View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8948_low_11 (Length: 232)
Name: NF8948_low_11
Description: NF8948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8948_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 19795105 - 19795305
Alignment:
| Q |
11 |
tggtggtggtgatgtgggaggagggtgagagacgggggtgattgccgtggaggggcagattgggtggtggtagtggtggaggaaagagatgaggtagaga |
110 |
Q |
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| T |
19795105 |
tggtggtggtgatgtgggaggagggtgaaagacgggg-tgattgtcgtggaggggcagattgggtggtggtagtggtggaggaaagagaggaggtagaga |
19795203 |
T |
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| Q |
111 |
gagttggtgaaat-tgatgctgagagaccatgataaaaaggtgttcttcatttaatctaatggtccaaaataacttgtatatagtgcacaaatttatcaa |
209 |
Q |
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| T |
19795204 |
gagttagtgaaatctgatgctgagagaccatgataaaaaggtgttcttcatttaatctaatggttcaaaagaacttatgtatggtgcacaaatttatcaa |
19795303 |
T |
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| Q |
210 |
tt |
211 |
Q |
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|| |
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| T |
19795304 |
tt |
19795305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 19794504 - 19794416
Alignment:
| Q |
124 |
tgatgctgagagaccatgataaaaaggtgttcttcatttaatctaatggtcc-aaaataacttgtatatagtgcacaaatttatcaatt |
211 |
Q |
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| T |
19794504 |
tgatgttgacagaccatgataaaaatgtgttcttcattcaatccaatggtccaaaaaaaacttgtgcatggtgcacaaatttatcaatt |
19794416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 38634298 - 38634102
Alignment:
| Q |
15 |
ggtggtgatgtgggaggagggtgagagacgggggtgattgccgtggaggggcagattgggtggtggtagtggtggaggaaagagatgaggtagagagagt |
114 |
Q |
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| T |
38634298 |
ggtggtgatgtgggaggagggtgaaagacgggg-tgattgtcgtggaggggcagattgggtggtggtagtggtggaggaaagagaggaggtagagagagt |
38634200 |
T |
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| Q |
115 |
tggtgaaat-tgatgctgagagaccatgataaaaaggtgttcttcatttaatctaatggtccaaaataacttgtatatagtgcacaaatttatcaatt |
211 |
Q |
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| T |
38634199 |
tagtgaaatctgatgctgagagaccatgataaaaaggtgttcttcatttaatctaatggtccaaaagaacttatgtatgatgcacaaatttatcaatt |
38634102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 37179221 - 37179142
Alignment:
| Q |
130 |
tgagagaccatgataaaaaggtgttcttcatttaatctaatggtcc-aaaataacttgtatatagtgcacaaatttatca |
208 |
Q |
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| T |
37179221 |
tgagagaccatgataaaaaggtgttcttcatttaatctaatggtccaaaaaaaacttgtgcatggtacacaaatttatca |
37179142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 38634903 - 38634991
Alignment:
| Q |
124 |
tgatgctgagagaccatgataaaaaggtgttcttcatttaatctaatggtcc-aaaataacttgtatatagtgcacaaatttatcaatt |
211 |
Q |
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| T |
38634903 |
tgatgttgacagaccatgataaaaatgtgttcttcattcaatccaatggtccaaaaaaaacttgtgcatgatgcacaaatttatcaatt |
38634991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 27969842 - 27969924
Alignment:
| Q |
124 |
tgatgctgagagaccatgataaaaaggtgttcttcatttaatctaatgg-tccaaaataacttgtatatagtgcacaaattta |
205 |
Q |
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|||| |||| |||||||||| || | ||||||||||| ||||||||||| | |||| ||||||| ||| ||||||||||||| |
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| T |
27969842 |
tgatactgacagaccatgatgaatatgtgttcttcatctaatctaatggttaaaaaaaaacttgtgtatggtgcacaaattta |
27969924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 22868193 - 22868112
Alignment:
| Q |
124 |
tgatgctgagagaccatgataaaaaggtgttcttcatttaatctaatggtccaaaataacttgtatatagtgcacaaattta |
205 |
Q |
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|||| |||| ||||||||||||||| ||||| |||||||||||| || | | || ||||||| ||| ||||||||||||| |
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| T |
22868193 |
tgatactgacagaccatgataaaaatgtgtttcacatttaatctaaaggccaagaaaaacttgtgtatggtgcacaaattta |
22868112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 31344323 - 31344395
Alignment:
| Q |
130 |
tgagagaccatgataaaaaggtgttcttcatttaatctaatggtccaaaataacttgtatatagtgcacaaat |
202 |
Q |
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| T |
31344323 |
tgagagaccatgataaaaatgtgttattcatttaatctaatggtcataaaaaacttgtgcatggtgcacaaat |
31344395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 42357879 - 42357807
Alignment:
| Q |
130 |
tgagagaccatgataaaaaggtgttcttcatttaatctaatggtccaaaataacttgtatatagtgcacaaat |
202 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| || |||||||||| |
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| T |
42357879 |
tgagagaccatgataaaaatgtgttattcatttaatctaatggtcataaaaaacttgtgcatggtgcacaaat |
42357807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 49085206 - 49085278
Alignment:
| Q |
130 |
tgagagaccatgataaaaaggtgttcttcatttaatctaatggtccaaaataacttgtatatagtgcacaaat |
202 |
Q |
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|||||||||| |||||||| ||||| ||||||||||||||||||| ||| ||||||| || |||||||||| |
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| T |
49085206 |
tgagagaccacgataaaaatgtgttattcatttaatctaatggtcataaaaaacttgtgcatggtgcacaaat |
49085278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 44308531 - 44308452
Alignment:
| Q |
124 |
tgatgctgagagaccatgataaaaaggtgttcttcatttaatctaatggtccaaa-ataacttgtatatagtgcacaaat |
202 |
Q |
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|||| ||||||||||| ||||||| |||||||||||||||||| |||||| ||| | ||||||| ||| |||||||||| |
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| T |
44308531 |
tgatactgagagaccagaataaaaatgtgttcttcatttaatctgatggtcaaaataaaacttgtgtatggtgcacaaat |
44308452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 41708515 - 41708440
Alignment:
| Q |
130 |
tgagagaccatgataaaaaggtgttcttcatttaatctaatggtccaaaataacttgtatatagtgcacaaattta |
205 |
Q |
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||||||||||||||||||| ||| || ||||||||||||||| |||| ||||||| || ||||||||||||| |
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| T |
41708515 |
tgagagaccatgataaaaatatgtgctacatttaatctaatggcaaaaaaaaacttgtgcatggtgcacaaattta |
41708440 |
T |
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