View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8948_low_2 (Length: 832)

Name: NF8948_low_2
Description: NF8948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8948_low_2
NF8948_low_2
[»] chr6 (15 HSPs)
chr6 (261-819)||(7564329-7564887)
chr6 (21-215)||(7564136-7564330)
chr6 (682-809)||(1470922-1471049)
chr6 (682-809)||(1459540-1459667)
chr6 (670-796)||(176272-176398)
chr6 (680-783)||(370782-370885)
chr6 (671-773)||(1442096-1442198)
chr6 (436-505)||(176599-176668)
chr6 (681-777)||(1453838-1453934)
chr6 (681-777)||(1465530-1465626)
chr6 (470-509)||(370569-370608)
chr6 (64-99)||(34625743-34625778)
chr6 (685-735)||(9819831-9819881)
chr6 (468-509)||(1459314-1459355)
chr6 (685-734)||(9703888-9703937)
[»] chr7 (3 HSPs)
chr7 (681-789)||(3927004-3927112)
chr7 (675-735)||(1078152-1078212)
chr7 (57-99)||(23948401-23948443)
[»] chr4 (6 HSPs)
chr4 (682-774)||(55419742-55419834)
chr4 (680-730)||(22672124-22672174)
chr4 (53-99)||(9906783-9906829)
chr4 (64-99)||(32369927-32369962)
chr4 (52-98)||(18783987-18784033)
chr4 (57-94)||(27857943-27857980)
[»] scaffold0044 (1 HSPs)
scaffold0044 (673-740)||(89137-89204)
[»] chr2 (10 HSPs)
chr2 (675-724)||(6538844-6538893)
chr2 (681-730)||(7160752-7160801)
chr2 (681-730)||(7168688-7168737)
chr2 (673-730)||(7156182-7156239)
chr2 (64-99)||(5461184-5461219)
chr2 (673-724)||(7174363-7174414)
chr2 (673-740)||(33026651-33026718)
chr2 (673-743)||(11237684-11237754)
chr2 (57-99)||(15098113-15098155)
chr2 (64-98)||(32102875-32102909)
[»] chr3 (18 HSPs)
chr3 (680-735)||(2442038-2442093)
chr3 (683-740)||(2456243-2456300)
chr3 (675-740)||(9608336-9608401)
chr3 (682-730)||(3754604-3754652)
chr3 (673-740)||(2631351-2631418)
chr3 (680-730)||(4142131-4142181)
chr3 (680-730)||(4157941-4157991)
chr3 (683-740)||(771499-771556)
chr3 (673-738)||(7324421-7324486)
chr3 (683-738)||(2644362-2644417)
chr3 (673-740)||(9561975-9562042)
chr3 (685-736)||(13498222-13498273)
chr3 (64-99)||(36302002-36302037)
chr3 (64-99)||(49636841-49636876)
chr3 (680-730)||(803215-803265)
chr3 (680-730)||(1007465-1007515)
chr3 (680-730)||(1022493-1022543)
chr3 (680-730)||(2696729-2696779)
[»] chr5 (7 HSPs)
chr5 (682-730)||(11081817-11081865)
chr5 (52-98)||(28322251-28322297)
chr5 (52-99)||(9895156-9895203)
chr5 (64-99)||(40878405-40878440)
chr5 (680-730)||(23766859-23766909)
chr5 (680-730)||(23816707-23816757)
chr5 (685-738)||(20292991-20293044)
[»] chr8 (5 HSPs)
chr8 (62-99)||(2506191-2506228)
chr8 (51-99)||(3508061-3508109)
chr8 (67-99)||(10170404-10170436)
chr8 (64-99)||(29096955-29096990)
chr8 (52-99)||(33697144-33697191)
[»] chr1 (2 HSPs)
chr1 (673-734)||(51381445-51381506)
chr1 (64-102)||(3148156-3148194)


Alignment Details
Target: chr6 (Bit Score: 487; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 261 - 819
Target Start/End: Original strand, 7564329 - 7564887
Alignment:
Q  261 atcaatggaatctgtgaatgcaacaattgggtgattgctaatgctcatagagaatgaaacaatataaattcatgacagtaaataaatattacagagaaca 360  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7564329 atcaatggaatctgtgaatggaacaattgggtgattgctaatgctcatagagaatgaaacaatataaattcatgacagtaaataaatattacagagaaca 7564428  T
Q  361 gtaccaatatgtagaaaaatagcaaaaaactcaaagcaacattaaataaataacacataagacgaaaacacatatggagaatctctgagacccaacatag 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7564429 gtaccaatatgtagaaaaatagcaaaaaactcaaagcaacattaaataaataacacataagacgaaaacacatatggagaatctctgagatccaacatag 7564528  T
Q  461 caaagcgtgtaggtcaaggtgatatgagactctcaacatagacattagacgagaaatcggtaaaagcgacattttgaatccccgaaatctttacggtacc 560  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7564529 caaagcgtgtaggtcaaggtgatacgagactctcaacatagacattagaggagaaatcggtaaaagcgagattttgaatccccgaaatctttacggtacc 7564628  T
Q  561 attcttataattgtaaacatataacttaccacaaaagtcaagcaacacttggtcatcctcctcataaataaaaagcagacgtgcatagaaataatcaatg 660  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| ||| |||| ||    
T  7564629 attcttataattgtaaacatataacttaccacaaaagtcaagcaacacttggtcatcctcctcatagataaaaagcacaggtgcatagcaattatcactg 7564728  T
Q  661 aattctgtgaatggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaagga 760  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  7564729 aattctttgaatggaacactgaacaatttagtccaagaatccttgtttccataatccttcataacccaaatattcaaaaaagttgtagtgtgagcaagga 7564828  T
Q  761 cgcataagcaatccctacaaacccctaagctaaagtaacgcagacgttcgtcaacacca 819  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  7564829 cccataagcaatccctacaaacccctaagctaaagtaacgcagacgttggtgaacacca 7564887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 7564136 - 7564330
Alignment:
Q  21 aggtaaccaagatagttctcaaattaggtagcaccaacacgtatgattacattcaattaatttattttctcaaattatttctcgaatggacaagtcggtg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  7564136 aggtaaccaagatagttctcaaattaggtagcaccaacacgtatgattacattcaattaatttattttctcaaattatttctcgaatggacaagttagtg 7564235  T
Q  121 tcgtgtttgtgcttcatagcaagaaaaagcaggagcataagcataagcataaccacctctcattaattagcaagataaaggttaatagtatcaat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7564236 tcgtgtttgtgcttcatagcaagaaaaagcaggagcataagcataagcataaccacctctcattaagtagcaagataaaggttaatagtatcaat 7564330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 682 - 809
Target Start/End: Original strand, 1470922 - 1471049
Alignment:
Q  682 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaa 781  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| | | || |||||||||| ||||||| |||||||| |||    
T  1470922 aacaatttagaccaagaatctttatttccataatctttcataacccaaatatccaaaaaagatttggtatgagcaaggatgcataagtaatccctagaaa 1471021  T
Q  782 cccctaagctaaagtaacgcagacgttc 809  Q
    |||| |||||||||| ||||||| ||||    
T  1471022 cccccaagctaaagttacgcagaggttc 1471049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 682 - 809
Target Start/End: Original strand, 1459540 - 1459667
Alignment:
Q  682 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaa 781  Q
    ||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||| | | || |||||||||||||||||| |||||||| |||    
T  1459540 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatccaaaaaagattttgtatgagcaaggacgcataagtaatccctataaa 1459639  T
Q  782 cccctaagctaaagtaacgcagacgttc 809  Q
    |||| |||||||||| | ||||| ||||    
T  1459640 cccccaagctaaagttatgcagaggttc 1459667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 670 - 796
Target Start/End: Complemental strand, 176398 - 176272
Alignment:
Q  670 aatggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagc 769  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||| ||||||  |||||||||||||||||||   || |||||||||||||||| ||    
T  176398 aatggaagagtgaacaatttagtccaagaatctttatttccataatcattcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggc 176299  T
Q  770 aatccctacaaacccctaagctaaagt 796  Q
    |||||||| ||||||| ||||| ||||    
T  176298 aatccctagaaacccccaagctgaagt 176272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 680 - 783
Target Start/End: Original strand, 370782 - 370885
Alignment:
Q  680 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctaca 779  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||   ||| ||||||| |||| |||||||||| |||||||||||||||| |    
T  370782 tgaacaatttagtccaagaatctttatttccataattcttcataacccaaacgcccataaaagttttagtctgagcaaggatgcataagcaatccctaga 370881  T
Q  780 aacc 783  Q
    ||||    
T  370882 aacc 370885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 671 - 773
Target Start/End: Original strand, 1442096 - 1442198
Alignment:
Q  671 atggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagca 770  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||||| ||||    |||||||||||| |||||||||    
T  1442096 atggaacagtgaacaatttagtccaagaatctttaattccataatccttcataacccatgtatccaaaatagttccgttttgagcaaggatgcataagca 1442195  T
Q  771 atc 773  Q
    |||    
T  1442196 atc 1442198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 436 - 505
Target Start/End: Complemental strand, 176668 - 176599
Alignment:
Q  436 ggagaatctctgagacccaacatagcaaagcgtgtaggtcaaggtgatatgagactctcaacatagacat 505  Q
    ||||||||| ||||| ||| || ||||||||  |||||||||||||||||||||||||||||||||||||    
T  176668 ggagaatctttgagagccagcagagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacat 176599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 681 - 777
Target Start/End: Original strand, 1453838 - 1453934
Alignment:
Q  681 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcccta 777  Q
    |||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||| |     |||  |||||||||| ||||||||||||||||    
T  1453838 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagcaatcccta 1453934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 681 - 777
Target Start/End: Original strand, 1465530 - 1465626
Alignment:
Q  681 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcccta 777  Q
    |||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||| |     |||  |||||||||| ||||||||||||||||    
T  1465530 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagcaatcccta 1465626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 470 - 509
Target Start/End: Original strand, 370569 - 370608
Alignment:
Q  470 taggtcaaggtgatatgagactctcaacatagacattaga 509  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  370569 taggtcaaggtgatatgagactctcaacgtagacattaga 370608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 34625778 - 34625743
Alignment:
Q  64 tgattacattcaattaatttattttctcaaattatt 99  Q
    ||||||||||||||||||| ||||||||||||||||    
T  34625778 tgattacattcaattaattcattttctcaaattatt 34625743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 685 - 735
Target Start/End: Original strand, 9819831 - 9819881
Alignment:
Q  685 aatttagtccaagaatccttatttccataatccttcataacccaaatatcc 735  Q
    |||||||||||||| ||  |||||||||| |||||||||| ||||||||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaatatcc 9819881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 509
Target Start/End: Original strand, 1459314 - 1459355
Alignment:
Q  468 tgtaggtcaaggtgatatgagactctcaacatagacattaga 509  Q
    |||||||||||||||||||||||||||  | |||||||||||    
T  1459314 tgtaggtcaaggtgatatgagactctctgcgtagacattaga 1459355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 734
Target Start/End: Original strand, 9703888 - 9703937
Alignment:
Q  685 aatttagtccaagaatccttatttccataatccttcataacccaaatatc 734  Q
    |||||||||||| ||||  |||||||||| |||||||||| |||||||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaatatc 9703937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 681 - 789
Target Start/End: Complemental strand, 3927112 - 3927004
Alignment:
Q  681 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaa 780  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||| ||||||  ||| | | ||||||| || ||||||||| || ||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaatacccaacaaagtttcagtgtaaacaaggacacacaagcaatccttagaa 3927013  T
Q  781 acccctaag 789  Q
    |||||||||    
T  3927012 acccctaag 3927004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 675 - 735
Target Start/End: Original strand, 1078152 - 1078212
Alignment:
Q  675 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 735  Q
    |||| |||||||||||||||| || ||  |||||||||| |||||||||||||||| ||||    
T  1078152 aacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatcc 1078212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 23948443 - 23948401
Alignment:
Q  57 acacgtatgattacattcaattaatttattttctcaaattatt 99  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||    
T  23948443 acacatatgattacattcaattaattgattttttcaaattatt 23948401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 682 - 774
Target Start/End: Complemental strand, 55419834 - 55419742
Alignment:
Q  682 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcc 774  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||   | || ||||||| ||||||||||||||||    
T  55419834 aacaatttagtccaagaatctttatttccataaaccttcataagccagatatccaaaaaagaattggtgtgagcaacgacgcataagcaatcc 55419742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 680 - 730
Target Start/End: Original strand, 22672124 - 22672174
Alignment:
Q  680 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 730  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  22672124 tgaacaatttagtccaagattccttatttccatattccttcattacccaaa 22672174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 9906829 - 9906783
Alignment:
Q  53 accaacacgtatgattacattcaattaatttattttctcaaattatt 99  Q
    |||||||  |||||||||||||||||||||||||||||| |||||||    
T  9906829 accaacatatatgattacattcaattaatttattttctctaattatt 9906783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 32369927 - 32369962
Alignment:
Q  64 tgattacattcaattaatttattttctcaaattatt 99  Q
    ||||||||||||||||||| ||||||||||||||||    
T  32369927 tgattacattcaattaattcattttctcaaattatt 32369962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 18784033 - 18783987
Alignment:
Q  52 caccaacacgtatgattacattcaattaatttattttctcaaattat 98  Q
    ||||||||||| | |||||||||||||| || |||||||||||||||    
T  18784033 caccaacacgtgtaattacattcaattacttcattttctcaaattat 18783987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 27857943 - 27857980
Alignment:
Q  57 acacgtatgattacattcaattaatttattttctcaaa 94  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  27857943 acacgtgtgattacattcaattaattaattttctcaaa 27857980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 673 - 740
Target Start/End: Complemental strand, 89204 - 89137
Alignment:
Q  673 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 740  Q
    |||||| || |||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||    
T  89204 ggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaa 89137  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 675 - 724
Target Start/End: Complemental strand, 6538893 - 6538844
Alignment:
Q  675 aacactgaacaatttagtccaagaatccttatttccataatccttcataa 724  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  6538893 aacactgaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 681 - 730
Target Start/End: Original strand, 7160752 - 7160801
Alignment:
Q  681 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 730  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaa 7160801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 681 - 730
Target Start/End: Original strand, 7168688 - 7168737
Alignment:
Q  681 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 730  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 7168737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 730
Target Start/End: Original strand, 7156182 - 7156239
Alignment:
Q  673 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 730  Q
    ||||||| ||||||||||| ||||||||| | ||||||||| |||||||||| |||||    
T  7156182 ggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaa 7156239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 5461184 - 5461219
Alignment:
Q  64 tgattacattcaattaatttattttctcaaattatt 99  Q
    ||||||||||||||||||||||| ||||||||||||    
T  5461184 tgattacattcaattaatttattatctcaaattatt 5461219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 673 - 724
Target Start/End: Original strand, 7174363 - 7174414
Alignment:
Q  673 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataa 724  Q
    ||||||| ||||||| ||||||||||||| | ||||||||| ||||||||||    
T  7174363 ggaacacggaacaatctagtccaagaatcttgatttccatattccttcataa 7174414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 673 - 740
Target Start/End: Complemental strand, 33026718 - 33026651
Alignment:
Q  673 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 740  Q
    ||||||| | ||||| |||||||||| |  ||||||||||| | |||||||||||||| |||||||||    
T  33026718 ggaacacggtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaa 33026651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 673 - 743
Target Start/End: Complemental strand, 11237754 - 11237684
Alignment:
Q  673 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagt 743  Q
    ||||||| |||||||||||||||||  ||  |||||||||| |||| ||||| ||||| ||| ||||||||    
T  11237754 ggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaaagt 11237684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 15098113 - 15098155
Alignment:
Q  57 acacgtatgattacattcaattaatttattttctcaaattatt 99  Q
    |||| ||| |||||||||||||||||| |||||||||||||||    
T  15098113 acacttataattacattcaattaattttttttctcaaattatt 15098155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 32102875 - 32102909
Alignment:
Q  64 tgattacattcaattaatttattttctcaaattat 98  Q
    |||||| ||||||||||||||||||||||||||||    
T  32102875 tgattatattcaattaatttattttctcaaattat 32102909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 680 - 735
Target Start/End: Complemental strand, 2442093 - 2442038
Alignment:
Q  680 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 735  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| ||||| ||||    
T  2442093 tgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 2442038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 683 - 740
Target Start/End: Complemental strand, 2456300 - 2456243
Alignment:
Q  683 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 740  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||| |||| ||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataacccaaacatcccaaaa 2456243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 675 - 740
Target Start/End: Original strand, 9608336 - 9608401
Alignment:
Q  675 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 740  Q
    ||||||| | |||||||||||||||||  |||||||||| |||||||||||||||| ||| |||||    
T  9608336 aacactgtataatttagtccaagaatctatatttccatattccttcataacccaaacatcaaaaaa 9608401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 682 - 730
Target Start/End: Complemental strand, 3754652 - 3754604
Alignment:
Q  682 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 730  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataacccaaa 3754604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 673 - 740
Target Start/End: Complemental strand, 2631418 - 2631351
Alignment:
Q  673 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 740  Q
    ||||||||| |||||||||||||||| || | ||||||||| |||||||||| ||||| || ||||||    
T  2631418 ggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaacattcaaaaa 2631351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 680 - 730
Target Start/End: Original strand, 4142131 - 4142181
Alignment:
Q  680 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 730  Q
    ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  4142131 tgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4142181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 680 - 730
Target Start/End: Original strand, 4157941 - 4157991
Alignment:
Q  680 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 730  Q
    ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  4157941 tgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4157991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 740
Target Start/End: Original strand, 771499 - 771556
Alignment:
Q  683 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 740  Q
    |||||||||||||||| ||  |||||||||| |||||||||||||||| |||| ||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaacatcccaaaa 771556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 738
Target Start/End: Original strand, 7324421 - 7324486
Alignment:
Q  673 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 738  Q
    ||||||||  |||||||||||||||| || |||||||| || |||||||||| ||||| |||||||    
T  7324421 ggaacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacatccaaa 7324486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 683 - 738
Target Start/End: Original strand, 2644362 - 2644417
Alignment:
Q  683 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 738  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||| |||||||    
T  2644362 acaatttagtccaagactcttgatttccatactccttcataatccaaacatccaaa 2644417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 673 - 740
Target Start/End: Original strand, 9561975 - 9562042
Alignment:
Q  673 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 740  Q
    ||||||||| | |||||||||||||| || | ||||||||| || ||||||| ||||| |||||||||    
T  9561975 ggaacactgtataatttagtccaagactcttgatttccatactcattcataatccaaacatccaaaaa 9562042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 736
Target Start/End: Complemental strand, 13498273 - 13498222
Alignment:
Q  685 aatttagtccaagaatccttatttccataatccttcataacccaaatatcca 736  Q
    |||||||||||||| || ||||||||||| |||||||||| ||||| |||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatcca 13498222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 36302037 - 36302002
Alignment:
Q  64 tgattacattcaattaatttattttctcaaattatt 99  Q
    ||||||||||||||||||||||||||||| ||||||    
T  36302037 tgattacattcaattaatttattttctcacattatt 36302002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 49636841 - 49636876
Alignment:
Q  64 tgattacattcaattaatttattttctcaaattatt 99  Q
    ||||||||||||||||||| ||||||||||||||||    
T  49636841 tgattacattcaattaattcattttctcaaattatt 49636876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 680 - 730
Target Start/End: Original strand, 803215 - 803265
Alignment:
Q  680 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 730  Q
    ||||||| ||||||||||| || ||||||||||| || |||||||||||||    
T  803215 tgaacaacttagtccaagactctttatttccatattctttcataacccaaa 803265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 680 - 730
Target Start/End: Complemental strand, 1007515 - 1007465
Alignment:
Q  680 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 730  Q
    |||||||||||||||| || || ||||||||||| |||||||| |||||||    
T  1007515 tgaacaatttagtccaggactcgttatttccatattccttcattacccaaa 1007465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 680 - 730
Target Start/End: Complemental strand, 1022543 - 1022493
Alignment:
Q  680 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 730  Q
    |||||||||||||||| || || ||||||||||| |||||||| |||||||    
T  1022543 tgaacaatttagtccatgactcgttatttccatattccttcattacccaaa 1022493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 680 - 730
Target Start/End: Original strand, 2696729 - 2696779
Alignment:
Q  680 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 730  Q
    ||||||||||| ||||||| || ||||||||||| |||||||||| |||||    
T  2696729 tgaacaatttaatccaagactctttatttccatattccttcataatccaaa 2696779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 682 - 730
Target Start/End: Complemental strand, 11081865 - 11081817
Alignment:
Q  682 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 730  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaa 11081817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 28322297 - 28322251
Alignment:
Q  52 caccaacacgtatgattacattcaattaatttattttctcaaattat 98  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||||    
T  28322297 caccaacacatgtgattacattcaattaattcattttctcaaattat 28322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 9895203 - 9895156
Alignment:
Q  52 caccaacacgtatgattacattcaattaatttattttctcaaattatt 99  Q
    ||||||||| | ||||||| ||||| ||||||||||||||||||||||    
T  9895203 caccaacacatgtgattacgttcaaataatttattttctcaaattatt 9895156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 40878405 - 40878440
Alignment:
Q  64 tgattacattcaattaatttattttctcaaattatt 99  Q
    ||||||||||||||||||||| ||||||||||||||    
T  40878405 tgattacattcaattaatttagtttctcaaattatt 40878440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 680 - 730
Target Start/End: Original strand, 23766859 - 23766909
Alignment:
Q  680 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 730  Q
    ||||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  23766859 tgaacaatttagtccaagactctttatttccatattctttcataatccaaa 23766909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 680 - 730
Target Start/End: Original strand, 23816707 - 23816757
Alignment:
Q  680 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 730  Q
    ||||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  23816707 tgaacaatttagtccaagactctttatttccatattctttcataatccaaa 23816757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 738
Target Start/End: Complemental strand, 20293044 - 20292991
Alignment:
Q  685 aatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 738  Q
    |||||||||||||| || ||| ||||||| |||||||||| ||||| |||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatccaaa 20292991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 2506228 - 2506191
Alignment:
Q  62 tatgattacattcaattaatttattttctcaaattatt 99  Q
    |||||||||||||||||||||||||||||| |||||||    
T  2506228 tatgattacattcaattaatttattttctctaattatt 2506191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 3508109 - 3508061
Alignment:
Q  51 gcaccaacacgtatgattacattcaattaatttattttctcaaattatt 99  Q
    |||||||||| |||||||||||| |||||  ||||||||||||||||||    
T  3508109 gcaccaacacatatgattacattgaattatgttattttctcaaattatt 3508061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 10170404 - 10170436
Alignment:
Q  67 ttacattcaattaatttattttctcaaattatt 99  Q
    |||||||||||||||||||||||||||||||||    
T  10170404 ttacattcaattaatttattttctcaaattatt 10170436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 29096990 - 29096955
Alignment:
Q  64 tgattacattcaattaatttattttctcaaattatt 99  Q
    ||||||||||||||||||||||||||| ||||||||    
T  29096990 tgattacattcaattaatttattttcttaaattatt 29096955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 33697144 - 33697191
Alignment:
Q  52 caccaacacgtatgattacattcaattaatttattttctcaaattatt 99  Q
    |||| ||||||||| ||| ||||||||| |||||||||||||||||||    
T  33697144 caccgacacgtatggttatattcaattattttattttctcaaattatt 33697191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 734
Target Start/End: Original strand, 51381445 - 51381506
Alignment:
Q  673 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatc 734  Q
    |||| ||||||||||||||||||||| || | ||||||||| || ||||||| |||||||||    
T  51381445 ggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatc 51381506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 3148194 - 3148156
Alignment:
Q  64 tgattacattcaattaatttattttctcaaattatttct 102  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  3148194 tgattatattaaattaatttattttctcaaattatttct 3148156  T

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