgtatttatctatttaatataag 37804651  T
Q  171 agtaaaataaagaataaac-aggtataatccactgtattcactcaatttc 219  Q
     |||||||||| ||||||| || |||||| |||| ||||| |||||||||    
T  37804652 ggtaaaataaaaaataaacaagttataattcactttattctctcaatttc 37804701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 34924166 - 34924105
Alignment:
Q  351 ataagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||||| ||| ||||||||||| |||||||||| |||  ||||||| |||||||||||||    
T  34924166 ataagggtaaaattggaataaaaaagttataactcgttccgttccgttaactttccaaacaa 34924105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 20307721 - 20307779
Alignment:
Q  353 aagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaaca 411  Q
    |||||| ||||||||||||||| ||||||| | |||| |||||||  ||||||||||||    
T  20307721 aagggtaaaaatggaataaaaatgttataatttattccattccgtcaactttccaaaca 20307779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 21094354 - 21094412
Alignment:
Q  353 aagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaaca 411  Q
    |||||| ||||||||||||||| ||||||| | |||| |||||||  ||||||||||||    
T  21094354 aagggtaaaaatggaataaaaatgttataatttattccattccgtcaactttccaaaca 21094412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 44605891 - 44605949
Alignment:
Q  353 aagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaaca 411  Q
    |||||| ||||||||||||||| ||||||| | |||| |||||||  ||||||||||||    
T  44605891 aagggtaaaaatggaataaaaatgttataatttattccattccgtcaactttccaaaca 44605949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 14111759 - 14111698
Alignment:
Q  351 ataagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||||| ||| ||||||||||| |||||||||| |||  ||||| | |||||||||||||    
T  14111759 ataagggtaaaattggaataaaaaagttataactcgttccgttccgctaactttccaaacaa 14111698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 13106511 - 13106575
Alignment:
Q  348 ttaataagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||| |||| |||||| |||||||| ||||||| |||||||||| ||||| ||||||||||||    
T  13106511 ttaataggggtaaaaatgaaataaaaaagttataattcattctatttcgttctctttccaaacaa 13106575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 418
Target Start/End: Original strand, 10871925 - 10871993
Alignment:
Q  350 aataagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaacagaat 418  Q
    ||||||||| ||||||||||||| | |||||||  | ||| ||||| | |||||||||||||| |||||    
T  10871925 aataagggtaaaaatggaataaataagttataatgctttccattccatccactttccaaacaatagaat 10871993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 4944427 - 4944486
Alignment:
Q  353 aagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||| ||||||||||||||| |||||| || |||| ||||||| ||||||||||||||    
T  4944427 aagggtaaaaatggaataaaaaagttatatctaattccattccgtccactttccaaacaa 4944486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 412
Target Start/End: Complemental strand, 7506371 - 7506288
Alignment:
Q  329 tacatagtagtattattttttaataagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||| || || ||||||| ||||||||| |||||||||| || |  ||||||||  ||| ||||||| ||||||||||||||    
T  7506371 tacataataatagtatttttaaataagggtaaaaatggaattaagaaattataacttgttccattccgtccactttccaaacaa 7506288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 30085585 - 30085644
Alignment:
Q  353 aagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||| |||||| |||||||| ||||||| ||||||  |||| ||||||||||||||||    
T  30085585 aagggtaaaaatgaaataaaaaagttataaatcattccgttccattcactttccaaacaa 30085644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 21521277 - 21521363
Alignment:
Q  158 tattcaaaataatagtaaaataaagaataaac-aggtataatccactgtattcactcaatttccatgctaatcattgaaaggagaag 243  Q
    |||| |||||||  |||||||||||||||||| ||||||||| || | |||||  |||||||| ||| |||| | ||||||||||||    
T  21521277 tatttaaaataagggtaaaataaagaataaacaaggtataattcattatattctatcaatttcaatgttaataactgaaaggagaag 21521363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 21531843 - 21531929
Alignment:
Q  158 tattcaaaataatagtaaaataaagaataaac-aggtataatccactgtattcactcaatttccatgctaatcattgaaaggagaag 243  Q
    |||| |||||||  |||||||||||||||||| ||||||||| || | |||||  |||||||| ||| |||| | ||||||||||||    
T  21531843 tatttaaaataagggtaaaataaagaataaacaaggtataattcattatattctatcaatttcaatgttaataactgaaaggagaag 21531929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 42028757 - 42028698
Alignment:
Q  353 aagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||| ||||||||||||||| ||||||||| |||  ||||||| ||||||||||||||    
T  42028757 aagggtaaaaatggaataaaaaagttataactaatttcattccgtccactttccaaacaa 42028698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 8926364 - 8926417
Alignment:
Q  360 aaaatggaataa-aaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||||||||| |||  ||||||||||||||||||||| ||||||||||||||    
T  8926364 aaaatggaataacaaaaattataactcattctattccgtccactttccaaacaa 8926417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 20029022 - 20028970
Alignment:
Q  360 aaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    ||||||||||||||| |||||||||||||| |||  ||||| |||||||||||    
T  20029022 aaaatggaataaaaaagttataactcattccattttgttcattttccaaacaa 20028970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 25046057 - 25046116
Alignment:
Q  353 aagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||| ||||||||||||||| ||||||| ||||||  |||| ||||||||| ||||||    
T  25046057 aagggtaaaaatggaataaaaaagttataaatcattccgttccattcactttctaaacaa 25046116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 32279043 - 32279102
Alignment:
Q  353 aagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||| |||||||||| |||| ||||||| ||||||  |||| ||||||||||||||||    
T  32279043 aagggtaaaaatggaatgaaaaagttataaatcattccgttccattcactttccaaacaa 32279102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 35231358 - 35231292
Alignment:
Q  346 ttttaataagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||| |||||||| ||| |||||||||||  ||||||||||||| |||||||  | |||||||||||    
T  35231358 tttttataagggtaaaattggaataaaaaaattataactcattccattccgtcaattttccaaacaa 35231292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 431
Target Start/End: Original strand, 44714007 - 44714085
Alignment:
Q  353 aagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaacagaataaaaaatttgttc 431  Q
    |||||| ||| |||||||||||  |||||| ||||||  ||||||||| || |||||||| ||||| ||||||| ||||    
T  44714007 aagggtaaaattggaataaaaaaattataattcattccgttccgttcatttgccaaacaatagaatgaaaaattagttc 44714085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 20029190 - 20029109
Alignment:
Q  163 aaaataatagtaaaataaagaataaac-aggtataatccactgtattcactcaatttccatgctaatcattgaaaggagaag 243  Q
    |||||||  |||||||||||||||||| || |||||| |||| ||||| ||||||||  ||| |||| | ||||||||||||    
T  20029190 aaaataagggtaaaataaagaataaacaagttataattcactatattctctcaattttaatgttaataactgaaaggagaag 20029109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 28198658 - 28198599
Alignment:
Q  353 aagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||| ||||||||||||||| ||||||| ||||||  |||| ||||||||||||||||    
T  28198658 aagggtaaaaatggaataaaaaagttataaatcattccgttccattcactttccaaacaa 28198599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 28219681 - 28219740
Alignment:
Q  353 aagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||| |||||| |||||||| ||||||||| |||  ||||||| ||||||||||||||    
T  28219681 aagggtaaaaatgaaataaaaaagttataactaatttcattccgtccactttccaaacaa 28219740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 412
Target Start/End: Complemental strand, 18052076 - 18052016
Alignment:
Q  352 taagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    ||||||| |||||||||||||||  |||||||   |||| |||||||||||||| ||||||    
T  18052076 taagggtaaaaatggaataaaaaaattataacatgttctgttccgttcactttcgaaacaa 18052016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 412
Target Start/End: Complemental strand, 11826 - 11768
Alignment:
Q  354 agggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    ||||| ||||||||||||||| ||||||| | || || |||||||||||||||||||||    
T  11826 agggtaaaaatggaataaaaaggttataatttatgctgttccgttcactttccaaacaa 11768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 35306342 - 35306276
Alignment:
Q  346 ttttaataagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||| |||||||| ||| |||||||||||  ||||||||||||| |||||||  | |||||||||||    
T  35306342 tttttataagggtaaaattggaataaaaaaattataactcattccattccgtcaattttccaaacaa 35306276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 51195084 - 51195141
Alignment:
Q  348 ttaataagggtgaaaatggaataaaaacgttataactcattctattccgttcactttc 405  Q
    |||||| |||| ||||||||||||||| ||||||| |  |||| ||||||||||||||    
T  51195084 ttaataggggtaaaaatggaataaaaaagttataatttgttctgttccgttcactttc 51195141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 57620 - 57681
Alignment:
Q  351 ataagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaa 412  Q
    |||||||| ||| || |||||||| |||||||||| |||  ||||||| |||||||||||||    
T  57620 ataagggtaaaattgaaataaaaaagttataactcgttccgttccgttaactttccaaacaa 57681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University