View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8947_low_5 (Length: 343)

Name: NF8947_low_5
Description: NF8947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8947_low_5
NF8947_low_5
[»] chr2 (25 HSPs)
chr2 (18-161)||(10463643-10463786)
chr2 (222-330)||(10463847-10463955)
chr2 (20-132)||(10518583-10518702)
chr2 (21-122)||(10545209-10545310)
chr2 (250-330)||(10518819-10518899)
chr2 (247-330)||(10545587-10545670)
chr2 (251-335)||(28102274-28102358)
chr2 (251-330)||(10493377-10493456)
chr2 (243-330)||(10849921-10850008)
chr2 (232-330)||(10507917-10508015)
chr2 (251-335)||(27968461-27968545)
chr2 (251-335)||(28092042-28092126)
chr2 (251-313)||(7481727-7481789)
chr2 (20-85)||(10507409-10507474)
chr2 (251-330)||(7478124-7478203)
chr2 (251-330)||(10489304-10489383)
chr2 (20-84)||(7478672-7478734)
chr2 (32-136)||(10474236-10474347)
chr2 (18-85)||(7476506-7476571)
chr2 (252-330)||(10475073-10475151)
chr2 (18-75)||(10488760-10488815)
chr2 (20-74)||(10507523-10507577)
chr2 (238-328)||(10863406-10863496)
chr2 (20-70)||(9079984-9080036)
chr2 (20-68)||(10848851-10848897)
[»] chr5 (2 HSPs)
chr5 (20-122)||(33602615-33602724)
chr5 (20-75)||(33575332-33575386)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 10463643 - 10463786
Alignment:
Q  18 attgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttggaaatgggggagaagtaacagctggttttcgtatatcatgct 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10463643 attgcttcctacaaacacaataataacaaaaagaaaattatttacaaaataagatttggaaatgggggagaagtaacagctggttttcgtatatcatgct 10463742  T
Q  118 atatctgaaaatgcatctgctgctatgttgataaaccattagtc 161  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  10463743 atatctgaaaatgcatctgctgctatgttgataaactattagtc 10463786  T

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Target: chr2; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 222 - 330
Target Start/End: Original strand, 10463847 - 10463955
Alignment:
Q  222 tgcgatgaataaacaagacactgttacccacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10463847 tgcgatgaataaacaagacactgttacccacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgt 10463946  T
Q  322 ctgacacag 330  Q
    |||||||||    
T  10463947 ctgacacag 10463955  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 10518583 - 10518702
Alignment:
Q  20 tgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttggaaa-------tgggggagaagtaacagctggttttcgtatatc 112  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| |||       |||||| ||||||||| ||||||||| ||||||    
T  10518583 tgcttcctacacacacaataataacaaaaagaaaataatttacaaaataagatttgaaaatggggggtgggggcgaagtaacaactggttttcatatatc 10518682  T
Q  113 atgctatatctgaaaatgca 132  Q
    |  |||||| ||||||||||    
T  10518683 acactatatttgaaaatgca 10518702  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 10545209 - 10545310
Alignment:
Q  21 gcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttggaaatgggggagaagtaacagctggttttcgtatatcatgctata 120  Q
    |||||||||||||||||||| |||||||| |||| ||||||||| ||||||  |||   |||||| ||||||||| |||||||||||||||||  |||||    
T  10545209 gcttcctacaaacacaataataacaaaaataaaactatttacaagataagagatgggggtgggggtgaagtaacaactggttttcgtatatcacactata 10545308  T
Q  121 tc 122  Q
    ||    
T  10545309 tc 10545310  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 250 - 330
Target Start/End: Original strand, 10518819 - 10518899
Alignment:
Q  250 cacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 330  Q
    ||||||||| ||||||||| |||||||||||||||||| |||||||||| |||||||||||| | ||||| || |||||||    
T  10518819 cacacaccttaagatcagcagctgatatgggcttgccaatgcaaaaagcttcagcaagtttaccgtccacctcggacacag 10518899  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 10545587 - 10545670
Alignment:
Q  247 acccacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 330  Q
    |||||||||||| ||||||||||||||| ||||||||| | ||||||||||| |||||||||||||| || || ||||| ||||    
T  10545587 acccacacacctcaagatcagctgctgaaatgggcttgtcgctgcaaaaagcttcagcaagtttatcgtctacctctgatacag 10545670  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 28102358 - 28102274
Alignment:
Q  251 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacaggttct 335  Q
    |||||||| |||||||| |||||||||||||||  ||||||||||||| ||||||||||| || ||||| | |||||||| ||||    
T  28102358 acacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28102274  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 251 - 330
Target Start/End: Original strand, 10493377 - 10493456
Alignment:
Q  251 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 330  Q
    |||||||| ||||||||||||||| ||||| ||| |||||| |||||| |||||||||||||| ||||| || |||||||    
T  10493377 acacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttatcgtccacctcggacacag 10493456  T

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Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 330
Target Start/End: Original strand, 10849921 - 10850008
Alignment:
Q  243 tgttacccacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 330  Q
    |||| ||| ||||||| |||||||| |||||||||||||||| ||| || |||||| |||||||||||||| ||||| || |||||||    
T  10849921 tgttgcccccacacctcaagatcaggtgctgatatgggcttgtcacagcgaaaagcttcagcaagtttatcgtccacctcagacacag 10850008  T

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Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 10507917 - 10508015
Alignment:
Q  232 aaacaagacactgttacccacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 330  Q
    |||||||||  |||||| ||||||||| ||||||||||||||||||||||||| |||  |  ||||| |||||||||||||| || || || |||||||    
T  10507917 aaacaagaccttgttactcacacacctcaagatcagctgctgatatgggcttgtcaccaccgaaagcttcagcaagtttatcgtcaacctcggacacag 10508015  T

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Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 335
Target Start/End: Original strand, 27968461 - 27968545
Alignment:
Q  251 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacaggttct 335  Q
    |||||||| |||||||| |||||||||||||||  | ||||||||||| ||||||||||| || ||||| | |||||||| ||||    
T  27968461 acacacctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 27968545  T

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Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 28092126 - 28092042
Alignment:
Q  251 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacaggttct 335  Q
    |||||||| |||||||| |||||||||||||||  | ||||||||||| ||||||||||| || ||||| | |||||||| ||||    
T  28092126 acacacctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28092042  T

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Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 7481789 - 7481727
Alignment:
Q  251 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatc 313  Q
    |||||||| ||||||||| ||||| ||||||||| |||||| |||||| ||||||||||||||    
T  7481789 acacacctcaagatcagcggctgagatgggcttgtcactgctaaaagcttcagcaagtttatc 7481727  T

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Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 10507409 - 10507474
Alignment:
Q  20 tgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttggaaatggggg 85  Q
    ||||||||||| ||||||||| ||||| |||||||| | ||||||| ||||||||| |||||||||    
T  10507409 tgcttcctacacacacaataataacaacaagaaaataacttacaaattaagatttgaaaatggggg 10507474  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 330
Target Start/End: Complemental strand, 7478203 - 7478124
Alignment:
Q  251 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 330  Q
    |||||||| |||||||||| ||||  ||| |||| ||||||||||||| |||||||||||||  ||||| || |||||||    
T  7478203 acacacctcaagatcagctactgagttggacttgtcactgcaaaaagcttcagcaagtttattgtccacctcggacacag 7478124  T

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Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 330
Target Start/End: Original strand, 10489304 - 10489383
Alignment:
Q  251 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 330  Q
    ||||||||||||||||||||||||||| |||||| |||     ||||| |||||||||||||| ||||| || |||||||    
T  10489304 acacacctgaagatcagctgctgatataggcttgtcaccattgaaagcttcagcaagtttatcgtccacctcggacacag 10489383  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 7478734 - 7478672
Alignment:
Q  20 tgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttggaaatgggg 84  Q
    |||||||||||  |||||||| ||||||||||||| || ||||||||||||||||| | ||||||    
T  7478734 tgcttcctaca--cacaataataacaaaaagaaaactagttacaaaataagatttgaagatgggg 7478672  T

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Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 10474236 - 10474347
Alignment:
Q  32 acacaataagaacaaaaagaaaattatttacaaaataagatttggaaatggg-------ggagaagtaacagctggttttcgtatatcatgctatatctg 124  Q
    ||||||||| ||||||||||||| | ||||||| ||||||| || | |||||       || ||||||||| |||||||||||||||||  ||||||||     
T  10474236 acacaataataacaaaaagaaaactgtttacaagataagatctgtagatgggaggtgggggcgaagtaacaactggttttcgtatatcacactatatcta 10474335  T
Q  125 aaaatgcatctg 136  Q
    ||||| ||||||    
T  10474336 aaaatacatctg 10474347  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 7476571 - 7476506
Alignment:
Q  18 attgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttggaaatggggg 85  Q
    |||||||||||||  |||||||| ||||||||||||| || | ||||||||||||||| | |||||||    
T  7476571 attgcttcctaca--cacaataataacaaaaagaaaactagtgacaaaataagatttgaagatggggg 7476506  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 330
Target Start/End: Original strand, 10475073 - 10475151
Alignment:
Q  252 cacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 330  Q
    ||||||| ||||||||||||||| ||||||||| |||  |  ||||| || ||||||||||| ||||| || |||||||    
T  10475073 cacacctcaagatcagctgctgagatgggcttgtcaccactgaaagcttctgcaagtttatcgtccacctcggacacag 10475151  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 10488760 - 10488815
Alignment:
Q  18 attgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttg 75  Q
    |||||||||||||  |||||||| |||| |||||||| || |||||||||||||||||    
T  10488760 attgcttcctaca--cacaataataacagaaagaaaactagttacaaaataagatttg 10488815  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 10507523 - 10507577
Alignment:
Q  20 tgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagattt 74  Q
    ||||||||||| | ||||||| ||||||||||||  ||| |||||||||||||||    
T  10507523 tgcttcctacacatacaataataacaaaaagaaacctatatacaaaataagattt 10507577  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 328
Target Start/End: Original strand, 10863406 - 10863496
Alignment:
Q  238 gacactgttacccacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacac 328  Q
    |||||| || ||| ||||||| ||| |||||| |||||||  |  || ||||| ||| ||| |||||||||||||||||||| ||||||||    
T  10863406 gacactattgccctcacacctcaagttcagctcctgatataagtctgtcactggaaagagcttcagcaagtttatcatccacctctgacac 10863496  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 9080036 - 9079984
Alignment:
Q  20 tgcttcctacaaacacaa--taagaacaaaaagaaaattatttacaaaataag 70  Q
    ||||||||||| ||||||  ||| ||||||||||||| |||||||||||||||    
T  9080036 tgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 9079984  T

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Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 10848851 - 10848897
Alignment:
Q  20 tgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaata 68  Q
    |||||||||||  |||||||| ||||||||||||||||||| |||||||    
T  10848851 tgcttcctaca--cacaataataacaaaaagaaaattattttcaaaata 10848897  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 33602615 - 33602724
Alignment:
Q  20 tgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttggaaa-------tgggggagaagtaacagctggttttcgtatatc 112  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| | |       |||||| ||||||||| ||||||||| ||||||    
T  33602615 tgcttcctacacacacaataataacaaaaagaaaactatttacaagataagatttgtagatggcgggtgggggcgaagtaacaactggttttcatatatc 33602714  T
Q  113 atgctatatc 122  Q
    || |||||||    
T  33602715 atactatatc 33602724  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 33575386 - 33575332
Alignment:
Q  20 tgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttg 75  Q
    ||||||||||| ||||||||| ||| ||||||||| ||||||||| ||||||||||    
T  33575386 tgcttcctacacacacaataataac-aaaagaaaactatttacaagataagatttg 33575332  T

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