View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8948_high_3 (Length: 242)
Name: NF8948_high_3
Description: NF8948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8948_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 2817348 - 2817493
Alignment:
| Q |
83 |
tgaataagatagttgatattagataaacatgtttaatgtgaatcatcatcatatctccacctcatgccatcattttcagtggctttgttttctaggattg |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
2817348 |
tgaataagatagttgatattagataaacatgtttaatgtgaatcatcatcatctctgcacctcatgccatcatcttcagtggcttagttttctaggattg |
2817447 |
T |
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| Q |
183 |
taagcttcgcgatttggacaatttagattgcgttggtacggtgttg |
228 |
Q |
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| T |
2817448 |
taagcttcgcgatttggacaatttagattgtgttggtatggtgttg |
2817493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 788128 - 788239
Alignment:
| Q |
113 |
gtttaatgtgaatcatcatcatatctccacctcatgccatcattttcagtggctttgttttctaggattgtaagcttcgcgatttggacaatttagattg |
212 |
Q |
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||||||||||||||||||| | ||| || | ||||||| ||| || ||||||||||||||||||||||||||||||| | |||||||| |||||||||| |
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| T |
788128 |
gtttaatgtgaatcatcattgtctctgcagcccatgccaccatctttagtggctttgttttctaggattgtaagcttcaccatttggacgatttagattg |
788227 |
T |
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| Q |
213 |
cgttggtacggt |
224 |
Q |
| |
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||||||| |||| |
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| T |
788228 |
cgttggtgcggt |
788239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2817294 - 2817346
Alignment:
| Q |
1 |
aatgatgaaggagtgcagttcgatttttggactagcggatgacataagttaat |
53 |
Q |
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| T |
2817294 |
aatgatgaaggagtgcagtccgatttttggactagcggatgacataagttaat |
2817346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 30314443 - 30314554
Alignment:
| Q |
113 |
gtttaatgtgaatcatcatcatatctccacctcatgccatcattttcagtggctttgttttctaggattgtaagcttcgcgatttggacaatttagattg |
212 |
Q |
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| T |
30314443 |
gtttaatgtgaatcatcattgtctctgcagcccatgccaccatctttagtggctttgttttctaggattgtaagcttcaccatttggacgatttagattg |
30314542 |
T |
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| Q |
213 |
cgttggtacggt |
224 |
Q |
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||||||| |||| |
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| T |
30314543 |
cgttggtgcggt |
30314554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 4052060 - 4052171
Alignment:
| Q |
113 |
gtttaatgtgaatcatcatcatatctccacctcatgccatcattttcagtggctttgttttctaggattgtaagcttcgcgatttggacaatttagattg |
212 |
Q |
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||||||||||||||||||| | ||| || | ||||||| ||| || | ||||||||||||||||||||||||||||| | |||||||| |||||||||| |
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| T |
4052060 |
gtttaatgtgaatcatcattgtctctgcagcccatgccaccatctttaatggctttgttttctaggattgtaagcttcaccatttggacgatttagattg |
4052159 |
T |
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| Q |
213 |
cgttggtacggt |
224 |
Q |
| |
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||||||| |||| |
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|
| T |
4052160 |
cgttggtgcggt |
4052171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 15032553 - 15032442
Alignment:
| Q |
113 |
gtttaatgtgaatcatcatcatatctccacctcatgccatcattttcagtggctttgttttctaggattgtaagcttcgcgatttggacaatttagattg |
212 |
Q |
| |
|
||||||||||||||||||| | ||| || | |||||| ||| || | ||||||||||||||||||||||||||||| | | |||||| |||||||||| |
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| T |
15032553 |
gtttaatgtgaatcatcattgtctctgcagcctatgccaccatctttactggctttgttttctaggattgtaagcttcaccacttggacgatttagattg |
15032454 |
T |
|
| Q |
213 |
cgttggtacggt |
224 |
Q |
| |
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||||||| |||| |
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| T |
15032453 |
cgttggtgcggt |
15032442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 25073817 - 25073711
Alignment:
| Q |
113 |
gtttaatgtgaatcatcatcatatctccacctcatgccatcattttcagtggctttgttttctaggattgtaagcttcgcgatttggacaatttagattg |
212 |
Q |
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|
||||||||||||||||||| | ||| || | ||||||| ||| || | ||||||||||||||||||||||||||||| | |||||||| |||||||||| |
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| T |
25073817 |
gtttaatgtgaatcatcattgtctctgcagcccatgccaccatctttaatggctttgttttctaggattgtaagcttcaccatttggacgatttagattg |
25073718 |
T |
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| Q |
213 |
cgttggt |
219 |
Q |
| |
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||||||| |
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| T |
25073717 |
cgttggt |
25073711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 12519855 - 12519966
Alignment:
| Q |
113 |
gtttaatgtgaatcatcatcatatctccacctcatgccatcattttcagtggctttgttttctaggattgtaagcttcgcgatttggacaatttagattg |
212 |
Q |
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||||||||||||||||||| | | | || | ||||||| ||| || ||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
12519855 |
gtttaatgtgaatcatcattgtctttgcagcccatgccaccatctttagtggctttgttttctaggattgtaagcttcagcatttggacgatttagattg |
12519954 |
T |
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| Q |
213 |
cgttggtacggt |
224 |
Q |
| |
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||||||| |||| |
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|
| T |
12519955 |
cgttggtgcggt |
12519966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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